Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g069860 Medicago truncatula HOM05D003989 ORTHO05D004626 2.4e-47 191.8 95 100.0
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 3.8e-21 104.8 84 64.3
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 5.0e-21 104.4 84 64.3
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 1.1e-20 103.2 67 76.1
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 1.1e-20 103.2 84 64.3
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 1.5e-20 102.8 84 63.1
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 2.7e-19 98.6 84 63.1
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 1.8e-18 95.9 67 70.1
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 1.2e-17 93.2 67 68.7
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 1.2e-17 93.2 67 68.7
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 2.0e-17 92.4 63 73.0
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 2.0e-17 92.4 63 71.4
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 2.6e-17 92.0 63 73.0
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 3.4e-17 91.7 65 66.2
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 4.4e-17 91.3 67 65.7
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 4.4e-17 91.3 63 69.8
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 5.7e-17 90.9 67 65.7
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 5.7e-17 90.9 65 70.8
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 5.7e-17 90.9 65 66.2
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 1.3e-16 89.7 67 65.7
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 1.3e-16 89.7 63 69.8
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 1.3e-16 89.7 65 67.7
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 1.3e-16 89.7 65 67.7
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 2.2e-16 89.0 65 67.7
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 2.2e-16 89.0 65 66.2
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 2.2e-16 89.0 66 63.6
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 2.8e-16 88.6 63 68.3
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 2.8e-16 88.6 67 64.2
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 3.7e-16 88.2 65 66.2
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 3.7e-16 88.2 65 64.6
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 3.7e-16 88.2 65 66.2
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 4.8e-16 87.8 65 66.2
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 4.8e-16 87.8 67 64.2
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 4.8e-16 87.8 66 66.7
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 4.8e-16 87.8 76 60.5
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 4.8e-16 87.8 65 66.2
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 6.3e-16 87.4 68 61.8
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 6.3e-16 87.4 64 64.1
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 6.3e-16 87.4 64 64.1
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 6.3e-16 87.4 65 67.7
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 6.3e-16 87.4 65 66.2
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 6.3e-16 87.4 65 66.2
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 8.3e-16 87.0 65 63.1
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 8.3e-16 87.0 65 66.2
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 8.3e-16 87.0 67 62.7
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 8.3e-16 87.0 65 61.5
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 8.3e-16 87.0 65 66.2
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 8.3e-16 87.0 65 66.2
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 8.3e-16 87.0 67 64.2
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 8.3e-16 87.0 65 67.7
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 1.1e-15 86.7 65 64.6
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 1.1e-15 86.7 67 62.7
Carub.0007s3141 Capsella rubella HOM05D003989 ORTHO05D004626 1.1e-15 86.7 67 62.7
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 1.1e-15 86.7 67 62.7
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 1.1e-15 86.7 67 62.7
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 1.1e-15 86.7 65 64.6
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 1.1e-15 86.7 65 66.2
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 1.4e-15 86.3 65 64.6
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.4e-15 86.3 65 66.2
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 1.4e-15 86.3 69 60.9
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 1.4e-15 86.3 65 64.6
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 1.4e-15 86.3 67 59.7
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.4e-15 86.3 63 66.7
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 1.8e-15 85.9 67 61.2
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 1.8e-15 85.9 64 67.2
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 2.4e-15 85.5 67 61.2
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 2.4e-15 85.5 68 58.8
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 2.4e-15 85.5 67 64.2
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 2.4e-15 85.5 65 66.2
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 3.1e-15 85.1 67 59.7
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 3.1e-15 85.1 64 65.6
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 3.1e-15 85.1 67 62.7
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 4.1e-15 84.7 67 59.7
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 4.1e-15 84.7 65 63.1
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 4.1e-15 84.7 67 59.7
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 4.1e-15 84.7 67 62.7
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 5.4e-15 84.3 67 59.7
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 5.4e-15 84.3 67 59.7
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 5.4e-15 84.3 65 61.5
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 5.4e-15 84.3 67 59.7
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 5.4e-15 84.3 67 59.7
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 5.4e-15 84.3 65 61.5
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 5.4e-15 84.3 67 59.7
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 5.4e-15 84.3 65 63.1
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 5.4e-15 84.3 67 59.7
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 5.4e-15 84.3 67 59.7
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 5.4e-15 84.3 62 64.5
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 7.0e-15 84.0 64 65.6
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 7.0e-15 84.0 65 64.6
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 9.1e-15 83.6 65 61.5
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 9.1e-15 83.6 65 61.5
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 9.1e-15 83.6 65 61.5
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 9.1e-15 83.6 65 61.5
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 9.1e-15 83.6 65 61.5
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 9.1e-15 83.6 67 62.7
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 9.1e-15 83.6 64 62.5
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 9.1e-15 83.6 61 65.6
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 1.2e-14 83.2 65 60.0
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 1.2e-14 83.2 66 60.6
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 2.0e-14 82.4 67 56.7
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 2.0e-14 82.4 67 59.7
CSS0015513 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 2.0e-14 82.4 62 67.7
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.0e-14 82.4 67 59.7
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 2.0e-14 82.4 64 64.1
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 2.0e-14 82.4 67 61.2
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 2.7e-14 82.0 67 58.2
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 2.7e-14 82.0 67 58.2
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 3.5e-14 81.6 65 64.6
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 4.5e-14 81.3 65 63.1
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 4.5e-14 81.3 62 64.5
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 4.5e-14 81.3 62 62.9
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 4.5e-14 81.3 63 63.5
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 4.5e-14 81.3 65 63.1
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 5.9e-14 80.9 83 48.2
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 5.9e-14 80.9 67 58.2
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 7.7e-14 80.5 65 64.6
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 7.7e-14 80.5 67 58.2
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 1.0e-13 80.1 66 56.1
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 1.0e-13 80.1 62 59.7
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.3e-13 79.7 71 59.2
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 1.7e-13 79.3 65 60.0
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 1.7e-13 79.3 64 62.5
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 2.3e-13 79.0 64 62.5
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 2.3e-13 79.0 70 60.0
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 3.8e-13 78.2 62 59.7
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 5.0e-13 77.8 70 58.6
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 5.0e-13 77.8 67 58.2
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 6.5e-13 77.4 67 58.2
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 1.1e-12 76.6 65 61.5
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 1.1e-12 76.6 76 53.9
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 1.1e-12 76.6 83 53.0
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.5e-12 76.3 67 56.7
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 1.5e-12 76.3 62 54.8
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.9e-12 75.9 70 58.6
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 2.5e-12 75.5 67 56.7
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 5.5e-12 74.3 65 56.9
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 5.5e-12 74.3 64 57.8
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 9.5e-12 73.6 59 55.9
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.6e-11 72.8 65 58.5
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 2.1e-11 72.4 64 57.8
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 3.6e-11 71.6 63 57.1
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 6.1e-11 70.9 65 53.8
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 1.0e-10 70.1 59 59.3
MCO11G084 Micromonas commoda HOM05D003989 ORTHO05D004626 1.0e-10 70.1 66 45.5
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 1.8e-10 69.3 64 48.4
CBR_g23031 Chara braunii HOM05D003989 ORTHO05D004626 2.3e-10 68.9 106 35.8
Pp3c12_14220 Physcomitrium patens HOM05D003989 ORTHO05D004626 5.2e-10 67.8 59 52.5
Pp3c3_23160 Physcomitrium patens HOM05D003989 ORTHO05D004626 4.4e-09 64.7 57 52.6
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 2.8e-08 62.0 45 60.0
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 8.3e-08 60.5 43 62.8
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 3.1e-07 58.5 67 44.8
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 4.1e-07 58.2 67 46.3
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 5.4e-07 57.8 67 44.8
Hund03044 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.2e-06 56.6 53 50.9
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 1.6e-06 56.2 90 40.0
BcaB06g28507 Brassica carinata HOM05D003989 ORTHO05D004626 3.5e-06 55.1 64 46.9
AUR62015564 Chenopodium quinoa HOM05D003989 ORTHO05D004626 7.8e-06 53.9 56 48.2
AUR62015565 Chenopodium quinoa HOM05D003989 ORTHO05D004626 7.8e-06 53.9 59 49.2


User provided reference genes

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