Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 1.9e-63 245.7 131 100.0
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 1.7e-43 179.5 130 76.9
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 9.3e-42 173.7 132 75.8
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 1.3e-38 163.3 138 71.0
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 7.4e-31 137.5 94 76.6
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 1.1e-29 133.7 128 63.3
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 1.2e-28 130.2 130 58.5
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 9.9e-28 127.1 134 60.4
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 4.9e-27 124.8 134 62.7
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 6.4e-27 124.4 137 59.9
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 7.4e-23 110.9 109 56.9
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 1.3e-22 110.2 105 55.2
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 1.3e-22 110.2 79 68.4
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 1.3e-22 110.2 79 67.1
arahy.Tifrunner.gnm1.ann1.UGS5Z8 Arachis hypogaea HOM05D006666 ORTHO05D008276 2.8e-22 109.0 103 58.3
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 2.8e-22 109.0 123 50.4
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 2.8e-22 109.0 123 50.4
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 6.2e-22 107.8 106 56.6
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 8.1e-22 107.5 87 60.9
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 8.1e-22 107.5 123 49.6
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 8.1e-22 107.5 94 57.4
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.1e-21 107.1 123 49.6
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 1.4e-21 106.7 81 66.7
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 1.4e-21 106.7 124 51.6
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 1.4e-21 106.7 92 60.9
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 1.8e-21 106.3 109 55.0
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 1.8e-21 106.3 91 61.5
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 1.8e-21 106.3 94 58.5
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 1.8e-21 106.3 80 66.2
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 2.4e-21 105.9 132 48.5
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 2.4e-21 105.9 102 57.8
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 3.1e-21 105.5 131 48.1
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 4.0e-21 105.1 131 48.1
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 4.0e-21 105.1 80 65.0
EL10Ac7g16891 Beta vulgaris HOM05D006666 ORTHO05D008276 5.3e-21 104.8 86 60.5
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 6.9e-21 104.4 79 65.8
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 9.0e-21 104.0 79 65.8
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 9.0e-21 104.0 137 51.8
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 9.0e-21 104.0 92 60.9
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 9.0e-21 104.0 92 60.9
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 9.0e-21 104.0 104 55.8
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 1.2e-20 103.6 80 63.8
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 1.5e-20 103.2 79 60.8
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 2.0e-20 102.8 97 56.7
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 2.0e-20 102.8 133 51.1
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 2.6e-20 102.4 133 51.1
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 2.6e-20 102.4 133 51.1
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 3.4e-20 102.1 75 69.3
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 3.4e-20 102.1 132 50.0
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 5.8e-20 101.3 119 48.7
Actinidia02653 Actinidia chinensis HOM05D006666 ORTHO05D008276 1.0e-19 100.5 80 66.2
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 1.7e-19 99.8 75 66.7
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 2.2e-19 99.4 92 59.8
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 2.9e-19 99.0 83 59.0
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 2.9e-19 99.0 134 47.8
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 2.9e-19 99.0 106 54.7
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 3.8e-19 98.6 79 65.8
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 4.9e-19 98.2 110 52.7
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 6.5e-19 97.8 97 55.7
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 8.4e-19 97.4 79 63.3
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 8.4e-19 97.4 109 54.1
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 8.4e-19 97.4 80 63.8
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 1.4e-18 96.7 97 55.7
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 1.4e-18 96.7 101 55.4
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 1.4e-18 96.7 110 53.6
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 1.4e-18 96.7 83 60.2
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 1.4e-18 96.7 136 47.8
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 1.4e-18 96.7 75 66.7
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 1.4e-18 96.7 80 65.0
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 1.9e-18 96.3 104 55.8
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 1.9e-18 96.3 80 62.5
SEGI_19522 Sequoiadendron giganteum HOM05D006666 ORTHO05D008276 2.5e-18 95.9 114 47.4
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 3.2e-18 95.5 68 67.6
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 3.2e-18 95.5 112 53.6
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 3.2e-18 95.5 90 60.0
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 4.2e-18 95.1 135 43.0
MD06G1241100 Malus domestica HOM05D006666 ORTHO05D008276 5.5e-18 94.7 121 47.1
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 5.5e-18 94.7 72 68.1
Thhalv10009115m.g Eutrema salsugineum HOM05D006666 ORTHO05D008276 7.1e-18 94.4 76 63.2
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 9.3e-18 94.0 76 64.5
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 9.3e-18 94.0 76 64.5
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 9.3e-18 94.0 76 64.5
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 2.1e-17 92.8 75 62.7
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 2.1e-17 92.8 75 62.7
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 2.1e-17 92.8 75 62.7
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 2.1e-17 92.8 71 63.4
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 2.7e-17 92.4 75 62.7
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 2.7e-17 92.4 75 62.7
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 4.6e-17 91.7 75 62.7
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 4.6e-17 91.7 125 44.8
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 6.0e-17 91.3 76 63.2
Carub.0001s2658 Capsella rubella HOM05D006666 ORTHO05D008276 6.0e-17 91.3 75 64.0
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 7.9e-17 90.9 76 63.2
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 7.9e-17 90.9 86 62.8
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 1.3e-16 90.1 74 63.5
Aqoxy3G04334 Aquilegia oxysepala HOM05D006666 ORTHO05D008276 1.3e-16 90.1 86 54.7
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 1.8e-16 89.7 118 45.8
Mapoly0096s0047 Marchantia polymorpha HOM05D006666 ORTHO05D008276 2.3e-16 89.4 83 57.8
CDE04G3444 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 3.0e-16 89.0 105 53.3
CsaV3_1G005250 Cucumis sativus L. HOM05D006666 ORTHO05D008276 3.0e-16 89.0 111 47.7
HanXRQChr05g0141151 Helianthus annuus HOM05D006666 ORTHO05D008276 6.7e-16 87.8 106 46.2
AagrBONN_evm.TU.Sc2ySwM_344.686 Anthoceros agrestis HOM05D006666 ORTHO05D008276 1.5e-15 86.7 121 46.3
SMO143G0007 Selaginella moellendorffii HOM05D006666 ORTHO05D008276 2.5e-15 85.9 77 54.5
unitig_749.g13724 Utricularia gibba HOM05D006666 ORTHO05D008276 2.5e-15 85.9 134 47.8
Pp3c19_21970 Physcomitrium patens HOM05D006666 ORTHO05D008276 4.3e-15 85.1 72 56.9
QL10p036089 Quercus lobata HOM05D006666 ORTHO05D008276 3.1e-13 79.0 69 62.3
QL10p036477 Quercus lobata HOM05D006666 ORTHO05D008276 9.0e-13 77.4 61 65.6
Sabra04G0044800 Salix brachista HOM05D006666 ORTHO05D008276 9.0e-13 77.4 63 68.3
Sabra11G0106200 Salix brachista HOM05D006666 ORTHO05D008276 9.0e-13 77.4 63 68.3
Sabra17G0092500 Salix brachista HOM05D006666 ORTHO05D008276 9.0e-13 77.4 63 68.3
COL.COLO4_25502 Corchorus olitorius HOM05D006666 ORTHO05D008276 1.5e-12 76.6 60 73.3
Oeu038394.2 Olea europaea HOM05D006666 ORTHO05D008276 1.5e-12 76.6 62 67.7
MCO08G267 Micromonas commoda HOM05D006666 ORTHO05D008276 3.4e-12 75.5 101 42.6
PRCOL_00004364 Prasinoderma coloniale HOM05D006666 ORTHO05D008276 3.5e-09 65.5 63 46.0
Cre03.g203800 Chlamydomonas reinhardtii HOM05D006666 ORTHO05D008276 1.1e-07 60.5 43 58.1
COL.COLO4_37022 Corchorus olitorius HOM05D006666 ORTHO05D008276 4.3e-07 58.5 52 69.2
Hma1.2p1_0816F.1_g222980 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 9.7e-07 57.4 58 56.9


User provided reference genes

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