Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g069600 Medicago truncatula HOM05D000773 ORTHO05D000588 2.8e-45 184.9 90 100.0
Medtr8g098655 Medicago truncatula HOM05D000773 ORTHO05D000588 1.8e-20 102.4 60 80.0
Ca_10935_v3 Cicer arietinum L. HOM05D000773 ORTHO05D000588 3.1e-20 101.7 60 80.0
Medtr1g073380 Medicago truncatula HOM05D000773 ORTHO05D000588 2.6e-19 98.6 60 78.3
Medtr8g098605 Medicago truncatula HOM05D000773 ORTHO05D000588 2.6e-19 98.6 58 81.0
Medtr1g073590 Medicago truncatula HOM05D000773 ORTHO05D000588 3.4e-19 98.2 60 76.7
Medtr1g073430 Medicago truncatula HOM05D000773 ORTHO05D000588 2.9e-18 95.1 60 76.7
TPR.G12772 Trifolium pratense HOM05D000773 ORTHO05D000588 4.9e-18 94.4 60 75.0
Medtr1g073530 Medicago truncatula HOM05D000773 ORTHO05D000588 2.4e-17 92.0 60 73.3
Psat7g030800 Pisum sativum HOM05D000773 ORTHO05D000588 1.3e-15 86.3 51 74.5
TPR.G12943 Trifolium pratense HOM05D000773 ORTHO05D000588 2.3e-15 85.5 50 80.0
Lalb_Chr16g0390141 Lupinus albus HOM05D000773 ORTHO05D000588 3.0e-15 85.1 60 66.7
Psat7g031720 Pisum sativum HOM05D000773 ORTHO05D000588 1.9e-14 82.4 59 64.4
Glyma.05G209500 Glycine max HOM05D000773 ORTHO05D000588 2.1e-13 79.0 60 63.3
Phvul.002G291300 Phaseolus vulgaris HOM05D000773 ORTHO05D000588 6.2e-13 77.4 60 60.0
Glyma.08G016200 Glycine max HOM05D000773 ORTHO05D000588 8.1e-13 77.0 60 61.7
Lj4g0017790 Lotus japonicus HOM05D000773 ORTHO05D000588 8.1e-13 77.0 61 59.0
arahy.Tifrunner.gnm1.ann1.XIUN11 Arachis hypogaea HOM05D000773 ORTHO05D000588 4.0e-12 74.7 60 58.3
arahy.Tifrunner.gnm1.ann1.E7132P Arachis hypogaea HOM05D000773 ORTHO05D000588 1.5e-11 72.8 60 60.0
VMungo0251G2594 Vigna mungo HOM05D000773 ORTHO05D000588 7.6e-11 70.5 60 58.3
Sed0009983 Sechium edule HOM05D000773 ORTHO05D000588 2.9e-10 68.6 61 54.1
CsaV3_4G005870 Cucumis sativus L. HOM05D000773 ORTHO05D000588 4.9e-10 67.8 59 55.9
Cpa.g.sc1258.5 Carica papaya HOM05D000773 ORTHO05D000588 8.4e-10 67.0 60 55.0
Gohir.A08G183800 Gossypium hirsutum HOM05D000773 ORTHO05D000588 1.1e-09 66.6 54 59.3
Gohir.D08G197620 Gossypium hirsutum HOM05D000773 ORTHO05D000588 1.1e-09 66.6 54 59.3
Gohir.D08G202300 Gossypium hirsutum HOM05D000773 ORTHO05D000588 1.1e-09 66.6 54 59.3
Gorai.004G213500 Gossypium raimondii HOM05D000773 ORTHO05D000588 1.1e-09 66.6 54 59.3
MELO3C016363.2 Cucumis melo HOM05D000773 ORTHO05D000588 1.4e-09 66.2 59 54.2
Duzib138G1265 Durio zibethinus HOM05D000773 ORTHO05D000588 2.4e-09 65.5 63 55.6
ClCG07G008230 Citrullus lanatus HOM05D000773 ORTHO05D000588 3.2e-09 65.1 59 52.5
Duzib205G0646 Durio zibethinus HOM05D000773 ORTHO05D000588 4.2e-09 64.7 46 65.2
Gohir.A07G141700 Gossypium hirsutum HOM05D000773 ORTHO05D000588 4.2e-09 64.7 57 54.4
Gohir.D07G147200 Gossypium hirsutum HOM05D000773 ORTHO05D000588 4.2e-09 64.7 57 54.4
Gorai.001G168400 Gossypium raimondii HOM05D000773 ORTHO05D000588 4.2e-09 64.7 57 54.4
Thecc.01G357000 Theobroma cacao HOM05D000773 ORTHO05D000588 4.2e-09 64.7 57 56.1
Duzib068G0607 Durio zibethinus HOM05D000773 ORTHO05D000588 9.3e-09 63.5 55 56.4
Medtr6g012370 Medicago truncatula HOM05D000773 ORTHO05D000588 9.3e-09 63.5 43 69.8
Ciclev10019313m.g Citrus clementina HOM05D000773 ORTHO05D000588 1.2e-08 63.2 50 58.0
Thecc.03G281700 Theobroma cacao HOM05D000773 ORTHO05D000588 1.2e-08 63.2 60 50.0
BcaC04g21135 Brassica carinata HOM05D000773 ORTHO05D000588 2.7e-08 62.0 59 50.8
C09p35170 Brassica napus HOM05D000773 ORTHO05D000588 2.7e-08 62.0 59 50.8
BolC9t56363H Brassica oleracea HOM05D000773 ORTHO05D000588 2.7e-08 62.0 59 50.8
Hma1.2p1_1123F.1_g259420 Hydrangea macrophylla HOM05D000773 ORTHO05D000588 2.7e-08 62.0 67 43.3
Manes.01G255100 Manihot esculenta HOM05D000773 ORTHO05D000588 3.5e-08 61.6 57 52.6
Gorai.008G120900 Gossypium raimondii HOM05D000773 ORTHO05D000588 4.6e-08 61.2 56 51.8
SHI13424 Sapria himalayana HOM05D000773 ORTHO05D000588 6.0e-08 60.8 48 56.2
Sabra14G0062900 Salix brachista HOM05D000773 ORTHO05D000588 7.8e-08 60.5 48 58.3
COL.COLO4_34492 Corchorus olitorius HOM05D000773 ORTHO05D000588 1.0e-07 60.1 60 46.7
Duzib268G0149 Durio zibethinus HOM05D000773 ORTHO05D000588 1.3e-07 59.7 64 50.0
AL6G45830 Arabidopsis lyrata HOM05D000773 ORTHO05D000588 1.7e-07 59.3 59 47.5
COL.COLO4_12732 Corchorus olitorius HOM05D000773 ORTHO05D000588 1.7e-07 59.3 57 50.9
DCAR_006936 Daucus carota HOM05D000773 ORTHO05D000588 2.3e-07 58.9 56 46.4
A09p27760 Brassica napus HOM05D000773 ORTHO05D000588 3.0e-07 58.5 59 50.8
BraA09t38346Z Brassica rapa HOM05D000773 ORTHO05D000588 3.0e-07 58.5 59 50.8
Gohir.A12G108400 Gossypium hirsutum HOM05D000773 ORTHO05D000588 3.0e-07 58.5 56 50.0
RhsimUnG0160200 Rhododendron simsii HOM05D000773 ORTHO05D000588 3.0e-07 58.5 55 54.5
Sp6g06060 Schrenkiella parvula HOM05D000773 ORTHO05D000588 3.0e-07 58.5 57 47.4
arahy.Tifrunner.gnm1.ann1.E2H3M1 Arachis hypogaea HOM05D000773 ORTHO05D000588 3.9e-07 58.2 54 50.0
arahy.Tifrunner.gnm1.ann1.H31DAJ Arachis hypogaea HOM05D000773 ORTHO05D000588 3.9e-07 58.2 54 50.0
Lj1g0008294 Lotus japonicus HOM05D000773 ORTHO05D000588 3.9e-07 58.2 54 50.0
Thhalv10028531m.g Eutrema salsugineum HOM05D000773 ORTHO05D000588 6.6e-07 57.4 60 45.0
Potri.014G086700 Populus trichocarpa HOM05D000773 ORTHO05D000588 6.6e-07 57.4 48 54.2
MD14G1108400 Malus domestica HOM05D000773 ORTHO05D000588 8.7e-07 57.0 58 43.1
Nn6g33357 Nelumbo nucifera HOM05D000773 ORTHO05D000588 1.1e-06 56.6 53 49.1
BcaB01g01639 Brassica carinata HOM05D000773 ORTHO05D000588 1.5e-06 56.2 59 47.5
HanXRQChr13g0426641 Helianthus annuus HOM05D000773 ORTHO05D000588 1.5e-06 56.2 53 47.2
SalBow3G0125 Salvia bowleyana HOM05D000773 ORTHO05D000588 1.5e-06 56.2 48 52.1
Actinidia02834 Actinidia chinensis HOM05D000773 ORTHO05D000588 1.9e-06 55.8 53 52.8
AUR62004382 Chenopodium quinoa HOM05D000773 ORTHO05D000588 1.9e-06 55.8 56 46.4
Glyma.07G069150 Glycine max HOM05D000773 ORTHO05D000588 1.9e-06 55.8 52 53.8
Oeu019182.1 Olea europaea HOM05D000773 ORTHO05D000588 2.5e-06 55.5 50 46.0
Rhsim02G0233300 Rhododendron simsii HOM05D000773 ORTHO05D000588 2.5e-06 55.5 55 52.7
VMungo0331G1103 Vigna mungo HOM05D000773 ORTHO05D000588 2.5e-06 55.5 52 48.1
CANSAT56G3208 Cannabis sativa HOM05D000773 ORTHO05D000588 3.3e-06 55.1 48 52.1
Cpa.g.sc214.10 Carica papaya HOM05D000773 ORTHO05D000588 3.3e-06 55.1 63 46.0
Cfa012207 Carpinus fangiana HOM05D000773 ORTHO05D000588 3.3e-06 55.1 57 43.9
Ciclev10019137m.g Citrus clementina HOM05D000773 ORTHO05D000588 3.3e-06 55.1 48 52.1
DCAR_004621 Daucus carota HOM05D000773 ORTHO05D000588 3.3e-06 55.1 59 40.7
AUR62022587 Chenopodium quinoa HOM05D000773 ORTHO05D000588 4.3e-06 54.7 56 46.4
Dinv37623 Davidia involucrata HOM05D000773 ORTHO05D000588 4.3e-06 54.7 62 43.5
Prupe.5G103500 Prunus persica HOM05D000773 ORTHO05D000588 4.3e-06 54.7 57 43.9
TWI32G0558 Tripterygium wilfordii HOM05D000773 ORTHO05D000588 4.3e-06 54.7 47 51.1
Atru.chr5.519 Acer truncatum HOM05D000773 ORTHO05D000588 5.6e-06 54.3 52 48.1
Haze_08806 Corylus avellana HOM05D000773 ORTHO05D000588 5.6e-06 54.3 57 42.1
Dinv43837 Davidia involucrata HOM05D000773 ORTHO05D000588 5.6e-06 54.3 56 46.4
ECA240G3418 Erigeron canadensis HOM05D000773 ORTHO05D000588 5.6e-06 54.3 53 45.3
Peaxi162Scf00074g02029 Petunia axillaris HOM05D000773 ORTHO05D000588 5.6e-06 54.3 58 44.8
CAN.G532.4 Capsicum annuum HOM05D000773 ORTHO05D000588 7.3e-06 53.9 44 54.5
Dinv32496 Davidia involucrata HOM05D000773 ORTHO05D000588 7.3e-06 53.9 48 50.0
Lsat_1_v5_gn_3_137381 Lactuca sativa HOM05D000773 ORTHO05D000588 7.3e-06 53.9 57 43.9
Potri.002G161100 Populus trichocarpa HOM05D000773 ORTHO05D000588 7.3e-06 53.9 72 41.7
Nitab4.5_0001522g0090 Nicotiana tabacum HOM05D000773 ORTHO05D000588 9.6e-06 53.5 58 43.1


User provided reference genes

Program Settings