Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.0e-50 202.6 140 100.0
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 6.6e-38 161.0 140 70.0
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 9.6e-37 157.1 137 70.1
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 4.0e-35 151.8 137 69.3
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 2.1e-28 129.4 96 76.0
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 1.1e-27 127.1 91 75.8
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 1.4e-27 126.7 91 78.0
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 3.1e-27 125.6 96 74.0
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 4.0e-27 125.2 93 77.4
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 4.0e-27 125.2 96 74.0
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 6.9e-27 124.4 94 74.5
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 6.9e-27 124.4 94 71.3
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.2e-26 123.6 92 76.1
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 1.2e-26 123.6 94 72.3
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 2.0e-26 122.9 97 70.1
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 5.8e-26 121.3 93 75.3
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 5.8e-26 121.3 89 76.4
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 5.8e-26 121.3 138 57.2
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 7.6e-26 120.9 95 70.5
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 9.9e-26 120.6 91 73.6
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 1.3e-25 120.2 96 70.8
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 1.3e-25 120.2 91 73.6
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 1.7e-25 119.8 97 69.1
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 1.7e-25 119.8 93 73.1
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 1.7e-25 119.8 96 71.9
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 2.2e-25 119.4 147 54.4
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 2.2e-25 119.4 96 68.8
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 2.2e-25 119.4 96 70.8
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 2.9e-25 119.0 97 67.0
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 2.9e-25 119.0 93 71.0
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 4.9e-25 118.2 93 72.0
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 6.4e-25 117.9 92 70.7
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 8.4e-25 117.5 93 72.0
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 1.1e-24 117.1 91 72.5
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.1e-24 117.1 97 72.2
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 1.4e-24 116.7 96 67.7
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 1.9e-24 116.3 96 67.7
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 2.4e-24 115.9 100 69.0
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 3.2e-24 115.5 88 72.7
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 3.2e-24 115.5 96 69.8
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 5.5e-24 114.8 91 71.4
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 5.5e-24 114.8 91 70.3
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 7.1e-24 114.4 99 68.7
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 9.3e-24 114.0 85 76.5
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 9.3e-24 114.0 94 69.1
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 1.6e-23 113.2 87 78.2
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 1.6e-23 113.2 91 70.3
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 1.6e-23 113.2 96 64.6
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 2.1e-23 112.8 146 52.1
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.1e-23 112.8 88 71.6
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 2.1e-23 112.8 96 64.6
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-23 112.8 96 64.6
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-23 112.8 96 64.6
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-23 112.8 96 64.6
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-23 112.8 96 64.6
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 2.1e-23 112.8 91 71.4
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 2.1e-23 112.8 89 70.8
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 3.5e-23 112.1 88 71.6
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 4.6e-23 111.7 93 65.6
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 4.6e-23 111.7 95 68.4
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 7.9e-23 110.9 93 66.7
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 7.9e-23 110.9 88 70.5
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 7.9e-23 110.9 99 65.7
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 7.9e-23 110.9 88 70.5
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 1.0e-22 110.5 95 65.3
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 1.0e-22 110.5 93 68.8
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 1.3e-22 110.2 93 65.6
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 1.3e-22 110.2 96 63.5
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 1.8e-22 109.8 91 64.8
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 1.8e-22 109.8 91 64.8
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 2.3e-22 109.4 91 64.8
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 2.3e-22 109.4 86 70.9
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 2.3e-22 109.4 60 93.3
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 3.0e-22 109.0 92 65.2
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 3.9e-22 108.6 97 64.9
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 3.9e-22 108.6 92 64.1
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 3.9e-22 108.6 92 64.1
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 3.9e-22 108.6 92 64.1
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 3.9e-22 108.6 92 65.2
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 3.9e-22 108.6 96 65.6
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 5.1e-22 108.2 93 63.4
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 5.1e-22 108.2 93 63.4
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 5.1e-22 108.2 93 65.6
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 5.1e-22 108.2 93 65.6
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 6.7e-22 107.8 93 64.5
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 6.7e-22 107.8 90 68.9
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 8.7e-22 107.5 92 64.1
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 8.7e-22 107.5 67 82.1
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 8.7e-22 107.5 96 65.6
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 1.1e-21 107.1 96 60.4
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 1.5e-21 106.7 95 62.1
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.5e-21 106.7 91 68.1
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 1.5e-21 106.7 95 62.1
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 1.9e-21 106.3 88 70.5
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 1.9e-21 106.3 95 62.1
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 1.9e-21 106.3 91 68.1
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.9e-21 106.3 92 65.2
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 3.3e-21 105.5 130 50.0
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 5.6e-21 104.8 95 61.1
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 7.4e-21 104.4 86 66.3
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 9.6e-21 104.0 88 68.2
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.3e-20 103.6 89 64.0
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 2.1e-20 102.8 92 63.0
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 2.8e-20 102.4 83 67.5
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 2.8e-20 102.4 92 63.0
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 4.8e-20 101.7 62 83.9
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 4.8e-20 101.7 94 62.8
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 6.2e-20 101.3 96 61.5
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 6.2e-20 101.3 56 91.1
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 1.1e-19 100.5 119 55.5
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 1.1e-19 100.5 84 67.9
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 1.1e-19 100.5 89 65.2
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 2.4e-19 99.4 55 87.3
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 3.1e-19 99.0 57 84.2
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 4.0e-19 98.6 93 60.2
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 5.3e-19 98.2 118 50.8
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 6.9e-19 97.8 132 48.5
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 1.2e-18 97.1 86 61.6
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 1.2e-18 97.1 83 67.5
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 5.8e-18 94.7 83 60.2
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 5.8e-18 94.7 96 61.5
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 7.6e-18 94.4 96 55.2
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 1.0e-17 94.0 58 77.6
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.3e-17 93.6 133 46.6
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 2.9e-17 92.4 55 83.6
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 3.8e-17 92.0 104 54.8
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 4.9e-17 91.7 119 52.1
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 4.9e-17 91.7 104 53.8
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 4.9e-17 91.7 82 63.4
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 4.9e-17 91.7 131 47.3
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 6.5e-17 91.3 86 57.0
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 6.5e-17 91.3 78 65.4
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 1.4e-16 90.1 51 88.2
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 1.9e-16 89.7 51 86.3
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 2.5e-16 89.4 86 60.5
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 4.2e-16 88.6 52 84.6
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 4.2e-16 88.6 90 54.4
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 5.5e-16 88.2 133 48.1
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 5.5e-16 88.2 87 52.9
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 7.1e-16 87.8 54 85.2
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 7.1e-16 87.8 53 84.9
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 2.1e-15 86.3 46 91.3
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 2.7e-15 85.9 91 57.1
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 3.5e-15 85.5 86 55.8
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 3.5e-15 85.5 48 87.5
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 4.6e-15 85.1 52 82.7
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 1.0e-14 84.0 48 85.4
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 1.8e-14 83.2 78 61.5
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 3.0e-14 82.4 75 57.3
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 6.7e-14 81.3 93 57.0
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 1.1e-13 80.5 82 57.3
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 1.5e-13 80.1 67 59.7
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 1.5e-13 80.1 92 54.3
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 2.5e-13 79.3 44 86.4
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 7.4e-13 77.8 41 95.1
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 1.3e-12 77.0 51 74.5
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 8.2e-12 74.3 42 85.7
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 6.9e-11 71.2 90 53.3
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 4.5e-10 68.6 40 85.0
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 1.3e-09 67.0 82 53.7
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 1.2e-07 60.5 91 45.1
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 4.6e-07 58.5 75 46.7
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 4.6e-07 58.5 65 49.2
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 6.1e-07 58.2 78 43.6
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 7.9e-07 57.8 78 46.2
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 7.9e-07 57.8 48 66.7
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 1.0e-06 57.4 76 46.1
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 1.3e-06 57.0 77 44.2
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 3.0e-06 55.8 80 46.2
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 3.0e-06 55.8 79 41.8
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 5.1e-06 55.1 80 42.5
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 5.1e-06 55.1 61 47.5
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 5.1e-06 55.1 79 41.8
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 6.7e-06 54.7 68 45.6
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 6.7e-06 54.7 76 40.8
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 8.7e-06 54.3 61 47.5
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 8.7e-06 54.3 61 47.5
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 8.7e-06 54.3 61 47.5
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 8.7e-06 54.3 61 47.5
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 8.7e-06 54.3 69 46.4


User provided reference genes

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