Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 0.0e+00 1770.4 900 100.0
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 0.0e+00 1345.9 905 79.0
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 0.0e+00 1301.6 881 79.3
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 0.0e+00 1290.4 998 70.7
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 0.0e+00 1087.0 914 66.3
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.1e-306 1056.6 916 64.5
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 7.7e-305 1050.4 916 64.3
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 2.0e-284 982.6 930 62.2
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 1.7e-275 953.0 921 60.4
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 6.2e-270 934.5 920 60.4
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 9.5e-263 910.6 909 59.3
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 3.5e-148 530.0 1105 36.4
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 2.2e-142 510.8 1107 36.0
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 1.1e-138 498.4 1096 35.3
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 1.1e-125 455.3 1102 34.6
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 3.8e-118 430.3 922 36.3
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 2.4e-117 427.6 984 34.7
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 5.4e-117 426.4 1002 34.0
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 4.3e-114 416.8 625 42.4
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.3e-113 415.2 1033 33.4
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 8.1e-113 412.5 1031 33.7
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.8e-112 411.4 1031 33.4
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 2.4e-112 411.0 1012 34.4
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 2.4e-112 411.0 1017 33.6
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 1.5e-111 408.3 1081 32.7
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 7.6e-111 406.0 1068 32.4
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.2e-110 404.4 1059 32.9
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 2.9e-110 404.1 1008 33.8
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 3.8e-110 403.7 628 41.7
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 4.9e-110 403.3 1016 34.3
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 6.4e-110 402.9 749 38.1
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 2.4e-109 401.0 1021 34.4
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.2e-109 400.2 956 33.7
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 9.3e-109 399.1 998 34.6
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.2e-108 398.7 1086 30.6
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 1.6e-108 398.3 1087 30.7
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.5e-106 391.0 1097 31.1
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 2.8e-105 387.5 1019 32.9
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.4e-104 384.4 1043 31.8
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 4.0e-104 383.6 873 35.3
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.5e-103 380.2 1007 33.0
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 2.9e-102 377.5 1055 31.8
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.9e-102 377.5 964 33.8
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 6.5e-102 376.3 982 33.5
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 3.2e-101 374.0 1030 32.6
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 5.5e-101 373.2 627 39.2
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 5.5e-101 373.2 1133 29.6
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 7.1e-101 372.9 1033 32.1
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 8.7e-99 365.9 830 34.3
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.5e-98 365.2 1068 30.5
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 1.8e-91 341.7 759 34.9
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 1.1e-90 339.0 979 31.3
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 1.5e-90 338.6 912 30.8
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 6.3e-89 333.2 991 30.1
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 5.3e-88 330.1 177 89.3
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 4.5e-87 327.0 985 31.8
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 3.8e-86 323.9 594 37.0
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 9.4e-85 319.3 955 30.6
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 1.2e-84 318.9 945 30.9
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 1.2e-84 318.9 1069 28.9
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 2.3e-83 314.7 745 34.1
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 2.3e-83 314.7 1109 28.8
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 3.7e-81 307.4 979 29.2
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 6.3e-81 306.6 788 31.2
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 1.8e-80 305.1 943 31.2
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 6.9e-80 303.1 607 35.1
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 6.9e-80 303.1 1012 29.8
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 9.1e-80 302.8 918 30.3
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 2.0e-79 301.6 915 30.3
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 2.6e-79 301.2 530 36.6
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 4.5e-79 300.4 1089 28.3
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.3e-78 298.9 693 32.9
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 1.7e-78 298.5 1152 27.1
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 2.9e-78 297.7 995 28.7
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 2.9e-78 297.7 939 30.0
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 6.5e-78 296.6 946 30.3
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 8.5e-78 296.2 998 28.5
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 8.5e-78 296.2 1007 29.3
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 4.2e-77 293.9 939 30.7
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 9.4e-77 292.7 595 34.3
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 2.1e-76 291.6 1148 27.0
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 2.7e-76 291.2 930 29.2
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 3.6e-76 290.8 953 28.5
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 3.0e-75 287.7 895 29.4
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 1.5e-74 285.4 963 30.2
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 2.0e-74 285.0 941 29.9
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 5.7e-74 283.5 910 29.1
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 4.8e-73 280.4 925 29.3
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 7.0e-72 276.6 613 33.0
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 9.1e-72 276.2 541 35.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.2e-71 275.8 938 28.3
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.6e-68 265.4 547 34.0
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.6e-68 265.4 463 37.1
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 1.6e-68 265.4 1057 27.3
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 8.8e-67 259.6 449 36.7
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 3.3e-66 257.7 638 31.8
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.4e-64 251.5 865 29.9
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.9e-61 241.9 982 26.7
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 1.3e-57 229.2 375 38.1
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 4.5e-55 220.7 174 56.3
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.6e-52 212.2 364 35.4
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 7.8e-47 193.4 558 29.6
Psat3g054600 Pisum sativum HOM05D006048 ORTHO05D007642 1.3e-41 176.0 142 69.7
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.3e-38 166.0 374 30.7
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.3e-38 165.2 379 30.3
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 1.1e-37 162.9 543 27.3
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 8.9e-35 153.3 728 27.9
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 4.4e-34 151.0 281 36.7
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.6e-31 142.5 237 38.4
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 2.6e-26 125.2 278 30.2
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 3.7e-25 121.3 243 29.2
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.9e-24 119.0 318 31.1
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 1.2e-20 106.3 355 31.5
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 2.8e-20 105.1 355 31.5
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 4.9e-17 94.4 85 51.8
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 3.2e-16 91.7 555 29.2
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 3.9e-14 84.7 272 26.5
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 9.0e-11 73.6 129 42.6
Psat4g159320 Pisum sativum HOM05D000515 ORTHO05D001911 9.0e-11 73.6 63 68.3
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.4e-08 65.5 108 40.7
Psat5g154640 Pisum sativum HOM05D000515 ORTHO05D020117 2.4e-08 65.5 42 76.2
FvH4_3g29010 Fragaria vesca HOM05D006048 ORTHO05D035641 2.1e-07 62.4 131 41.2


User provided reference genes

Program Settings