Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g070150 Medicago truncatula HOM05D013820 ORTHO05D000007 1.5e-89 332.8 161 100.0
TPR.G11139 Trifolium pratense HOM05D000003 ORTHO05D000007 3.5e-51 205.3 177 60.5
TPR.G29398 Trifolium pratense HOM05D000003 ORTHO05D000007 6.7e-50 201.1 177 59.3
TPR.G23327 Trifolium pratense HOM05D000737 ORTHO05D000581 2.2e-32 142.9 169 47.9
TPR.G39703 Trifolium pratense HOM05D000003 ORTHO05D000007 2.9e-29 132.5 170 43.5
TPR.G28232 Trifolium pratense HOM05D000003 ORTHO05D000007 2.5e-28 129.4 177 43.5
TPR.G16044 Trifolium pratense HOM05D000003 ORTHO05D000007 9.7e-25 117.5 173 39.3
Medtr3g026903 Medicago truncatula HOM05D000003 ORTHO05D000007 2.2e-24 116.3 148 50.0
TPR.G14601 Trifolium pratense HOM05D000003 ORTHO05D000007 8.2e-24 114.4 158 41.1
TPR.G20742 Trifolium pratense HOM05D000003 ORTHO05D000007 4.1e-23 112.1 107 49.5
TPR.G18288 Trifolium pratense HOM05D000003 ORTHO05D000006 1.2e-22 110.5 143 42.7
TPR.G4588 Trifolium pratense HOM05D061595 ORTHO05D000007 3.4e-22 109.0 143 42.0
TPR.G24275 Trifolium pratense HOM05D000003 ORTHO05D000007 1.7e-21 106.7 150 41.3
TPR.G35802 Trifolium pratense HOM05D000003 ORTHO05D000007 5.0e-21 105.1 145 39.3
TPR.G14379 Trifolium pratense HOM05D000003 ORTHO05D000007 8.5e-21 104.4 145 40.7
TPR.G17627 Trifolium pratense HOM05D000003 ORTHO05D000007 1.1e-20 104.0 136 39.0
TPR.G22431 Trifolium pratense HOM05D000003 ORTHO05D000007 1.1e-20 104.0 143 40.6
TPR.G24718 Trifolium pratense HOM05D000003 ORTHO05D000007 9.4e-20 100.9 187 36.9
Medtr1g054775 Medicago truncatula HOM05D000003 ORTHO05D000004 2.7e-19 99.4 167 35.9
Medtr2g083760 Medicago truncatula HOM05D013820 ORTHO05D000007 1.4e-18 97.1 95 57.9
Medtr2g450840 Medicago truncatula HOM05D013820 ORTHO05D000007 3.3e-17 92.4 99 55.6
Lj3g0016538 Lotus japonicus HOM05D000327 ORTHO05D000218 1.8e-15 86.7 155 32.9
Lj5g0014385 Lotus japonicus HOM05D000003 ORTHO05D000007 5.3e-15 85.1 156 30.8
Lj3g0001518 Lotus japonicus HOM05D000327 ORTHO05D000218 2.9e-13 79.3 128 32.0
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 5.0e-13 78.6 135 37.0
TPR.G17626 Trifolium pratense HOM05D000003 ORTHO05D000007 9.4e-12 74.3 64 50.0
TPR.G30519 Trifolium pratense HOM05D000003 ORTHO05D000007 2.7e-11 72.8 128 31.2
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.7e-10 68.2 79 36.7
TPR.G27775 Trifolium pratense HOM05D000003 ORTHO05D000007 6.7e-10 68.2 87 39.1
Lj6g0007219 Lotus japonicus HOM05D000003 ORTHO05D000007 8.8e-10 67.8 101 29.7
TPR.G18895 Trifolium pratense HOM05D000003 ORTHO05D000007 8.8e-10 67.8 46 60.9
TPR.G10050 Trifolium pratense HOM05D000003 ORTHO05D000006 1.1e-09 67.4 140 35.0
Lj5g0016382 Lotus japonicus HOM05D000003 ORTHO05D000007 2.0e-09 66.6 106 32.1
Gorai.N011700 Gossypium raimondii HOM05D000003 ORTHO05D000007 3.3e-09 65.9 62 38.7
Lj6g0027241 Lotus japonicus HOM05D000473 ORTHO05D000007 9.7e-09 64.3 94 31.9
Lj3g0024630 Lotus japonicus HOM05D000003 ORTHO05D000007 1.3e-08 63.9 96 30.2
vmacro16232 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.3e-08 63.9 164 29.3
Dinv25829 Davidia involucrata HOM05D000003 ORTHO05D000007 2.2e-08 63.2 60 40.0
TPR.G319 Trifolium pratense HOM05D000003 ORTHO05D000007 2.2e-08 63.2 46 58.7
Lj4g0014676 Lotus japonicus HOM05D000003 ORTHO05D000007 2.8e-08 62.8 94 29.8
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.7e-08 62.4 99 30.3
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.7e-08 62.4 99 30.3
TPR.G12161 Trifolium pratense HOM05D008547 ORTHO05D010515 3.7e-08 62.4 137 32.8
Lj3g0011245 Lotus japonicus HOM05D000003 ORTHO05D000007 4.8e-08 62.0 94 29.8
Medtr1g089610 Medicago truncatula HOM05D000003 ORTHO05D048945 4.8e-08 62.0 165 28.5
Gorai.011G227900 Gossypium raimondii HOM05D000003 ORTHO05D000007 6.3e-08 61.6 71 35.2
Medtr7g072770 Medicago truncatula HOM05D013820 ORTHO05D000007 6.3e-08 61.6 43 69.8
Lj2g0021603 Lotus japonicus HOM05D000003 ORTHO05D000007 1.1e-07 60.8 92 31.5
Lj4g0010109 Lotus japonicus HOM05D000003 ORTHO05D000007 1.1e-07 60.8 94 31.9
PSO017G1257 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-07 60.5 91 29.7
AUR62034456 Chenopodium quinoa HOM05D000091 ORTHO05D001510 1.8e-07 60.1 50 44.0
Lj2g0021734 Lotus japonicus HOM05D000003 ORTHO05D000006 1.8e-07 60.1 77 35.1
Lj5g0003428 Lotus japonicus HOM05D000003 ORTHO05D000007 1.8e-07 60.1 101 27.7
QL02p069773 Quercus lobata HOM05D000003 ORTHO05D000007 2.4e-07 59.7 93 30.1
Medtr5g070630 Medicago truncatula HOM05D013820 ORTHO05D000007 3.1e-07 59.3 55 56.4
Sabra15G0020800 Salix brachista HOM05D013820 ORTHO05D000007 3.1e-07 59.3 67 47.8
Gorai.003G070900 Gossypium raimondii HOM05D000003 ORTHO05D000007 4.1e-07 58.9 61 34.4
Lj5g0001706 Lotus japonicus HOM05D000003 ORTHO05D000007 4.1e-07 58.9 90 31.1
Lj1g0021200 Lotus japonicus HOM05D000003 ORTHO05D000007 7.0e-07 58.2 94 26.6
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 9.1e-07 57.8 99 26.3
Lj5g0009009 Lotus japonicus HOM05D000003 ORTHO05D000007 9.1e-07 57.8 99 27.3
Lj4g0026510 Lotus japonicus HOM05D000003 ORTHO05D000007 1.2e-06 57.4 163 25.2
Medtr4g122570 Medicago truncatula HOM05D000003 ORTHO05D000006 1.6e-06 57.0 44 56.8
Eucgr.C03006 Eucalyptus grandis HOM05D000003 ORTHO05D000007 2.0e-06 56.6 76 32.9
Eucgr.C03949 Eucalyptus grandis HOM05D000003 ORTHO05D000007 2.0e-06 56.6 76 32.9
Gorai.012G107100 Gossypium raimondii HOM05D000003 ORTHO05D000007 2.0e-06 56.6 52 36.5
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.6e-06 56.2 127 28.3
AUR62042607 Chenopodium quinoa HOM05D002059 ORTHO05D000007 2.6e-06 56.2 120 32.5
Gorai.003G058200 Gossypium raimondii HOM05D024731 ORTHO05D000007 2.6e-06 56.2 62 38.7
Lj1g0004894 Lotus japonicus HOM05D000003 ORTHO05D000007 2.6e-06 56.2 128 28.9
Lj3g0023340 Lotus japonicus HOM05D000003 ORTHO05D000007 2.6e-06 56.2 163 25.2
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 2.6e-06 56.2 99 29.3
Oeu048451.1 Olea europaea HOM05D000003 ORTHO05D000007 2.6e-06 56.2 56 44.6
QL12p006495 Quercus lobata HOM05D000003 ORTHO05D000007 2.6e-06 56.2 67 38.8
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.5e-06 55.8 59 44.1
Lj6g0024060 Lotus japonicus HOM05D021482 ORTHO05D000007 3.5e-06 55.8 162 22.2
arahy.Tifrunner.gnm1.ann1.244SBX Arachis hypogaea HOM05D000003 ORTHO05D000007 4.5e-06 55.5 101 33.7
Hma1.2p1_0828F.1_g225200 Hydrangea macrophylla HOM05D000003 ORTHO05D000007 5.9e-06 55.1 94 31.9
TPR.G23335 Trifolium pratense HOM05D000003 ORTHO05D000007 5.9e-06 55.1 94 27.7
LjContig00503g0020544 Lotus japonicus HOM05D000003 ORTHO05D000007 7.7e-06 54.7 100 31.0


User provided reference genes

Program Settings