Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 7.6e-107 390.6 206 100.0
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 1.3e-71 273.5 209 75.6
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 8.8e-63 244.2 210 71.0
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 3.4e-59 232.3 207 68.6
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 8.5e-58 227.6 210 65.7
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 4.2e-57 225.3 221 62.9
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 5.5e-57 224.9 210 64.8
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 3.6e-56 222.2 211 67.8
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 4.7e-56 221.9 210 63.3
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 7.9e-56 221.1 221 61.5
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 7.4e-54 214.5 205 63.4
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 1.4e-52 210.3 211 60.7
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 1.3e-50 203.8 210 59.0
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 1.1e-49 200.7 203 62.1
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 7.2e-49 198.0 146 75.3
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 1.4e-47 193.7 208 60.1
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 1.4e-47 193.7 208 60.1
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 1.3e-45 187.2 211 59.2
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 1.4e-44 183.7 210 58.1
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 1.8e-44 183.3 209 59.3
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 1.0e-42 177.6 211 56.4
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 1.0e-42 177.6 213 53.1
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 6.5e-42 174.9 209 55.5
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 8.5e-42 174.5 215 54.4
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 2.7e-40 169.5 211 55.9
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 4.7e-40 168.7 214 53.3
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 8.0e-40 167.9 210 55.2
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 1.0e-39 167.5 213 54.0
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 2.3e-39 166.4 212 52.8
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 3.0e-39 166.0 210 55.2
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 3.0e-39 166.0 211 53.1
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 5.2e-39 165.2 209 54.5
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 6.8e-39 164.9 210 53.3
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 6.8e-39 164.9 210 55.7
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 2.6e-38 162.9 203 55.2
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 7.5e-38 161.4 203 52.7
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 9.8e-38 161.0 225 50.7
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 1.7e-37 160.2 160 61.2
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 1.7e-37 160.2 225 50.2
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 1.7e-37 160.2 211 53.1
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 3.7e-37 159.1 209 52.6
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 6.3e-37 158.3 215 53.0
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 8.3e-37 157.9 215 54.0
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 1.8e-36 156.8 212 52.4
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 1.8e-36 156.8 216 51.9
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 2.4e-36 156.4 209 53.6
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 2.4e-36 156.4 211 52.6
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 7.0e-36 154.8 210 51.4
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 7.0e-36 154.8 211 50.7
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.2e-35 154.1 211 51.7
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 1.6e-35 153.7 207 53.6
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 1.6e-35 153.7 214 50.9
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 4.5e-35 152.1 214 50.0
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 5.9e-35 151.8 211 51.2
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 7.7e-35 151.4 214 50.9
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 1.0e-34 151.0 211 50.7
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 1.0e-34 151.0 221 50.7
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 3.8e-34 149.1 210 50.5
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 8.6e-34 147.9 209 52.6
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 1.9e-33 146.7 210 51.0
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 2.5e-33 146.4 231 46.8
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 3.3e-33 146.0 210 51.4
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 7.2e-33 144.8 212 53.8
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 1.2e-32 144.1 209 51.2
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 6.1e-32 141.7 220 50.9
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 8.0e-32 141.4 181 52.5
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 1.0e-31 141.0 215 50.7
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 2.3e-31 139.8 209 50.2
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 4.0e-31 139.0 267 43.4
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 8.9e-31 137.9 216 50.0
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 3.4e-30 136.0 217 48.8
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 5.7e-30 135.2 221 48.0
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 1.3e-29 134.0 216 50.0
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 2.8e-29 132.9 216 49.5
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 3.7e-29 132.5 213 47.9
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 3.7e-29 132.5 209 47.8
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 6.3e-29 131.7 216 49.5
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 6.3e-29 131.7 245 42.0
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 1.1e-28 131.0 239 41.4
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 1.8e-28 130.2 213 47.4
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 1.8e-28 130.2 216 45.8
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 1.8e-28 130.2 245 44.1
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 3.1e-28 129.4 240 41.2
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 3.1e-28 129.4 228 47.8
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 7.0e-28 128.3 214 45.8
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 1.2e-27 127.5 220 45.5
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 2.7e-27 126.3 295 38.0
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 4.5e-27 125.6 217 48.8
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 5.9e-27 125.2 216 47.7
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 5.9e-27 125.2 242 43.8
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 7.8e-27 124.8 214 45.3
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 1.7e-26 123.6 215 48.8
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 2.3e-26 123.2 217 47.9
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 2.9e-26 122.9 221 46.2
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 2.9e-26 122.9 177 49.7
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 2.9e-26 122.9 180 48.3
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 3.8e-26 122.5 214 48.6
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 3.8e-26 122.5 215 47.4
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 5.0e-26 122.1 222 45.9
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 6.6e-26 121.7 216 47.2
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 6.6e-26 121.7 217 47.5
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 1.5e-25 120.6 216 46.8
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 1.5e-25 120.6 217 47.0
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 1.5e-25 120.6 217 45.6
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 1.9e-25 120.2 170 47.6
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 1.9e-25 120.2 210 45.7
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 3.3e-25 119.4 241 41.5
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 5.6e-25 118.6 246 41.5
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 7.3e-25 118.2 174 46.0
Psat3g198120 Pisum sativum HOM05D003369 ORTHO05D004089 1.6e-24 117.1 81 81.5
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 2.1e-24 116.7 219 45.7
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 2.1e-24 116.7 221 45.2
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 1.4e-23 114.0 243 41.6
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 8.9e-23 111.3 235 42.6
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 1.7e-21 107.1 242 42.1
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 6.4e-21 105.1 211 41.7
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 1.1e-20 104.4 219 42.0
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 1.8e-20 103.6 246 39.4
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 5.4e-20 102.1 209 43.1
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 3.5e-19 99.4 240 38.3
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 7.8e-19 98.2 149 48.3
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 1.7e-18 97.1 156 48.1
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 3.9e-18 95.9 237 38.4
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 1.9e-17 93.6 241 36.9
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 9.5e-17 91.3 242 36.8
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 6.2e-16 88.6 228 35.5
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 1.4e-15 87.4 213 37.1
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 4.0e-15 85.9 238 35.7
PGSC0003DMG400011657 Solanum tuberosum HOM05D003369 ORTHO05D004089 6.8e-15 85.1 243 37.4
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 8.9e-15 84.7 236 35.6
MSTRG.8884 Avicennia marina HOM05D003369 ORTHO05D004089 4.9e-13 79.0 125 44.0
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 4.9e-13 79.0 178 39.3
CSS0040829 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 8.3e-13 78.2 72 58.3
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 3.2e-12 76.3 178 38.8
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 3.5e-11 72.8 247 35.2
Lsat_1_v5_gn_8_20221 Lactuca sativa HOM05D003369 ORTHO05D004089 7.8e-11 71.6 163 38.0
QL93p0201_0001 Quercus lobata HOM05D003369 ORTHO05D020257 1.3e-10 70.9 82 54.9
Lsat_1_v5_gn_8_162600 Lactuca sativa HOM05D003369 ORTHO05D004089 1.7e-10 70.5 158 39.2
CDE06G0307 Ceratophyllum demersum HOM05D001225 ORTHO05D001252 1.9e-09 67.0 154 35.1
Lsat_1_v5_gn_8_135680 Lactuca sativa HOM05D003369 ORTHO05D004089 3.3e-09 66.2 158 38.0
Sc05g0004500 Simmondsia chinensis HOM05D003369 ORTHO05D004089 9.5e-09 64.7 77 49.4
FAN12G0023 Fragaria x ananassa HOM05D003369 ORTHO05D020257 1.2e-08 64.3 89 53.9
SEGI_10703 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 1.4e-07 60.8 208 32.2
MELO3C026565.2 Cucumis melo HOM05D003369 ORTHO05D020257 1.5e-06 57.4 81 51.9
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 1.5e-06 57.4 145 33.1


User provided reference genes

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