Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.2e-138 496.5 259 100.0
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 5.6e-99 364.8 358 60.9
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.9e-95 352.4 333 64.0
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 6.4e-79 298.1 361 53.2
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.7e-77 292.7 357 54.6
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 1.9e-75 286.6 319 54.9
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 9.6e-75 284.3 318 53.8
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.8e-74 282.7 318 54.7
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 6.2e-74 281.6 362 51.1
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 2.4e-73 279.6 355 52.1
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.1e-73 279.3 319 53.9
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 5.3e-73 278.5 318 52.2
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 6.9e-73 278.1 331 55.0
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.2e-72 277.3 321 52.6
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.5e-72 276.9 304 55.6
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.5e-72 276.9 304 55.6
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.6e-72 276.2 304 55.6
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 3.4e-72 275.8 363 50.7
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 7.6e-72 274.6 334 52.7
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.4e-70 270.4 356 49.7
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 3.2e-70 269.2 287 59.2
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 9.3e-70 267.7 312 52.2
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.2e-69 267.3 332 53.9
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.1e-69 266.5 330 52.1
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 3.5e-69 265.8 320 55.9
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.0e-68 264.2 336 51.2
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 3.0e-68 262.7 328 52.4
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 3.0e-68 262.7 331 51.7
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.1e-68 261.9 311 51.1
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 6.7e-68 261.5 340 50.0
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 8.7e-68 261.2 320 55.3
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.5e-67 260.4 324 50.0
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 2.5e-67 259.6 351 49.6
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.3e-67 259.2 310 51.6
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.6e-66 256.9 325 51.1
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 4.8e-66 255.4 318 51.9
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 1.1e-65 254.2 370 49.7
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 9.0e-65 251.1 332 49.7
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.2e-64 250.8 342 49.4
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 2.0e-64 250.0 320 51.2
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 4.5e-64 248.8 304 51.3
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.7e-63 246.9 345 49.0
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.7e-63 246.9 316 51.6
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.8e-63 245.7 342 48.2
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.8e-63 245.7 342 48.2
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.1e-62 244.2 328 50.6
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.4e-62 243.8 413 44.3
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 3.2e-62 242.7 329 48.6
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 4.2e-62 242.3 342 48.5
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 4.2e-62 242.3 341 48.4
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 3.5e-61 239.2 351 46.4
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.1e-59 234.2 391 43.0
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.5e-59 233.8 348 46.0
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.5e-59 233.8 335 49.0
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.5e-59 233.8 333 49.5
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 7.4e-59 231.5 342 46.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.4e-59 231.5 342 46.8
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 4.8e-58 228.8 386 43.8
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 8.2e-58 228.0 330 46.7
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.4e-57 226.5 366 44.0
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 6.9e-57 224.9 342 45.3
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 6.9e-57 224.9 374 43.6
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.0e-56 223.4 370 43.0
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 4.5e-56 222.2 387 42.6
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 6.5e-55 218.4 297 49.5
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 6.5e-55 218.4 314 45.9
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 5.5e-54 215.3 334 45.2
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 2.1e-53 213.4 332 46.7
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 3.6e-53 212.6 381 43.0
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.1e-53 211.8 257 50.6
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.4e-52 210.7 319 48.0
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.8e-52 210.3 424 38.4
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.8e-52 210.3 351 42.5
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.5e-51 207.2 333 44.7
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 3.3e-51 206.1 316 45.3
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 5.7e-51 205.3 331 45.0
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 9.7e-51 204.5 336 42.9
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.3e-50 204.1 331 45.0
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.7e-50 203.8 305 47.5
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.8e-50 203.0 332 44.3
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 3.7e-50 202.6 436 37.4
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.4e-49 200.7 414 39.1
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.4e-49 199.9 318 44.7
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 1.2e-48 197.6 419 37.0
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.5e-48 197.2 261 47.5
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.5e-48 197.2 261 47.5
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 7.7e-48 194.9 406 37.7
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.3e-47 194.1 341 43.4
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.7e-47 193.7 406 38.4
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 2.2e-47 193.4 318 42.5
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 2.9e-47 193.0 282 45.4
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 6.5e-47 191.8 324 41.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.1e-46 191.0 368 42.4
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.9e-46 190.3 291 46.0
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.5e-46 189.9 345 42.6
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 2.5e-46 189.9 331 40.8
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 3.2e-46 189.5 438 35.4
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 4.2e-46 189.1 408 37.5
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 4.2e-46 189.1 327 41.3
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.2e-45 187.6 400 38.0
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.2e-45 187.6 400 38.0
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.6e-45 187.2 295 45.8
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.6e-45 187.2 407 37.6
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.6e-45 187.2 405 37.0
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 5.1e-44 182.2 438 36.5
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 6.7e-44 181.8 410 36.6
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 6.7e-44 181.8 345 44.3
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.5e-43 180.6 437 35.7
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.5e-43 180.6 272 44.5
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 7.4e-43 178.3 347 39.8
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 2.8e-42 176.4 334 39.8
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 7.0e-41 171.8 441 34.2
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.0e-39 167.9 335 40.6
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.3e-39 167.5 430 34.9
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.3e-39 167.5 98 85.7
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.9e-39 166.4 147 63.3
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.0e-36 157.9 370 36.8
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.8e-36 157.1 309 41.4
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.8e-36 157.1 285 42.8
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.5e-35 154.1 296 39.2
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 2.8e-34 149.8 185 50.3
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.8e-34 149.8 368 36.4
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 2.0e-32 143.7 345 33.9
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.0e-31 141.4 250 41.6
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.3e-31 141.0 292 40.1
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.9e-31 139.8 328 36.3
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 2.3e-28 130.2 147 54.4
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 1.1e-25 121.3 310 36.8
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.1e-25 119.8 98 68.4
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.1e-22 111.3 319 32.6
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.0e-20 103.2 84 69.0
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 3.4e-19 99.8 249 35.7
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.4e-17 93.6 66 69.7
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.4e-17 93.6 61 77.0
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.6e-16 90.9 271 31.4
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.3e-15 87.0 58 70.7
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 6.6e-15 85.5 60 68.3
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.9e-14 84.0 58 69.0
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 2.5e-14 83.6 60 66.7
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 6.8e-12 75.5 130 41.5
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 9.8e-11 71.6 44 79.5
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 3.7e-10 69.7 183 32.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 4.1e-09 66.2 221 31.2
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 4.1e-09 66.2 67 59.7
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-07 60.1 80 43.8
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-07 60.1 80 43.8
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 6.6e-07 58.9 51 58.8
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 8.6e-07 58.5 201 32.3
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 1.1e-06 58.2 182 35.2
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.5e-06 57.8 51 56.9
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.9e-06 57.4 51 56.9
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.9e-06 57.4 78 42.3
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 2.5e-06 57.0 51 56.9


User provided reference genes

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