Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g074400 Medicago truncatula HOM05D018640 ORTHO05D019825 1.3e-117 426.4 209 100.0
TPR.G40112 Trifolium pratense HOM05D000254 ORTHO05D000165 1.4e-23 114.0 70 74.3
Medtr1g090980 Medicago truncatula HOM05D018640 ORTHO05D019825 9.0e-23 111.3 68 83.8
Medtr7g101260 Medicago truncatula HOM05D018640 ORTHO05D019825 9.3e-20 101.3 75 76.0
Medtr5g048750 Medicago truncatula HOM05D018640 ORTHO05D019825 1.0e-18 97.8 66 75.8
Glyma.11G176303 Glycine max HOM05D000254 ORTHO05D000165 8.7e-18 94.7 80 57.5
Medtr0061s0080 Medicago truncatula HOM05D018640 ORTHO05D019825 8.7e-18 94.7 75 70.7
TPR.G15547 Trifolium pratense HOM05D000254 ORTHO05D000165 7.4e-17 91.7 81 60.5
Glyma.10G055700 Glycine max HOM05D000254 ORTHO05D000165 1.6e-16 90.5 71 62.0
Glyma.01G054700 Glycine max HOM05D000254 ORTHO05D000165 1.8e-15 87.0 80 55.0
Lj1g0025794 Lotus japonicus HOM05D000254 ORTHO05D000165 2.4e-15 86.7 78 59.0
Lj3g0020482 Lotus japonicus HOM05D000254 ORTHO05D000165 2.4e-15 86.7 78 59.0
Lj5g0016684 Lotus japonicus HOM05D000254 ORTHO05D000165 2.4e-15 86.7 78 59.0
Lj1g0011213 Lotus japonicus HOM05D000254 ORTHO05D000165 7.6e-14 81.6 78 55.1
TPR.G8984 Trifolium pratense HOM05D000254 ORTHO05D000165 3.2e-12 76.3 86 48.8
CSS0034358 Camellia sinensis var. sinensis HOM05D000254 ORTHO05D000165 2.7e-11 73.2 73 52.1
Glyma.U031215 Glycine max HOM05D000254 ORTHO05D000165 3.5e-11 72.8 53 58.5
TPR.G208 Trifolium pratense HOM05D000254 ORTHO05D000165 6.1e-11 72.0 81 45.7
TWI38G0087 Tripterygium wilfordii HOM05D000254 ORTHO05D000165 7.9e-11 71.6 76 52.6
CSS0009137 Camellia sinensis var. sinensis HOM05D000254 ORTHO05D000165 1.8e-10 70.5 66 51.5
arahy.Tifrunner.gnm1.ann1.H07TP5 Arachis hypogaea HOM05D000254 ORTHO05D000165 8.7e-10 68.2 75 44.0
CSS0011566 Camellia sinensis var. sinensis HOM05D000254 ORTHO05D000165 8.7e-10 68.2 71 47.9
Glyma.16G122000 Glycine max HOM05D000254 ORTHO05D000165 8.7e-10 68.2 58 53.4
Ciclev10023986m.g Citrus clementina HOM05D000254 ORTHO05D000165 1.5e-09 67.4 72 48.6
PGR142G1242 Punica granatum HOM05D000254 ORTHO05D000165 1.9e-09 67.0 55 54.5
FvH4_7g16871 Fragaria vesca HOM05D000254 ORTHO05D000165 2.5e-09 66.6 77 48.1
arahy.Tifrunner.gnm1.ann1.4IK5SR Arachis hypogaea HOM05D000254 ORTHO05D000165 4.3e-09 65.9 75 42.7
arahy.Tifrunner.gnm1.ann1.ZHV4UG Arachis hypogaea HOM05D000254 ORTHO05D000165 4.3e-09 65.9 75 42.7
arahy.Tifrunner.gnm1.ann1.REY47L Arachis hypogaea HOM05D000254 ORTHO05D000165 5.7e-09 65.5 74 43.2
arahy.Tifrunner.gnm1.ann1.WE7X6Y Arachis hypogaea HOM05D000254 ORTHO05D000165 5.7e-09 65.5 74 43.2
arahy.Tifrunner.gnm1.ann1.XB47SY Arachis hypogaea HOM05D000254 ORTHO05D000165 5.7e-09 65.5 76 43.4
arahy.Tifrunner.gnm1.ann1.HH8KKF Arachis hypogaea HOM05D000254 ORTHO05D000165 7.4e-09 65.1 75 42.7
Thhalv10022584m.g Eutrema salsugineum HOM05D000254 ORTHO05D000165 7.4e-09 65.1 71 43.7
QL02p026275 Quercus lobata HOM05D000254 ORTHO05D000165 7.4e-09 65.1 74 45.9
arahy.Tifrunner.gnm1.ann1.T4IM50 Arachis hypogaea HOM05D000254 ORTHO05D000165 9.7e-09 64.7 74 43.2
Ciclev10030070m.g Citrus clementina HOM05D000254 ORTHO05D000165 1.3e-08 64.3 72 47.2
Ciclev10003344m.g Citrus clementina HOM05D000254 ORTHO05D000165 2.2e-08 63.5 46 56.5
RcHm_v2.0_Chr5g0062621 Rosa chinensis HOM05D000254 ORTHO05D000165 2.2e-08 63.5 74 45.9
TWI77G0761 Tripterygium wilfordii HOM05D000254 ORTHO05D000165 2.2e-08 63.5 74 45.9
arahy.Tifrunner.gnm1.ann1.Q3MTCJ Arachis hypogaea HOM05D000254 ORTHO05D000165 3.7e-08 62.8 74 44.6
CSS0007203 Camellia sinensis var. sinensis HOM05D000254 ORTHO05D000165 3.7e-08 62.8 79 43.0
CSS0027448 Camellia sinensis var. sinensis HOM05D000254 ORTHO05D000165 3.7e-08 62.8 76 40.8
CSS0044872 Camellia sinensis var. sinensis HOM05D000254 ORTHO05D000165 4.8e-08 62.4 78 43.6
Medtr6g022200 Medicago truncatula HOM05D000254 ORTHO05D010315 4.8e-08 62.4 60 46.7
RcHm_v2.0_Chr3g0453661 Rosa chinensis HOM05D000254 ORTHO05D000165 4.8e-08 62.4 74 41.9
Hund22241 Selenicereus undatus HOM05D000254 ORTHO05D000165 6.3e-08 62.0 62 45.2
CARHR180580 Cardamine hirsuta HOM05D000254 ORTHO05D000165 8.2e-08 61.6 66 47.0
TPR.G22178 Trifolium pratense HOM05D000254 ORTHO05D000165 8.2e-08 61.6 89 40.4
Lj3g0000312 Lotus japonicus HOM05D000254 ORTHO05D000165 1.1e-07 61.2 86 39.5
Lj3g0023878 Lotus japonicus HOM05D000254 ORTHO05D000165 1.1e-07 61.2 43 60.5
CSS0045922 Camellia sinensis var. sinensis HOM05D000254 ORTHO05D000165 1.4e-07 60.8 54 53.7
CANSAT78G1301 Cannabis sativa HOM05D000254 ORTHO05D000165 1.4e-07 60.8 74 44.6
Lj3g0003777 Lotus japonicus HOM05D000254 ORTHO05D000165 1.4e-07 60.8 67 44.8
arahy.Tifrunner.gnm1.ann1.TUZY7Z Arachis hypogaea HOM05D000254 ORTHO05D000165 1.8e-07 60.5 91 39.6
Ciclev10010399m.g Citrus clementina HOM05D000254 ORTHO05D000165 2.4e-07 60.1 42 61.9
Thhalv10024135m.g Eutrema salsugineum HOM05D000254 ORTHO05D000165 2.4e-07 60.1 68 41.2
TPR.G32941 Trifolium pratense HOM05D000254 ORTHO05D000165 2.4e-07 60.1 41 58.5
AT1G19260 Arabidopsis thaliana HOM05D000254 ORTHO05D000165 3.1e-07 59.7 66 45.5
Aqoxy1G03125 Aquilegia oxysepala HOM05D000254 ORTHO05D000165 4.1e-07 59.3 54 46.3
arahy.Tifrunner.gnm1.ann1.9Z3MNM Arachis hypogaea HOM05D000254 ORTHO05D000165 5.3e-07 58.9 42 54.8
Medtr5g031010 Medicago truncatula HOM05D018640 ORTHO05D019825 5.3e-07 58.9 50 68.0
arahy.Tifrunner.gnm1.ann1.A30LRN Arachis hypogaea HOM05D000254 ORTHO05D000165 6.9e-07 58.5 77 40.3
PSO591G0269 Papaver somniferum HOM05D000254 ORTHO05D000165 6.9e-07 58.5 44 56.8
Hund26328 Selenicereus undatus HOM05D000254 ORTHO05D000165 9.0e-07 58.2 62 41.9
CSS0006270 Camellia sinensis var. sinensis HOM05D000254 ORTHO05D000165 1.2e-06 57.8 78 41.0
Ciclev10023755m.g Citrus clementina HOM05D000254 ORTHO05D000165 1.2e-06 57.8 52 51.9
PSO675G1195 Papaver somniferum HOM05D000254 ORTHO05D000165 1.2e-06 57.8 41 61.0
Ciclev10024121m.g Citrus clementina HOM05D000254 ORTHO05D000165 1.5e-06 57.4 52 51.9
PSO765G0063 Papaver somniferum HOM05D000254 ORTHO05D000165 1.5e-06 57.4 42 57.1
arahy.Tifrunner.gnm1.ann1.E4BE46 Arachis hypogaea HOM05D000254 ORTHO05D019825 2.0e-06 57.0 75 40.0
CANSAT34G0001 Cannabis sativa HOM05D000254 ORTHO05D000165 2.0e-06 57.0 67 40.3
Thhalv10027556m.g Eutrema salsugineum HOM05D000254 ORTHO05D000165 2.6e-06 56.6 61 44.3
PSO170G0724 Papaver somniferum HOM05D000254 ORTHO05D000165 2.6e-06 56.6 42 57.1
THA.LOC104827337 Tarenaya hassleriana HOM05D000254 ORTHO05D000165 2.6e-06 56.6 85 37.6
THA.LOC104827361 Tarenaya hassleriana HOM05D000254 ORTHO05D000165 2.6e-06 56.6 85 37.6
Thhalv10012204m.g Eutrema salsugineum HOM05D000254 ORTHO05D000165 3.4e-06 56.2 66 43.9
Medtr8g032820 Medicago truncatula HOM05D000254 ORTHO05D000165 4.5e-06 55.8 43 55.8
PSO782G0797 Papaver somniferum HOM05D000254 ORTHO05D000165 4.5e-06 55.8 42 54.8
Ciclev10013598m.g Citrus clementina HOM05D000254 ORTHO05D000165 5.9e-06 55.5 46 54.3
Ciclev10017601m.g Citrus clementina HOM05D000254 ORTHO05D000165 5.9e-06 55.5 46 54.3
PSO170G5876 Papaver somniferum HOM05D000254 ORTHO05D000165 5.9e-06 55.5 42 57.1
TWI15G1142 Tripterygium wilfordii HOM05D000254 ORTHO05D000165 5.9e-06 55.5 76 39.5
CARHR261160 Cardamine hirsuta HOM05D000254 ORTHO05D000165 7.7e-06 55.1 66 39.4
Glyma.19G047200 Glycine max HOM05D000254 ORTHO05D000165 1.0e-05 54.7 33 69.7
Medtr7g097140 Medicago truncatula HOM05D018640 ORTHO05D261613 1.0e-05 54.7 36 72.2


User provided reference genes

Program Settings