Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 3.8e-154 548.1 274 100.0
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 1.4e-121 439.9 275 83.6
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 3.2e-113 412.1 271 79.7
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 2.3e-111 406.0 274 74.8
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 7.7e-107 391.0 274 72.6
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 9.4e-105 384.0 232 81.5
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 9.4e-105 384.0 232 81.5
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.8e-103 379.8 225 81.3
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 7.5e-102 374.4 226 80.5
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 2.8e-101 372.5 226 78.8
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 4.2e-97 358.6 223 78.9
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 5.9e-91 338.2 226 73.9
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 8.6e-90 334.3 227 72.2
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 4.0e-87 325.5 226 70.4
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 4.0e-87 325.5 223 70.4
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 4.0e-87 325.5 222 72.1
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.2e-86 323.9 273 61.9
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 9.8e-86 320.9 227 69.6
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 2.9e-85 319.3 226 70.4
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 3.7e-85 318.9 226 68.6
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 3.7e-85 318.9 226 69.5
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 8.3e-85 317.8 227 68.7
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 1.1e-84 317.4 221 68.8
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 1.1e-84 317.4 269 62.1
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 1.4e-84 317.0 226 69.0
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 2.4e-84 316.2 225 68.0
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 4.1e-84 315.5 226 66.8
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 9.2e-84 314.3 226 68.6
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 1.6e-83 313.5 221 68.3
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.6e-83 313.5 226 68.1
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 2.0e-83 313.2 273 62.3
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 4.6e-83 312.0 273 60.4
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 5.9e-83 311.6 226 68.1
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 5.9e-83 311.6 225 67.1
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 5.9e-83 311.6 228 67.5
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 6.6e-82 308.1 225 68.0
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.9e-81 306.6 226 66.8
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.5e-81 306.2 226 66.8
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 3.3e-81 305.8 230 64.3
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 5.6e-81 305.1 227 64.8
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 7.3e-81 304.7 226 67.7
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 9.5e-81 304.3 227 65.6
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 1.2e-80 303.9 226 65.5
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 1.6e-80 303.5 227 66.5
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 3.6e-80 302.4 229 67.2
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 4.7e-80 302.0 226 65.9
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 6.2e-80 301.6 226 65.5
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 6.2e-80 301.6 222 65.8
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 8.0e-80 301.2 227 64.8
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 8.0e-80 301.2 227 65.2
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 1.1e-79 300.8 226 65.0
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 1.1e-79 300.8 225 65.8
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 2.3e-79 299.7 226 64.6
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 2.3e-79 299.7 226 65.0
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 4.0e-79 298.9 227 64.3
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 6.8e-79 298.1 225 64.9
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 6.8e-79 298.1 227 63.9
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 1.5e-78 297.0 226 64.2
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 2.0e-78 296.6 227 63.9
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 3.4e-78 295.8 227 63.9
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 4.4e-78 295.4 236 65.3
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 4.4e-78 295.4 228 64.5
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 4.4e-78 295.4 228 63.6
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 4.4e-78 295.4 226 63.7
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 7.5e-78 294.7 223 66.8
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 7.5e-78 294.7 226 63.3
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.7e-77 293.5 218 66.5
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 1.7e-77 293.5 230 62.6
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 4.9e-77 292.0 224 65.6
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 1.4e-76 290.4 233 62.2
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 2.0e-75 286.6 228 62.7
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 4.6e-75 285.4 235 58.7
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 3.0e-74 282.7 228 62.7
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.1e-73 280.8 212 62.7
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 2.5e-73 279.6 220 61.4
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 3.3e-73 279.3 235 60.4
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 9.5e-73 277.7 235 58.3
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 1.2e-72 277.3 222 60.4
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 2.1e-72 276.6 278 55.8
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 2.8e-72 276.2 303 51.2
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 3.1e-71 272.7 232 58.6
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 3.1e-71 272.7 207 61.4
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 8.9e-71 271.2 228 58.3
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 3.4e-70 269.2 233 55.4
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 7.5e-70 268.1 187 70.6
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 1.2e-67 260.8 189 68.8
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 1.6e-67 260.4 212 58.0
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 3.5e-67 259.2 170 72.4
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 3.0e-66 256.1 277 49.8
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 3.0e-66 256.1 253 53.8
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 2.5e-65 253.1 175 70.9
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 5.6e-65 251.9 187 65.2
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 1.2e-64 250.8 226 60.2
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 8.9e-63 244.6 234 55.1
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 4.9e-61 238.8 229 52.8
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.1e-59 233.4 234 50.0
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 3.5e-59 232.6 224 50.4
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 3.0e-58 229.6 232 50.4
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 6.6e-58 228.4 214 51.9
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 6.2e-56 221.9 120 89.2
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 6.4e-53 211.8 184 56.5
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 9.6e-49 198.0 152 62.5
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 5.3e-47 192.2 143 65.7
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 1.4e-31 141.0 217 37.8
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 1.1e-28 131.3 222 38.7
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 3.3e-25 119.8 96 68.8
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 9.0e-23 111.7 169 39.6
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 2.0e-22 110.5 169 39.1
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 2.9e-21 106.7 174 33.9
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 1.9e-20 104.0 216 35.2
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 8.8e-18 95.1 161 34.2
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 2.5e-17 93.6 45 95.6
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 2.5e-17 93.6 45 95.6
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 1.7e-16 90.9 178 34.3
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 2.8e-16 90.1 76 53.9
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 3.1e-15 86.7 136 45.6
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 4.4e-09 66.2 112 35.7
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.4e-07 60.5 67 46.3


User provided reference genes

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