Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 6.0e-67 257.3 123 100.0
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 1.5e-65 252.7 123 96.7
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 1.8e-63 245.7 123 95.9
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 2.9e-61 238.4 123 91.1
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 7.8e-59 230.3 123 87.8
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.9e-57 225.7 122 86.9
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 7.3e-57 223.8 123 87.0
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 9.6e-57 223.4 123 85.4
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.6e-56 222.6 123 85.4
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 5.2e-55 217.6 123 81.3
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 9.0e-55 216.9 121 82.6
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 9.0e-55 216.9 123 81.3
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 9.0e-55 216.9 123 82.9
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.5e-54 216.1 123 81.3
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 1.5e-54 216.1 122 82.0
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 1.5e-54 216.1 123 80.5
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 2.6e-54 215.3 123 81.3
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 5.8e-54 214.2 123 80.5
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 7.6e-54 213.8 123 81.3
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 9.9e-54 213.4 121 81.8
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 9.9e-54 213.4 123 80.5
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 1.3e-53 213.0 123 82.9
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 79.7
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 80.5
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.7e-53 212.6 122 80.3
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 80.5
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 1.7e-53 212.6 122 81.1
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 2.2e-53 212.2 123 81.3
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 2.9e-53 211.8 123 78.9
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 2.9e-53 211.8 123 81.3
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 2.9e-53 211.8 123 82.9
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 3.8e-53 211.5 123 79.7
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 4.9e-53 211.1 126 80.2
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 6.4e-53 210.7 123 79.7
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 8.4e-53 210.3 123 80.5
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 1.1e-52 209.9 123 78.9
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.1e-52 209.9 121 80.2
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 1.1e-52 209.9 123 78.9
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 1.1e-52 209.9 122 81.1
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 1.1e-52 209.9 122 81.1
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 3.2e-52 208.4 123 77.2
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 3.2e-52 208.4 123 80.5
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 3.2e-52 208.4 123 79.7
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 4.2e-52 208.0 123 77.2
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 5.4e-52 207.6 122 81.1
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 9.3e-52 206.8 123 78.9
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 1.2e-51 206.5 121 78.5
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 78.0
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 78.0
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 78.0
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 78.0
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.6e-51 206.1 123 78.9
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 2.1e-51 205.7 123 76.4
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 2.1e-51 205.7 123 78.0
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 3.5e-51 204.9 122 78.7
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 4.6e-51 204.5 122 79.5
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 6.0e-51 204.1 120 77.5
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.8e-51 203.8 123 77.2
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.3e-50 203.0 123 75.6
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 1.3e-50 203.0 121 77.7
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 2.3e-50 202.2 122 78.7
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 3.0e-50 201.8 123 75.6
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 3.9e-50 201.4 123 74.0
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 3.9e-50 201.4 122 75.4
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 6.6e-50 200.7 123 75.6
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 6.6e-50 200.7 123 74.0
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.1e-49 199.9 120 76.7
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 1.1e-49 199.9 123 77.2
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 1.5e-49 199.5 123 73.2
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 1.9e-49 199.1 122 77.0
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 1.9e-49 199.1 115 78.3
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 1.9e-49 199.1 123 75.6
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 2.5e-49 198.7 120 75.8
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 2.5e-49 198.7 122 75.4
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 3.3e-49 198.4 123 74.8
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 5.6e-49 197.6 123 74.0
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 7.3e-49 197.2 115 78.3
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.6e-48 194.9 106 84.9
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 3.6e-48 194.9 123 74.0
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 4.8e-48 194.5 131 71.8
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 6.2e-48 194.1 122 73.0
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.1e-47 193.4 105 84.8
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 2.4e-47 192.2 122 74.6
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 3.1e-47 191.8 136 67.6
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 3.1e-47 191.8 122 74.6
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 3.1e-47 191.8 122 74.6
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 4.0e-47 191.4 106 83.0
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 9.0e-47 190.3 106 83.0
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 9.0e-47 190.3 106 83.0
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 9.0e-47 190.3 122 73.8
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 1.2e-46 189.9 104 84.6
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 1.5e-46 189.5 133 68.4
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 1.5e-46 189.5 113 77.9
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 1.5e-46 189.5 121 73.6
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 1.5e-46 189.5 120 72.5
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 3.4e-46 188.3 122 72.1
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 3.4e-46 188.3 120 71.7
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 1.3e-45 186.4 123 69.9
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.2e-45 185.7 118 72.0
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 3.8e-45 184.9 118 72.9
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 6.4e-45 184.1 105 81.0
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 1.9e-44 182.6 131 67.2
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 9.3e-44 180.3 109 74.3
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 9.3e-44 180.3 105 81.0
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 3.5e-43 178.3 104 77.9
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 7.9e-43 177.2 106 78.3
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.3e-42 175.6 106 76.4
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 3.0e-42 175.3 106 75.5
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 3.9e-42 174.9 106 77.4
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 1.1e-41 173.3 116 68.1
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 5.6e-41 171.0 121 66.1
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 9.6e-41 170.2 106 72.6
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 9.6e-41 170.2 107 72.9
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 2.8e-40 168.7 86 87.2
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 6.2e-40 167.5 106 71.7
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.1e-39 166.8 98 75.5
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 1.1e-39 166.8 104 73.1
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 5.3e-39 164.5 104 73.1
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 4.5e-38 161.4 120 68.3
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 3.2e-36 155.2 106 67.9
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 3.2e-36 155.2 106 67.9
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 3.2e-36 155.2 106 67.9
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 7.4e-33 144.1 107 65.4
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 2.6e-30 135.6 88 71.6
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 2.2e-29 132.5 111 51.4
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 4.2e-28 128.3 123 52.8
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.6e-27 126.3 95 63.2
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.6e-27 126.3 109 54.1
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 1.8e-23 112.8 65 76.9
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.1e-17 93.6 68 63.2
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 1.3e-16 90.1 69 59.4
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 3.7e-16 88.6 57 71.9
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 9.1e-15 84.0 65 56.9
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 2.2e-13 79.3 50 66.0
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 2.1e-11 72.8 44 63.6
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 6.7e-10 67.8 50 64.0


User provided reference genes

Program Settings