Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g079860 Medicago truncatula HOM05D009002 ORTHO05D012070 3.6e-88 328.2 160 100.0
Medtr2g078690 Medicago truncatula HOM05D000424 ORTHO05D000355 9.0e-31 137.5 73 93.2
Medtr2g060630 Medicago truncatula HOM05D000424 ORTHO05D000355 3.4e-30 135.6 73 91.8
TPR.G7961 Trifolium pratense HOM05D000424 ORTHO05D000355 2.2e-29 132.9 73 90.4
Ca_03528_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 1.9e-28 129.8 73 84.9
Psat0ss4650g0120 Pisum sativum HOM05D000424 ORTHO05D000355 2.3e-26 122.9 73 82.2
Lj1g0003427 Lotus japonicus HOM05D000424 ORTHO05D000355 2.5e-20 102.8 73 68.5
Glyma.13G273600 Glycine max HOM05D000424 ORTHO05D000355 3.2e-20 102.4 73 67.1
Medtr4g030050 Medicago truncatula HOM05D008161 ORTHO05D030178 4.2e-20 102.1 66 75.8
arahy.Tifrunner.gnm1.ann1.2M6GB4 Arachis hypogaea HOM05D000424 ORTHO05D000355 5.5e-20 101.7 73 69.9
arahy.Tifrunner.gnm1.ann1.MX8YYA Arachis hypogaea HOM05D000424 ORTHO05D000355 5.5e-20 101.7 73 69.9
arahy.Tifrunner.gnm1.ann1.HU2A4G Arachis hypogaea HOM05D000424 ORTHO05D000355 7.1e-20 101.3 73 69.9
arahy.Tifrunner.gnm1.ann1.E5BCQS Arachis hypogaea HOM05D000424 ORTHO05D000355 1.2e-19 100.5 73 68.5
Lalb_Chr14g0367221 Lupinus albus HOM05D000424 ORTHO05D000355 5.1e-18 95.1 73 63.0
Medtr8g040660 Medicago truncatula HOM05D009002 ORTHO05D012070 6.7e-18 94.7 70 61.4
VMungo1080G0876 Vigna mungo HOM05D000424 ORTHO05D000355 1.5e-17 93.6 73 63.0
CsaV3_7G021740 Cucumis sativus L. HOM05D000424 ORTHO05D000355 3.3e-17 92.4 72 61.1
CANSAT35G0249 Cannabis sativa HOM05D000424 ORTHO05D000355 7.4e-17 91.3 73 57.5
MELO3C013175.2 Cucumis melo HOM05D000424 ORTHO05D000355 1.3e-16 90.5 70 61.4
AT3G15200 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 2.8e-16 89.4 73 54.8
Medtr7g075210 Medicago truncatula HOM05D000424 ORTHO05D000355 2.8e-16 89.4 73 65.8
CiPaw.12G117200 Carya illinoinensis HOM05D000424 ORTHO05D000355 6.2e-16 88.2 73 61.6
Sed0005187 Sechium edule HOM05D000424 ORTHO05D000355 6.2e-16 88.2 72 56.9
TAR627G0861 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.8e-15 86.7 73 63.0
Aqoxy4G00696 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 2.4e-15 86.3 92 54.3
AL3G27590 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 3.1e-15 85.9 73 52.1
ClCG09G010720 Citrullus lanatus HOM05D000424 ORTHO05D000355 3.1e-15 85.9 72 56.9
Haze_09411 Corylus avellana HOM05D000424 ORTHO05D000355 4.0e-15 85.5 73 56.2
MD11G1253000 Malus domestica HOM05D000424 ORTHO05D000355 4.0e-15 85.5 73 54.8
Prupe.4G176100 Prunus persica HOM05D000424 ORTHO05D000355 4.0e-15 85.5 73 58.9
Carub.0003s1485 Capsella rubella HOM05D000424 ORTHO05D000355 1.2e-14 84.0 73 50.7
Cfa020605 Carpinus fangiana HOM05D000424 ORTHO05D000355 1.2e-14 84.0 73 54.8
TAR627G0143 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.2e-14 84.0 73 58.9
TWI38G2061 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 1.5e-14 83.6 73 54.8
Atru.chr2.2410 Acer truncatum HOM05D000424 ORTHO05D000355 2.0e-14 83.2 72 56.9
Aa31LG8G2400 Aethionema arabicum HOM05D000424 ORTHO05D000355 2.6e-14 82.8 73 52.1
DCAR_020995 Daucus carota HOM05D000424 ORTHO05D000355 2.6e-14 82.8 74 59.5
Nitab4.5_0000332g0170 Nicotiana tabacum HOM05D000424 ORTHO05D000355 3.4e-14 82.4 73 56.2
Phvul.005G075100 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 3.4e-14 82.4 66 62.1
Medtr2g094150 Medicago truncatula HOM05D009002 ORTHO05D012070 5.8e-14 81.6 65 61.5
CARHR090190 Cardamine hirsuta HOM05D000424 ORTHO05D000355 7.6e-14 81.3 73 49.3
THA.LOC104815560 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 7.6e-14 81.3 73 50.7
Medtr2g091150 Medicago truncatula HOM05D009002 ORTHO05D014231 1.0e-13 80.9 70 55.7
Peaxi162Scf00132g00014 Petunia axillaris HOM05D003471 ORTHO05D004079 1.0e-13 80.9 73 53.4
Peaxi162Scf00258g00620 Petunia axillaris HOM05D000424 ORTHO05D000355 1.0e-13 80.9 73 53.4
CSS0017032 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.3e-13 80.5 73 57.5
CSS0037313 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.3e-13 80.5 73 57.5
Nn1g06443 Nelumbo nucifera HOM05D000424 ORTHO05D000355 1.3e-13 80.5 73 52.1
Thhalv10022416m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.7e-13 80.1 73 47.9
HanXRQChr03g0070621 Helianthus annuus HOM05D000424 ORTHO05D000355 1.7e-13 80.1 74 56.8
Medtr0092s0070 Medicago truncatula HOM05D009002 ORTHO05D014231 1.7e-13 80.1 70 55.7
Cpa.g.sc131.84 Carica papaya HOM05D000424 ORTHO05D000355 2.2e-13 79.7 91 47.3
Actinidia31525 Actinidia chinensis HOM05D000424 ORTHO05D000355 4.9e-13 78.6 73 53.4
Cc05_g11750 Coffea canephora HOM05D000424 ORTHO05D000355 4.9e-13 78.6 73 57.5
PGR083G2098 Punica granatum HOM05D000424 ORTHO05D000355 4.9e-13 78.6 71 53.5
Solyc12g014000.3 Solanum lycopersicum HOM05D000424 ORTHO05D000355 4.9e-13 78.6 73 53.4
MSTRG.6819 Avicennia marina HOM05D000424 ORTHO05D000355 6.5e-13 78.2 73 57.5
Peaxi162Scf00000g00292 Petunia axillaris HOM05D000424 ORTHO05D000355 6.5e-13 78.2 73 53.4
Lj1P839T30 Lonicera japonica HOM05D000424 ORTHO05D000355 8.4e-13 77.8 73 56.2
Nitab4.5_0003033g0080 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.1e-12 77.4 73 56.2
PGSC0003DMG400015326 Solanum tuberosum HOM05D000424 ORTHO05D000355 1.1e-12 77.4 73 53.4
Sp3g13410 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.4e-12 77.0 74 50.0
Duzib213G0619 Durio zibethinus HOM05D000424 ORTHO05D000355 1.9e-12 76.6 73 53.4
ECA236G1506 Erigeron canadensis HOM05D000424 ORTHO05D000355 1.9e-12 76.6 74 54.1
Eucgr.F01165 Eucalyptus grandis HOM05D000424 ORTHO05D000355 2.5e-12 76.3 73 50.7
Medtr4g105040 Medicago truncatula HOM05D009002 ORTHO05D012070 2.5e-12 76.3 71 50.7
Medtr1g075820 Medicago truncatula HOM05D009002 ORTHO05D012070 3.2e-12 75.9 67 53.7
Sabra11G0101200 Salix brachista HOM05D000424 ORTHO05D000355 3.2e-12 75.9 73 52.1
A05p34270 Brassica napus HOM05D000424 ORTHO05D000355 5.5e-12 75.1 73 49.3
BolC5t33889H Brassica oleracea HOM05D000424 ORTHO05D000355 5.5e-12 75.1 73 49.3
BraA05t22248Z Brassica rapa HOM05D000424 ORTHO05D000355 5.5e-12 75.1 73 49.3
C05p52030 Brassica napus HOM05D000424 ORTHO05D000355 9.3e-12 74.3 73 49.3
Medtr7g079050 Medicago truncatula HOM05D009002 ORTHO05D012070 9.3e-12 74.3 65 53.8
Potri.011G115500 Populus trichocarpa HOM05D000424 ORTHO05D000355 9.3e-12 74.3 73 50.7
BcaB06g29544 Brassica carinata HOM05D000424 ORTHO05D000355 1.2e-11 73.9 73 49.3
Lsat_1_v5_gn_7_104501 Lactuca sativa HOM05D000424 ORTHO05D000355 1.2e-11 73.9 74 51.4
CAN.G1226.19 Capsicum annuum HOM05D000424 ORTHO05D000355 1.6e-11 73.6 73 47.9
Manes.15G089400 Manihot esculenta HOM05D000424 ORTHO05D000355 1.6e-11 73.6 73 50.7
Medtr7g112850 Medicago truncatula HOM05D009002 ORTHO05D012070 1.6e-11 73.6 65 52.3
Solyc03g093170.1 Solanum lycopersicum HOM05D000424 ORTHO05D000355 2.1e-11 73.2 68 52.9
Medtr4g119460 Medicago truncatula HOM05D009002 ORTHO05D012070 2.7e-11 72.8 65 53.8
Ah.05g169850 Amaranthus hybridus HOM05D000424 ORTHO05D000355 3.5e-11 72.4 72 50.0
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 4.6e-11 72.0 75 49.3
Sc03g0010190 Simmondsia chinensis HOM05D000424 ORTHO05D000355 6.1e-11 71.6 73 46.6
Medtr1g014310 Medicago truncatula HOM05D009002 ORTHO05D012070 7.9e-11 71.2 65 52.3
vmacro11889 Vaccinium macrocarpon HOM05D000424 ORTHO05D000355 7.9e-11 71.2 72 51.4
vmacro23189 Vaccinium macrocarpon HOM05D000424 ORTHO05D000355 7.9e-11 71.2 72 51.4
Medtr3g010980 Medicago truncatula HOM05D009002 ORTHO05D012070 1.0e-10 70.9 65 52.3
Medtr7g065860 Medicago truncatula HOM05D009002 ORTHO05D012070 1.0e-10 70.9 65 52.3
Medtr8g096290 Medicago truncatula HOM05D009002 ORTHO05D012070 1.0e-10 70.9 65 52.3
Medtr7g081140 Medicago truncatula HOM05D009002 ORTHO05D012070 1.3e-10 70.5 61 54.1
Medtr7g090670 Medicago truncatula HOM05D009002 ORTHO05D012070 1.8e-10 70.1 65 50.8
Thecc.07G096100 Theobroma cacao HOM05D000424 ORTHO05D000355 1.8e-10 70.1 73 49.3
MD03G1231900 Malus domestica HOM05D000424 ORTHO05D000355 3.0e-10 69.3 69 50.7
Medtr3g100465 Medicago truncatula HOM05D009002 ORTHO05D012070 3.0e-10 69.3 66 50.0
Rhsim06G0202600 Rhododendron simsii HOM05D000424 ORTHO05D000355 5.1e-10 68.6 73 49.3
SGA_v2.0_scaffold73G24233 Striga asiatica HOM05D000424 ORTHO05D000355 6.7e-10 68.2 73 47.9
Ciclev10007960m.g Citrus clementina HOM05D000424 ORTHO05D000355 1.1e-09 67.4 73 50.7
TAR627G0403 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.1e-09 67.4 60 55.0
AUR62018934 Chenopodium quinoa HOM05D000424 ORTHO05D000355 1.5e-09 67.0 72 47.2
AUR62027777 Chenopodium quinoa HOM05D000424 ORTHO05D000355 1.9e-09 66.6 72 47.2
ATR0605G069 Amborella trichopoda HOM05D000424 ORTHO05D000355 2.5e-09 66.2 76 47.4
Oeu051087.1 Olea europaea HOM05D000424 ORTHO05D000355 4.3e-09 65.5 51 58.8
Medtr3g079550 Medicago truncatula HOM05D009002 ORTHO05D012070 5.7e-09 65.1 65 50.8
Medtr4g103865 Medicago truncatula HOM05D009002 ORTHO05D012070 7.4e-09 64.7 65 50.8
Gorai.013G169200 Gossypium raimondii HOM05D000424 ORTHO05D000355 9.7e-09 64.3 73 47.9
Gohir.D13G152030 Gossypium hirsutum HOM05D000424 ORTHO05D000355 1.3e-08 63.9 73 47.9
Medtr8g066620 Medicago truncatula HOM05D009002 ORTHO05D012070 2.2e-08 63.2 65 49.2
Gohir.A13G147000 Gossypium hirsutum HOM05D000424 ORTHO05D000355 2.8e-08 62.8 73 47.9
EL10Ac1g01198 Beta vulgaris HOM05D002285 ORTHO05D004192 6.3e-08 61.6 72 41.7
SalBow6G2955 Salvia bowleyana HOM05D000424 ORTHO05D000355 8.2e-08 61.2 70 47.1
Sopen12g005750 Solanum pennellii HOM05D000424 ORTHO05D000355 1.1e-07 60.8 60 48.3
AUR62026706 Chenopodium quinoa HOM05D000424 ORTHO05D000355 5.3e-07 58.5 72 43.1
GSVIVG01014289001 Vitis vinifera HOM05D000424 ORTHO05D000355 9.0e-07 57.8 51 52.9
HPP92_002326 Vanilla planifolia HOM05D000424 ORTHO05D000355 1.5e-06 57.0 75 40.0
Os01g0151900 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 2.0e-06 56.6 95 36.8
SEGI_29131 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 4.5e-06 55.5 71 46.5
Zm00001eb335990 Zea mays HOM05D000424 ORTHO05D000355 4.5e-06 55.5 75 37.3
CDE04G1672 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 7.7e-06 54.7 74 36.5
Medtr2g095010 Medicago truncatula HOM05D000844 ORTHO05D012070 7.7e-06 54.7 52 51.9
Eucgr.G02199 Eucalyptus grandis HOM05D000424 ORTHO05D000355 1.0e-05 54.3 71 45.1


User provided reference genes

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