Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g081570 Medicago truncatula HOM05D000538 ORTHO05D000614 1.2e-49 199.5 100 100.0
TPR.G11149 Trifolium pratense HOM05D000538 ORTHO05D000614 3.1e-21 105.1 134 49.3
Psat6g147320 Pisum sativum HOM05D000538 ORTHO05D000614 2.6e-20 102.1 140 47.1
Medtr1g081580 Medicago truncatula HOM05D000538 ORTHO05D000614 7.6e-20 100.5 86 61.6
Lalb_Chr15g0076911 Lupinus albus HOM05D000538 ORTHO05D000614 1.0e-16 90.1 87 56.3
Psat3g008360 Pisum sativum HOM05D000538 ORTHO05D000614 3.9e-16 88.2 87 54.0
TPR.G6965 Trifolium pratense HOM05D000538 ORTHO05D000614 3.9e-16 88.2 87 54.0
Ca_09404_v3 Cicer arietinum L. HOM05D000538 ORTHO05D000614 5.1e-16 87.8 87 54.0
Ca_30163_v3 Cicer arietinum L. HOM05D000538 ORTHO05D000614 5.1e-16 87.8 87 54.0
Glyma.19G242600 Glycine max HOM05D000538 ORTHO05D000614 5.1e-16 87.8 87 55.2
VMungo0540G2102 Vigna mungo HOM05D000538 ORTHO05D000614 5.1e-16 87.8 87 55.2
Glyma.03G245200 Glycine max HOM05D000538 ORTHO05D000614 8.7e-16 87.0 87 55.2
Lalb_Chr18g0045111 Lupinus albus HOM05D000538 ORTHO05D000614 8.7e-16 87.0 87 54.0
Phvul.006G099400 Phaseolus vulgaris HOM05D000538 ORTHO05D000614 1.1e-15 86.7 87 54.0
Lalb_Chr04g0261071 Lupinus albus HOM05D000538 ORTHO05D000614 1.5e-15 86.3 87 55.2
Medtr7g114600 Medicago truncatula HOM05D000538 ORTHO05D000614 1.5e-15 86.3 87 52.9
QL03p023291 Quercus lobata HOM05D000538 ORTHO05D000614 2.5e-15 85.5 87 52.9
QL03p023999 Quercus lobata HOM05D000538 ORTHO05D000614 2.5e-15 85.5 87 52.9
arahy.Tifrunner.gnm1.ann1.CHJC5X Arachis hypogaea HOM05D000538 ORTHO05D000614 3.3e-15 85.1 87 54.0
Cfa006471 Carpinus fangiana HOM05D000538 ORTHO05D000614 3.3e-15 85.1 87 52.9
Ciclev10001378m.g Citrus clementina HOM05D000538 ORTHO05D000614 3.3e-15 85.1 87 51.7
Haze_04320 Corylus avellana HOM05D000538 ORTHO05D000614 3.3e-15 85.1 87 52.9
Atru.chr2.717 Acer truncatum HOM05D000538 ORTHO05D000614 7.4e-15 84.0 87 52.9
CiPaw.07G007200 Carya illinoinensis HOM05D000538 ORTHO05D000614 7.4e-15 84.0 87 51.7
Ca_10061_v3 Cicer arietinum L. HOM05D000538 ORTHO05D000614 7.4e-15 84.0 87 52.9
Lj5g0020032 Lotus japonicus HOM05D000538 ORTHO05D000614 7.4e-15 84.0 87 52.9
CiPaw.08G178800 Carya illinoinensis HOM05D000538 ORTHO05D000614 1.3e-14 83.2 87 52.9
VMungo0720G1181 Vigna mungo HOM05D000538 ORTHO05D000614 1.6e-14 82.8 87 51.7
Lj7P475T49 Lonicera japonica HOM05D000538 ORTHO05D000614 4.8e-14 81.3 90 52.2
MSTRG.20435 Avicennia marina HOM05D000538 ORTHO05D000614 8.1e-14 80.5 91 50.5
Potri.001G261700 Populus trichocarpa HOM05D000538 ORTHO05D000614 1.1e-13 80.1 89 50.6
Sabra16G0160500 Salix brachista HOM05D000538 ORTHO05D000614 1.1e-13 80.1 89 50.6
Glyma.20G228500 Glycine max HOM05D000538 ORTHO05D000614 1.4e-13 79.7 87 49.4
Hma1.2p1_0332F.1_g127730 Hydrangea macrophylla HOM05D000538 ORTHO05D000614 1.4e-13 79.7 92 51.1
Lj1g0015191 Lotus japonicus HOM05D000538 ORTHO05D000614 1.4e-13 79.7 87 49.4
ClCG03G016240 Citrullus lanatus HOM05D000538 ORTHO05D000614 3.1e-13 78.6 89 50.6
MELO3C015400.2 Cucumis melo HOM05D000538 ORTHO05D000614 3.1e-13 78.6 89 50.6
CsaV3_1G039710 Cucumis sativus L. HOM05D000538 ORTHO05D000614 3.1e-13 78.6 89 50.6
Glyma.10G160000 Glycine max HOM05D000538 ORTHO05D000614 3.1e-13 78.6 87 49.4
Phvul.007G185400 Phaseolus vulgaris HOM05D000538 ORTHO05D000614 3.1e-13 78.6 87 49.4
Dinv17755 Davidia involucrata HOM05D000538 ORTHO05D000614 4.0e-13 78.2 90 50.0
EL10Ac4g09191 Beta vulgaris HOM05D000538 ORTHO05D000614 5.3e-13 77.8 90 50.0
Dinv11569 Davidia involucrata HOM05D000538 ORTHO05D000614 5.3e-13 77.8 90 50.0
Nn4g25336 Nelumbo nucifera HOM05D000538 ORTHO05D000614 5.3e-13 77.8 90 48.9
Nitab4.5_0001519g0200 Nicotiana tabacum HOM05D000538 ORTHO05D000614 5.3e-13 77.8 91 49.5
Nitab4.5_0002079g0040 Nicotiana tabacum HOM05D000538 ORTHO05D000614 5.3e-13 77.8 91 49.5
Sed0010642 Sechium edule HOM05D000538 ORTHO05D000614 5.3e-13 77.8 89 49.4
Sed0024518 Sechium edule HOM05D000538 ORTHO05D000614 5.3e-13 77.8 89 49.4
TAR365G0257 Trochodendron aralioides HOM05D000538 ORTHO05D000614 6.9e-13 77.4 90 48.9
Cc02_g31480 Coffea canephora HOM05D000538 ORTHO05D000614 1.2e-12 76.6 90 47.8
PSO170G0914 Papaver somniferum HOM05D000538 ORTHO05D000614 1.2e-12 76.6 90 48.9
TAR636G2519 Trochodendron aralioides HOM05D000538 ORTHO05D000614 1.2e-12 76.6 90 47.8
AUR62004996 Chenopodium quinoa HOM05D000538 ORTHO05D000614 1.5e-12 76.3 90 47.8
unitig_578.g16302 Utricularia gibba HOM05D000538 ORTHO05D000614 1.5e-12 76.3 88 50.0
AUR62000969 Chenopodium quinoa HOM05D000538 ORTHO05D000614 2.0e-12 75.9 90 47.8
Migut.N01942 Erythranthe guttata HOM05D000538 ORTHO05D000614 2.0e-12 75.9 93 47.3
Sc20g0000210 Simmondsia chinensis HOM05D000538 ORTHO05D000614 2.0e-12 75.9 89 50.6
Oeu027049.1 Olea europaea HOM05D000538 ORTHO05D000614 2.6e-12 75.5 90 50.0
PSO357G0178 Papaver somniferum HOM05D000538 ORTHO05D000614 3.4e-12 75.1 90 47.8
Aqoxy2G02479 Aquilegia oxysepala HOM05D000538 ORTHO05D000614 4.5e-12 74.7 91 48.4
Aqoxy3G02153 Aquilegia oxysepala HOM05D000538 ORTHO05D000614 4.5e-12 74.7 91 48.4
Aqoxy5G01294 Aquilegia oxysepala HOM05D000538 ORTHO05D000614 4.5e-12 74.7 91 48.4
Cfa006470 Carpinus fangiana HOM05D000538 ORTHO05D000614 4.5e-12 74.7 86 47.7
Migut.N01941 Erythranthe guttata HOM05D000538 ORTHO05D000614 4.5e-12 74.7 93 46.2
Manes.09G156900 Manihot esculenta HOM05D000538 ORTHO05D000614 4.5e-12 74.7 87 49.4
Potri.009G056400 Populus trichocarpa HOM05D000538 ORTHO05D000614 4.5e-12 74.7 88 48.9
RcHm_v2.0_Chr3g0452191 Rosa chinensis HOM05D000538 ORTHO05D000614 4.5e-12 74.7 90 48.9
Sabra09G0041300 Salix brachista HOM05D000538 ORTHO05D000614 4.5e-12 74.7 88 48.9
SHI18329 Sapria himalayana HOM05D000538 ORTHO05D000614 4.5e-12 74.7 87 49.4
CAN.G95.9 Capsicum annuum HOM05D000538 ORTHO05D000614 5.8e-12 74.3 91 47.3
CDE09G0318 Ceratophyllum demersum HOM05D000538 ORTHO05D000614 5.8e-12 74.3 93 45.2
Oeu012477.1 Olea europaea HOM05D000538 ORTHO05D000614 5.8e-12 74.3 90 48.9
SalBow3G2906 Salvia bowleyana HOM05D000538 ORTHO05D000614 5.8e-12 74.3 92 46.7
Sc06g0003630 Simmondsia chinensis HOM05D000538 ORTHO05D000614 5.8e-12 74.3 89 49.4
TWI56G0981 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 5.8e-12 74.3 88 47.7
Cpa.g.sc264.16 Carica papaya HOM05D000538 ORTHO05D000614 7.6e-12 73.9 90 47.8
SGA_v2.0_scaffold90G27740 Striga asiatica HOM05D000538 ORTHO05D000614 7.6e-12 73.9 92 47.8
Nitab4.5_0002840g0090 Nicotiana tabacum HOM05D000538 ORTHO05D000614 1.0e-11 73.6 93 46.2
TWI12G1301 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 1.0e-11 73.6 88 48.9
CDE02G3105 Ceratophyllum demersum HOM05D000538 ORTHO05D000614 1.3e-11 73.2 93 45.2
Haze_04321 Corylus avellana HOM05D000538 ORTHO05D000614 1.3e-11 73.2 86 47.7
TWI36G0743 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 1.3e-11 73.2 88 47.7
Ah.04g162420 Amaranthus hybridus HOM05D000538 ORTHO05D000614 1.7e-11 72.8 90 46.7
FAN02G2884 Fragaria x ananassa HOM05D000538 ORTHO05D000614 1.7e-11 72.8 94 46.8
FAN05G5399 Fragaria x ananassa HOM05D000538 ORTHO05D000614 1.7e-11 72.8 92 47.8
MD12G1236500 Malus domestica HOM05D000538 ORTHO05D000614 1.7e-11 72.8 90 50.0
SGA_v2.0_scaffold25G10730 Striga asiatica HOM05D000538 ORTHO05D000614 1.7e-11 72.8 92 46.7
FAN09G3475 Fragaria x ananassa HOM05D000538 ORTHO05D000614 2.2e-11 72.4 93 47.3
FAN14G2629 Fragaria x ananassa HOM05D000538 ORTHO05D000614 2.2e-11 72.4 94 46.8
MBI19_g37074_MAGBIO Magnolia biondii HOM05D000538 ORTHO05D000614 2.2e-11 72.4 90 47.8
Ah.06g192650 Amaranthus hybridus HOM05D000538 ORTHO05D000614 2.9e-11 72.0 90 46.7
FAN05G5032 Fragaria x ananassa HOM05D000538 ORTHO05D000614 3.8e-11 71.6 95 46.3
Prupe.6G338800 Prunus persica HOM05D000538 ORTHO05D000614 3.8e-11 71.6 91 49.5
FvH4_6g03660 Fragaria vesca HOM05D000538 ORTHO05D000614 6.5e-11 70.9 95 45.3
PSO761G0254 Papaver somniferum HOM05D000538 ORTHO05D000614 6.5e-11 70.9 94 44.7
unitig_61.g26146 Utricularia gibba HOM05D000538 ORTHO05D000614 6.5e-11 70.9 92 44.6
DCAR_029727 Daucus carota HOM05D000538 ORTHO05D000614 8.4e-11 70.5 90 45.6
Solyc02g083750.1 Solanum lycopersicum HOM05D000538 ORTHO05D000614 8.4e-11 70.5 93 45.2
Sopen02g028530 Solanum pennellii HOM05D000538 ORTHO05D000614 8.4e-11 70.5 93 45.2
PGSC0003DMG400003572 Solanum tuberosum HOM05D000538 ORTHO05D000614 8.4e-11 70.5 93 45.2
PGSC0003DMG400022471 Solanum tuberosum HOM05D000538 ORTHO05D000614 8.4e-11 70.5 92 43.5
unitig_0.g1004 Utricularia gibba HOM05D001495 ORTHO05D004314 8.4e-11 70.5 92 43.5
HanXRQChr01g0014741 Helianthus annuus HOM05D000538 ORTHO05D000614 1.1e-10 70.1 89 46.1
PSO210G0344 Papaver somniferum HOM05D000538 ORTHO05D000614 1.4e-10 69.7 94 43.6
Solyc01g097890.2 Solanum lycopersicum HOM05D000538 ORTHO05D000614 1.9e-10 69.3 92 43.5
Sopen01g041490 Solanum pennellii HOM05D000538 ORTHO05D000614 1.9e-10 69.3 92 43.5
Duzib177G0549 Durio zibethinus HOM05D000538 ORTHO05D000614 3.2e-10 68.6 94 44.7
ECA248G1478 Erigeron canadensis HOM05D000538 ORTHO05D000614 3.2e-10 68.6 90 44.4
SalBow7G2435 Salvia bowleyana HOM05D000538 ORTHO05D000614 3.2e-10 68.6 92 44.6
Actinidia33844 Actinidia chinensis HOM05D000538 ORTHO05D000614 4.2e-10 68.2 91 45.1
COL.COLO4_15268 Corchorus olitorius HOM05D000538 ORTHO05D000614 4.2e-10 68.2 94 44.7
Lsat_1_v5_gn_5_179580 Lactuca sativa HOM05D000538 ORTHO05D000614 5.5e-10 67.8 91 44.0
QL03p024011 Quercus lobata HOM05D000538 ORTHO05D000614 5.5e-10 67.8 87 42.5
Actinidia30920 Actinidia chinensis HOM05D000538 ORTHO05D000614 7.1e-10 67.4 95 45.3
Rhsim05G0159700 Rhododendron simsii HOM05D000538 ORTHO05D000614 7.1e-10 67.4 93 44.1
Peaxi162Scf00404g00019 Petunia axillaris HOM05D000538 ORTHO05D000614 9.3e-10 67.0 91 44.0
THA.LOC104823638 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 9.3e-10 67.0 91 41.8
CSS0010019 Camellia sinensis var. sinensis HOM05D000538 ORTHO05D000614 1.2e-09 66.6 90 46.7
CSS0012610 Camellia sinensis var. sinensis HOM05D000538 ORTHO05D000614 1.2e-09 66.6 90 46.7
AT5G28040 Arabidopsis thaliana HOM05D000538 ORTHO05D000614 1.6e-09 66.2 89 47.2
A06p37810 Brassica napus HOM05D000538 ORTHO05D003297 1.6e-09 66.2 89 46.1
C07p40420 Brassica napus HOM05D000538 ORTHO05D003297 1.6e-09 66.2 89 46.1
BolC7t44577H Brassica oleracea HOM05D000538 ORTHO05D003297 1.6e-09 66.2 89 46.1
BraA06t26700Z Brassica rapa HOM05D000538 ORTHO05D003297 1.6e-09 66.2 89 46.1
ATR0796G211 Amborella trichopoda HOM05D000538 ORTHO05D000614 2.7e-09 65.5 87 44.8
CARHR079210 Cardamine hirsuta HOM05D000538 ORTHO05D000614 2.7e-09 65.5 89 47.2
CiPaw.08G178900 Carya illinoinensis HOM05D000538 ORTHO05D000614 2.7e-09 65.5 88 44.3
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.7e-09 65.5 93 40.9
Thecc.05G289600 Theobroma cacao HOM05D000538 ORTHO05D000614 2.7e-09 65.5 94 43.6
BcaNung04253 Brassica carinata HOM05D000538 ORTHO05D000614 3.5e-09 65.1 92 44.6
Duzib128G1082 Durio zibethinus HOM05D000538 ORTHO05D000614 3.5e-09 65.1 94 43.6
Gohir.D11G265700 Gossypium hirsutum HOM05D000538 ORTHO05D000614 3.5e-09 65.1 95 43.2
Gorai.007G285700 Gossypium raimondii HOM05D000538 ORTHO05D000614 3.5e-09 65.1 95 43.2
AL6G40350 Arabidopsis lyrata HOM05D000538 ORTHO05D000614 4.6e-09 64.7 89 46.1
AT3G04930 Arabidopsis thaliana HOM05D000538 ORTHO05D000614 4.6e-09 64.7 89 46.1
AL3G15240 Arabidopsis lyrata HOM05D000538 ORTHO05D000614 6.0e-09 64.3 89 46.1
Carub.0003s0414 Capsella rubella HOM05D000538 ORTHO05D000614 6.0e-09 64.3 89 46.1
Thhalv10020724m.g Eutrema salsugineum HOM05D000538 ORTHO05D000614 6.0e-09 64.3 89 46.1
BNapus_Darmor_BZH_scaffold_78p01050 Brassica napus HOM05D000538 ORTHO05D000614 7.9e-09 63.9 88 44.3
BraA01t04500Z Brassica rapa HOM05D000538 ORTHO05D000614 7.9e-09 63.9 88 44.3
Carub.0006s2556 Capsella rubella HOM05D000538 ORTHO05D000614 7.9e-09 63.9 89 46.1
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 7.9e-09 63.9 94 39.4
Gohir.A13G105400 Gossypium hirsutum HOM05D000538 ORTHO05D000614 7.9e-09 63.9 92 42.4
Gohir.D13G108400 Gossypium hirsutum HOM05D000538 ORTHO05D000614 7.9e-09 63.9 92 42.4
Gorai.013G121800 Gossypium raimondii HOM05D000538 ORTHO05D000614 7.9e-09 63.9 92 42.4
Lsat_1_v5_gn_2_66580 Lactuca sativa HOM05D000538 ORTHO05D000614 7.9e-09 63.9 92 44.6
THA.LOC104820088 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 7.9e-09 63.9 89 46.1
Aa31LG11G8790 Aethionema arabicum HOM05D000538 ORTHO05D000614 1.0e-08 63.5 89 46.1
Thhalv10005455m.g Eutrema salsugineum HOM05D000538 ORTHO05D000614 1.0e-08 63.5 89 46.1
Gohir.A11G256000 Gossypium hirsutum HOM05D000538 ORTHO05D000614 1.0e-08 63.5 95 43.2
Sp2g20280 Schrenkiella parvula HOM05D000538 ORTHO05D000614 1.0e-08 63.5 89 46.1
Aa31LG5G15310 Aethionema arabicum HOM05D000538 ORTHO05D000614 1.3e-08 63.2 89 44.9
Sp3g03750 Schrenkiella parvula HOM05D000538 ORTHO05D000614 1.3e-08 63.2 89 44.9
ECA238G2023 Erigeron canadensis HOM05D000538 ORTHO05D000614 1.8e-08 62.8 93 44.1
BcaB04g19646 Brassica carinata HOM05D000538 ORTHO05D000614 2.3e-08 62.4 89 44.9
CARHR184980 Cardamine hirsuta HOM05D000538 ORTHO05D000614 2.3e-08 62.4 89 44.9
CAN.G134.173 Capsicum annuum HOM05D000538 ORTHO05D000614 3.0e-08 62.0 93 39.8
THA.LOC104802821 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 6.7e-08 60.8 89 46.1
Hma1.2p1_0083F.1_g042780 Hydrangea macrophylla HOM05D000538 ORTHO05D000614 8.7e-08 60.5 87 43.7
HanXRQChr14g0445951 Helianthus annuus HOM05D000538 ORTHO05D000614 1.9e-07 59.3 93 41.9
A05p42680 Brassica napus HOM05D000538 ORTHO05D000614 2.5e-07 58.9 90 43.3
C05p62400 Brassica napus HOM05D000538 ORTHO05D000614 2.5e-07 58.9 90 43.3
BolC5t34893H Brassica oleracea HOM05D000384 ORTHO05D000614 2.5e-07 58.9 90 43.3
BraA05t22985Z Brassica rapa HOM05D000538 ORTHO05D000614 2.5e-07 58.9 90 43.3
BcaC04g23709 Brassica carinata HOM05D000538 ORTHO05D000614 3.3e-07 58.5 93 43.0
C09p05510 Brassica napus HOM05D000538 ORTHO05D000614 3.3e-07 58.5 93 43.0
BolC9t53480H Brassica oleracea HOM05D000538 ORTHO05D000614 3.3e-07 58.5 93 43.0
HanXRQChr12g0379931 Helianthus annuus HOM05D000538 ORTHO05D000614 3.3e-07 58.5 90 43.3
A09p05100 Brassica napus HOM05D000538 ORTHO05D000614 4.3e-07 58.2 91 42.9
BraA09t36149Z Brassica rapa HOM05D000538 ORTHO05D000614 4.3e-07 58.2 91 42.9
ECA248G3523 Erigeron canadensis HOM05D000538 ORTHO05D000614 1.6e-06 56.2 86 39.5
Lj8P55T60 Lonicera japonica HOM05D000538 ORTHO05D000614 2.8e-06 55.5 88 34.1
Gohir.D10G203100 Gossypium hirsutum HOM05D000538 ORTHO05D000614 3.7e-06 55.1 86 37.2
Gorai.011G228000 Gossypium raimondii HOM05D000538 ORTHO05D000614 3.7e-06 55.1 86 37.2
Actinidia24277 Actinidia chinensis HOM05D000538 ORTHO05D000614 6.2e-06 54.3 86 36.0
Gohir.A10G196200 Gossypium hirsutum HOM05D000538 ORTHO05D000614 6.2e-06 54.3 86 37.2


User provided reference genes

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