Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g072690 Medicago truncatula HOM05D002428 ORTHO05D008664 1.0e-176 623.6 393 100.0
Psat6g141320 Pisum sativum HOM05D002428 ORTHO05D008664 1.1e-127 460.7 397 79.1
TPR.G1546 Trifolium pratense HOM05D002428 ORTHO05D008664 3.7e-118 429.1 401 77.8
Ca_09779_v3 Cicer arietinum L. HOM05D002428 ORTHO05D008664 6.3e-118 428.3 401 71.8
Glyma.10G192300 Glycine max HOM05D002428 ORTHO05D008664 4.8e-94 349.0 399 65.7
Glyma.20G198100 Glycine max HOM05D002428 ORTHO05D008664 4.8e-94 349.0 397 66.2
Lj5g0020317 Lotus japonicus HOM05D002428 ORTHO05D008664 1.7e-86 323.9 378 64.6
arahy.Tifrunner.gnm1.ann1.HBBQ58 Arachis hypogaea HOM05D002428 ORTHO05D008664 2.0e-84 317.0 394 59.6
arahy.Tifrunner.gnm1.ann1.N1R11Y Arachis hypogaea HOM05D002428 ORTHO05D008664 2.0e-84 317.0 404 58.4
Lalb_Chr02g0150781 Lupinus albus HOM05D002428 ORTHO05D008664 8.8e-80 301.6 370 61.1
Potri.001G049900 Populus trichocarpa HOM05D002428 ORTHO05D008664 7.0e-69 265.4 382 56.0
Ciclev10005170m.g Citrus clementina HOM05D002428 ORTHO05D008664 5.9e-68 262.3 302 51.7
Thecc.04G206600 Theobroma cacao HOM05D002428 ORTHO05D008664 5.0e-67 259.2 377 52.0
TWI73G0822 Tripterygium wilfordii HOM05D002428 ORTHO05D008664 3.3e-66 256.5 340 58.8
Cpa.g.sc59.123 Carica papaya HOM05D002428 ORTHO05D008664 4.3e-66 256.1 303 55.1
Duzib151G0475 Durio zibethinus HOM05D002428 ORTHO05D008664 4.3e-66 256.1 300 53.7
Nitab4.5_0004974g0040 Nicotiana tabacum HOM05D002428 ORTHO05D008664 2.1e-65 253.8 370 57.3
COL.COLO4_20264 Corchorus olitorius HOM05D002428 ORTHO05D008664 2.8e-65 253.4 391 51.9
Phvul.010G104000 Phaseolus vulgaris HOM05D002428 ORTHO05D008664 6.1e-65 252.3 361 58.7
Aa31LG9G3990 Aethionema arabicum HOM05D002428 ORTHO05D008664 1.4e-64 251.1 355 55.5
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 8.9e-64 248.4 304 51.0
CSS0042862 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 1.5e-63 247.7 243 56.4
Carub.0007s2880 Capsella rubella HOM05D002428 ORTHO05D008664 2.6e-63 246.9 382 55.5
Gohir.D10G143300 Gossypium hirsutum HOM05D002428 ORTHO05D008664 2.6e-63 246.9 273 54.6
Sabra01G0034800 Salix brachista HOM05D002428 ORTHO05D008664 5.7e-63 245.7 261 57.5
Oeu006723.1 Olea europaea HOM05D002428 ORTHO05D008664 1.7e-62 244.2 280 54.6
Hma1.2p1_4144F.1_g338390 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 3.7e-62 243.0 277 55.6
Prupe.1G004900 Prunus persica HOM05D002428 ORTHO05D008664 6.4e-62 242.3 328 52.4
TAR365G0194 Trochodendron aralioides HOM05D002428 ORTHO05D008664 1.4e-61 241.1 281 53.4
CARHR219440 Cardamine hirsuta HOM05D002428 ORTHO05D008664 1.8e-61 240.7 272 52.9
Gorai.011G160100 Gossypium raimondii HOM05D002428 ORTHO05D008664 2.4e-61 240.4 281 53.0
RcHm_v2.0_Chr4g0385901 Rosa chinensis HOM05D002428 ORTHO05D008664 2.4e-61 240.4 271 51.3
Sed0003366 Sechium edule HOM05D002428 ORTHO05D008664 4.1e-61 239.6 383 49.3
MELO3C006321.2 Cucumis melo HOM05D002428 ORTHO05D008664 5.4e-61 239.2 399 47.4
CsaV3_3G011080 Cucumis sativus L. HOM05D002428 ORTHO05D008664 9.2e-61 238.4 399 50.9
Manes.15G051900 Manihot esculenta HOM05D002428 ORTHO05D008664 9.2e-61 238.4 259 54.8
CANSAT78G1408 Cannabis sativa HOM05D002428 ORTHO05D008664 3.5e-60 236.5 284 51.8
THA.LOC104808718 Tarenaya hassleriana HOM05D002428 ORTHO05D008664 3.5e-60 236.5 272 53.3
QL06p024024 Quercus lobata HOM05D002428 ORTHO05D008664 1.3e-59 234.6 268 54.5
Sp7g11440 Schrenkiella parvula HOM05D002428 ORTHO05D008664 1.3e-59 234.6 272 52.9
Dinv38250 Davidia involucrata HOM05D002428 ORTHO05D008664 2.3e-59 233.8 285 52.6
PGR142G3513 Punica granatum HOM05D002428 ORTHO05D008664 3.0e-59 233.4 283 50.9
Solyc09g091830.4 Solanum lycopersicum HOM05D002428 ORTHO05D008664 5.0e-59 232.6 280 53.2
GSVIVG01029077001 Vitis vinifera HOM05D002428 ORTHO05D008664 5.0e-59 232.6 232 62.1
CiPaw.01G122800 Carya illinoinensis HOM05D002428 ORTHO05D008664 8.6e-59 231.9 398 47.5
BcaC02g09399 Brassica carinata HOM05D002428 ORTHO05D008664 1.1e-58 231.5 294 54.1
MBI07_g22621_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D008664 1.1e-58 231.5 282 49.3
MD04G1005000 Malus domestica HOM05D002428 ORTHO05D008664 2.5e-58 230.3 259 55.2
C04p42250 Brassica napus HOM05D002428 ORTHO05D008664 3.3e-58 229.9 294 54.8
BolC4t25803H Brassica oleracea HOM05D002428 ORTHO05D008664 3.3e-58 229.9 294 54.4
Rhsim09G0054700 Rhododendron simsii HOM05D002428 ORTHO05D008664 4.3e-58 229.6 262 51.5
Gohir.A10G122700 Gossypium hirsutum HOM05D002428 ORTHO05D008664 5.6e-58 229.2 273 52.0
PGSC0003DMG400029637 Solanum tuberosum HOM05D002428 ORTHO05D008664 5.6e-58 229.2 277 52.0
FAN12G4076 Fragaria x ananassa HOM05D002428 ORTHO05D008664 7.3e-58 228.8 354 50.6
Sopen09g034720 Solanum pennellii HOM05D002428 ORTHO05D008664 7.3e-58 228.8 279 51.3
Rhsim09G0054100 Rhododendron simsii HOM05D002428 ORTHO05D008664 1.6e-57 227.6 262 51.1
BcaB03g16059 Brassica carinata HOM05D002428 ORTHO05D008664 2.8e-57 226.9 294 54.1
Thhalv10025497m.g Eutrema salsugineum HOM05D002428 ORTHO05D008664 2.8e-57 226.9 264 53.8
CAN.G500.15 Capsicum annuum HOM05D002428 ORTHO05D008664 6.2e-57 225.7 276 51.8
FvH4_4g00470 Fragaria vesca HOM05D002428 ORTHO05D008664 6.2e-57 225.7 272 50.4
AL7G42860 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 1.4e-56 224.6 386 50.5
Migut.G00668 Erythranthe guttata HOM05D002428 ORTHO05D008664 3.1e-56 223.4 285 49.5
Nn1g07803 Nelumbo nucifera HOM05D002428 ORTHO05D008664 4.4e-55 219.5 281 50.9
CSS0043127 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 5.8e-55 219.2 265 54.7
Cc03_g07620 Coffea canephora HOM05D002428 ORTHO05D008664 5.8e-55 219.2 278 51.8
Aqoxy2G03893 Aquilegia oxysepala HOM05D002428 ORTHO05D008664 7.5e-55 218.8 290 52.1
MSTRG.9823 Avicennia marina HOM05D002428 ORTHO05D008664 9.8e-55 218.4 277 48.0
ClCG05G003410 Citrullus lanatus HOM05D002428 ORTHO05D008664 9.8e-55 218.4 350 51.4
Peaxi162Scf00047g00729 Petunia axillaris HOM05D002428 ORTHO05D008664 1.3e-54 218.0 266 54.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.2e-54 217.2 272 49.3
Nitab4.5_0003750g0020 Nicotiana tabacum HOM05D002428 ORTHO05D008664 3.7e-54 216.5 384 52.1
Haze_11594 Corylus avellana HOM05D002428 ORTHO05D008664 1.4e-53 214.5 482 40.9
Lsat_1_v5_gn_6_59880 Lactuca sativa HOM05D002428 ORTHO05D008664 1.9e-53 214.2 281 49.1
HPP92_025384 Vanilla planifolia HOM05D002428 ORTHO05D008664 4.1e-53 213.0 246 49.6
Eucgr.H00072 Eucalyptus grandis HOM05D002428 ORTHO05D008664 5.4e-53 212.6 222 53.2
ECA233G2351 Erigeron canadensis HOM05D002428 ORTHO05D008664 9.2e-53 211.8 267 50.2
SalBow8G5518 Salvia bowleyana HOM05D002428 ORTHO05D008664 9.2e-53 211.8 282 49.6
BraA04t16542Z Brassica rapa HOM05D002428 ORTHO05D008664 1.6e-52 211.1 296 51.0
ATR0736G155 Amborella trichopoda HOM05D002428 ORTHO05D008664 1.0e-51 208.4 358 50.8
unitig_747.g21693 Utricularia gibba HOM05D002428 ORTHO05D008664 1.7e-51 207.6 285 44.9
Zm00001eb426530 Zea mays HOM05D002428 ORTHO05D008664 1.7e-51 207.6 226 51.8
DCAR_026600 Daucus carota HOM05D002428 ORTHO05D008664 5.0e-51 206.1 294 49.0
Os04g0514400 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D008664 8.6e-51 205.3 216 57.4
A04p08510 Brassica napus HOM05D002428 ORTHO05D008664 1.5e-50 204.5 296 50.7
HanXRQChr07g0185701 Helianthus annuus HOM05D002428 ORTHO05D008664 2.5e-50 203.8 268 50.0
Sc13g0000090 Simmondsia chinensis HOM05D002428 ORTHO05D008664 2.1e-49 200.7 189 58.7
CSS0022946 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 2.8e-49 200.3 245 52.2
Actinidia35874 Actinidia chinensis HOM05D002428 ORTHO05D008664 3.1e-48 196.8 210 61.9
EL10Ac9g21669 Beta vulgaris HOM05D002428 ORTHO05D008664 3.1e-48 196.8 248 48.0
vmacro00485 Vaccinium macrocarpon HOM05D002428 ORTHO05D008664 5.2e-48 196.1 332 42.2
Ah.01g006100 Amaranthus hybridus HOM05D002428 ORTHO05D008664 3.4e-47 193.4 207 53.1
Ah.01g018930 Amaranthus hybridus HOM05D002428 ORTHO05D008664 2.9e-46 190.3 190 55.8
PSO017G5948 Papaver somniferum HOM05D002428 ORTHO05D008664 6.4e-46 189.1 250 45.6
SGA_v2.0_scaffold72G24054 Striga asiatica HOM05D002428 ORTHO05D008664 1.4e-45 188.0 286 45.1
PSO063G5917 Papaver somniferum HOM05D002428 ORTHO05D008664 5.4e-45 186.0 250 45.2
Prupe.3G076100 Prunus persica HOM05D002428 ORTHO05D008664 4.6e-44 183.0 181 57.5
Atru.chr4.1737 Acer truncatum HOM05D002428 ORTHO05D008664 1.1e-42 178.3 165 58.2
SEGI_22388 Sequoiadendron giganteum HOM05D002428 ORTHO05D008664 1.9e-42 177.6 199 50.8
Actinidia25626 Actinidia chinensis HOM05D002428 ORTHO05D008664 3.3e-42 176.8 200 54.5
CDE08G1693 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 2.4e-40 170.6 250 42.4
Lj6A561G51 Lonicera japonica HOM05D002428 ORTHO05D008664 5.2e-40 169.5 309 40.8
Cfa014927 Carpinus fangiana HOM05D002428 ORTHO05D008664 7.6e-39 165.6 362 45.9
AUR62010416 Chenopodium quinoa HOM05D002428 ORTHO05D008664 7.6e-39 165.6 201 48.3
Mapoly0004s0042 Marchantia polymorpha HOM05D002428 ORTHO05D008664 2.9e-38 163.7 217 41.0
Pp3c19_7640 Physcomitrium patens HOM05D002428 ORTHO05D008664 2.7e-36 157.1 203 44.8
AUR62016799 Chenopodium quinoa HOM05D002428 ORTHO05D008664 1.7e-35 154.5 224 43.8
CBR_g30251 Chara braunii HOM05D002428 ORTHO05D008664 1.9e-34 151.0 220 41.8
AT4G13670 Arabidopsis thaliana HOM05D002428 ORTHO05D008664 1.1e-32 145.2 271 54.6
AagrBONN_evm.TU.Sc2ySwM_344.4007 Anthoceros agrestis HOM05D002428 ORTHO05D008664 5.8e-31 139.4 210 41.9
CDE05G2575 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 5.8e-31 139.4 329 44.7
SMO358G0076 Selaginella moellendorffii HOM05D002428 ORTHO05D008664 1.3e-30 138.3 302 33.8
AL7G42850 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 9.0e-16 89.0 166 38.0
Oeu022362.1 Olea europaea HOM05D002428 ORTHO05D008664 3.4e-15 87.0 127 48.0
Prupe.1G083800 Prunus persica HOM05D002020 ORTHO05D002046 4.5e-15 86.7 54 79.6
Hma1.2p1_1076F.1_g254570 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 3.5e-12 77.0 77 55.8
MCO13G181 Micromonas commoda HOM05D002428 ORTHO05D008664 1.7e-06 58.2 65 49.2


User provided reference genes

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