Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 1.2e-100 369.8 183 100.0
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 3.8e-94 348.2 183 94.0
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 1.2e-92 343.2 184 92.9
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 2.7e-87 325.5 183 90.2
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 3.8e-78 295.0 181 81.8
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 3.8e-78 295.0 181 82.9
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 1.5e-77 293.1 181 80.7
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 6.1e-76 287.7 181 80.1
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 4.4e-74 281.6 181 79.0
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 4.1e-72 275.0 181 77.3
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 1.3e-70 270.0 181 76.2
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 3.9e-70 268.5 181 74.6
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 3.9e-70 268.5 181 74.6
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 6.8e-67 257.7 180 72.8
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 1.3e-65 253.4 181 71.8
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 6.4e-65 251.1 182 70.3
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 4.1e-64 248.4 185 71.4
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 4.1e-64 248.4 183 71.6
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 1.2e-63 246.9 181 70.2
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.6e-63 246.5 183 71.6
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 2.0e-63 246.1 182 70.9
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 2.7e-63 245.7 184 72.8
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 4.6e-63 245.0 183 71.0
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 4.6e-63 245.0 182 72.0
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 1.0e-62 243.8 182 69.8
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 1.3e-62 243.4 182 71.4
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 1.3e-62 243.4 182 71.4
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 2.3e-62 242.7 184 72.8
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 3.9e-62 241.9 182 70.9
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 6.6e-62 241.1 181 70.2
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 8.6e-62 240.7 183 68.9
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 8.6e-62 240.7 182 70.3
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 1.1e-61 240.4 183 69.9
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 2.5e-61 239.2 184 69.6
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 7.3e-61 237.7 183 68.3
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 9.5e-61 237.3 181 66.3
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 9.5e-61 237.3 186 67.7
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 1.2e-60 236.9 182 69.2
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 1.2e-60 236.9 186 67.2
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 2.1e-60 236.1 182 68.1
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 2.8e-60 235.7 182 68.7
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 8.1e-60 234.2 184 67.4
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 1.1e-59 233.8 181 64.6
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 1.4e-59 233.4 183 66.7
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 1.8e-59 233.0 183 66.7
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 1.8e-59 233.0 182 68.1
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 2.3e-59 232.6 185 66.5
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 3.1e-59 232.3 183 68.9
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 6.8e-59 231.1 182 67.0
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 1.2e-58 230.3 183 67.2
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.5e-58 229.9 183 67.8
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 2.0e-58 229.6 167 73.1
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 4.4e-58 228.4 183 67.2
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 4.4e-58 228.4 183 67.2
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 4.4e-58 228.4 146 78.8
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 2.9e-57 225.7 186 65.1
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 3.7e-57 225.3 183 62.8
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 6.4e-57 224.6 185 64.9
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 1.1e-56 223.8 184 65.8
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 1.4e-56 223.4 147 76.9
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 1.4e-56 223.4 184 63.6
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 1.4e-56 223.4 182 63.2
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.9e-56 223.0 182 65.4
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 1.9e-56 223.0 145 78.6
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 1.9e-56 223.0 181 64.1
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 3.2e-56 222.2 185 61.6
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 5.4e-56 221.5 148 73.6
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 7.1e-56 221.1 182 64.8
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 9.2e-56 220.7 166 66.3
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 9.2e-56 220.7 185 60.5
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 1.2e-55 220.3 189 61.9
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 1.6e-55 219.9 180 64.4
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 2.7e-55 219.2 185 63.8
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 6.0e-55 218.0 185 63.8
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 7.8e-55 217.6 114 90.4
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 1.3e-54 216.9 165 63.6
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.7e-54 216.5 182 63.7
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 1.7e-54 216.5 166 63.3
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.3e-54 216.1 182 62.6
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 2.3e-54 216.1 174 64.9
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 2.3e-54 216.1 114 89.5
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 3.0e-54 215.7 169 64.5
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 3.9e-54 215.3 144 69.4
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 5.1e-54 214.9 144 74.3
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 6.6e-54 214.5 169 63.9
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 8.6e-54 214.2 182 62.1
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 8.6e-54 214.2 181 61.3
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 1.5e-53 213.4 144 69.4
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 1.5e-53 213.4 116 87.1
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 1.5e-53 213.4 182 63.2
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 1.9e-53 213.0 185 58.4
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 4.3e-53 211.8 165 62.4
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 5.6e-53 211.5 159 66.0
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 2.1e-52 209.5 157 66.2
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 2.8e-52 209.1 145 69.0
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 4.7e-52 208.4 167 60.5
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 1.1e-51 207.2 172 59.9
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 1.8e-51 206.5 181 61.9
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 2.4e-51 206.1 183 60.7
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 3.1e-51 205.7 179 59.2
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 3.1e-51 205.7 126 77.8
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 4.0e-51 205.3 114 85.1
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 1.5e-50 203.4 111 83.8
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 2.0e-50 203.0 144 68.8
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 3.4e-50 202.2 182 59.9
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 7.6e-50 201.1 184 56.5
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 2.9e-49 199.1 184 56.5
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 2.9e-49 199.1 181 58.6
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 4.9e-49 198.4 171 63.2
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 8.4e-49 197.6 182 58.2
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 1.7e-46 189.9 111 79.3
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 6.9e-43 177.9 118 68.6
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 9.0e-43 177.6 183 56.8
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.4e-40 170.2 117 66.7
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 3.2e-40 169.1 111 70.3
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 6.0e-39 164.9 108 68.5
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 6.6e-38 161.4 117 62.4
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 2.4e-35 152.9 111 68.5
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 6.9e-35 151.4 108 60.2
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 6.9e-35 151.4 112 58.9
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 2.2e-33 146.4 106 59.4
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 1.4e-32 143.7 108 58.3
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 4.6e-23 112.1 57 87.7
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 4.6e-23 112.1 57 87.7
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 9.0e-19 97.8 175 41.1
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 2.5e-16 89.7 106 53.8
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 9.3e-16 87.8 58 74.1
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 8.7e-14 81.3 50 76.0
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 2.6e-10 69.7 111 45.0


User provided reference genes

Program Settings