Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 2.4e-126 455.7 230 100.0
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 3.1e-121 438.7 230 94.8
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 8.4e-119 430.6 230 92.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 7.1e-118 427.6 230 93.5
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 6.1e-109 397.9 231 86.1
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 1.8e-108 396.4 229 84.3
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 8.7e-108 394.0 227 83.7
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 3.3e-107 392.1 229 84.7
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 9.7e-107 390.6 230 82.6
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 8.5e-103 377.5 228 82.0
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 4.2e-102 375.2 228 81.6
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 1.8e-100 369.8 229 79.0
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 4.4e-91 338.6 224 74.6
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 2.4e-89 332.8 224 71.4
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 8.5e-87 324.3 231 70.1
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.1e-86 323.9 229 69.0
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.5e-86 323.6 224 70.1
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.5e-86 323.6 228 70.6
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 3.2e-86 322.4 224 68.8
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 5.5e-86 321.6 225 70.2
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 7.2e-86 321.2 226 69.9
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 7.2e-86 321.2 229 69.4
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 7.2e-86 321.2 229 69.4
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 1.2e-85 320.5 224 71.0
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 1.2e-85 320.5 225 70.2
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 1.2e-85 320.5 225 70.2
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 1.6e-85 320.1 224 69.2
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 2.7e-85 319.3 224 68.8
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 2.7e-85 319.3 224 68.8
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 3.6e-85 318.9 226 69.5
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 4.7e-85 318.5 225 68.9
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 4.7e-85 318.5 224 69.2
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.8e-84 316.6 224 67.9
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 3.0e-84 315.8 227 66.5
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 3.0e-84 315.8 223 68.6
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 4.0e-84 315.5 221 70.6
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 5.2e-84 315.1 224 67.9
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 6.7e-84 314.7 225 67.1
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 8.8e-84 314.3 221 69.2
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 8.8e-84 314.3 225 67.1
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 1.2e-83 313.9 230 69.1
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 2.6e-83 312.8 228 67.1
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 2.6e-83 312.8 225 68.4
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 5.7e-83 311.6 225 66.2
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 7.5e-83 311.2 225 69.3
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 7.5e-83 311.2 222 68.9
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 1.3e-82 310.5 231 67.1
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.3e-82 310.5 231 67.1
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 1.7e-82 310.1 234 65.0
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 6.3e-82 308.1 225 68.4
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 8.2e-82 307.8 230 67.0
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 1.1e-81 307.4 228 67.5
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 1.4e-81 307.0 223 65.9
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.4e-81 307.0 224 66.1
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.4e-81 307.0 221 67.9
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 1.8e-81 306.6 225 67.1
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 2.4e-81 306.2 224 65.2
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 2.4e-81 306.2 223 68.2
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.1e-81 305.8 231 65.4
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 3.1e-81 305.8 227 68.7
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 4.1e-81 305.4 230 65.7
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 5.3e-81 305.1 224 67.4
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 9.1e-81 304.3 227 65.2
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 1.6e-80 303.5 223 66.8
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 3.5e-80 302.4 229 65.5
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 4.5e-80 302.0 230 66.5
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 4.5e-80 302.0 230 66.5
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.5e-80 302.0 230 64.8
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 5.9e-80 301.6 227 64.8
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 5.9e-80 301.6 223 65.5
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 7.7e-80 301.2 230 65.2
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 7.7e-80 301.2 225 66.7
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 1.0e-79 300.8 225 66.7
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 1.3e-79 300.4 224 67.0
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 2.2e-79 299.7 221 66.5
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 3.8e-79 298.9 235 65.5
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 6.5e-79 298.1 232 65.5
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.1e-78 297.4 223 65.9
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.1e-78 297.4 248 61.3
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 5.5e-78 295.0 221 66.5
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 8.0e-77 291.2 228 64.9
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 8.0e-77 291.2 228 64.9
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 8.0e-77 291.2 228 64.9
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.0e-76 290.8 227 63.9
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.0e-76 290.8 227 63.9
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.8e-76 290.0 223 65.0
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 8.8e-76 287.7 235 64.3
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 2.6e-75 286.2 225 62.7
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 1.7e-74 283.5 229 61.1
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 2.2e-74 283.1 218 65.6
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 2.2e-74 283.1 218 65.6
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 4.8e-74 282.0 218 65.1
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 1.4e-73 280.4 223 62.8
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.4e-73 279.6 218 64.2
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 7.0e-73 278.1 218 64.7
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 9.1e-73 277.7 224 61.2
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 1.9e-70 270.0 320 48.1
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 6.8e-68 261.5 229 59.0
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 1.2e-67 260.8 210 60.0
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 1.5e-67 260.4 217 59.0
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.7e-66 256.9 185 67.0
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 1.1e-65 254.2 208 58.2
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 4.1e-65 252.3 212 57.1
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 3.5e-64 249.2 183 67.2
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 7.5e-59 231.5 421 36.8
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 6.0e-56 221.9 215 52.6
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 4.9e-50 202.2 209 45.9
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 6.0e-48 195.3 162 61.7
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 5.0e-47 192.2 128 71.1
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 4.7e-45 185.7 117 73.5
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 2.3e-44 183.3 206 46.6
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 5.4e-41 172.2 109 75.2
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.6e-40 169.1 105 75.2
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 6.6e-39 165.2 122 68.0
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 8.6e-39 164.9 102 76.5
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.0e-31 139.8 99 65.7
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 4.3e-30 136.0 115 63.5
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 1.2e-29 134.4 130 54.6
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 3.6e-29 132.9 116 63.8
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.9e-22 110.5 228 30.7
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 1.6e-16 90.9 88 53.4
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 4.6e-16 89.4 83 53.0
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 1.3e-15 87.8 67 65.7
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 9.0e-12 75.1 77 51.9
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 7.1e-09 65.5 104 43.3


User provided reference genes

Program Settings