Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g069195 Medicago truncatula HOM05D014010 ORTHO05D010367 0.0e+00 1675.2 819 100.0
TPR.G25869 Trifolium pratense HOM05D014010 ORTHO05D010367 0.0e+00 1223.0 829 75.9
Psat6g065120 Pisum sativum HOM05D014010 ORTHO05D010367 4.2e-265 918.3 857 60.8
Ca_09627_v3 Cicer arietinum L. HOM05D014010 ORTHO05D010367 6.0e-256 887.9 836 59.8
Lj5g0020428 Lotus japonicus HOM05D014010 ORTHO05D010367 4.0e-191 672.5 829 49.6
Glyma.13G129600 Glycine max HOM05D014010 ORTHO05D010367 5.6e-177 625.5 760 48.6
Phvul.007G155700 Phaseolus vulgaris HOM05D014010 ORTHO05D010367 1.6e-144 517.7 718 45.4
arahy.Tifrunner.gnm1.ann1.201IN6 Arachis hypogaea HOM05D014010 ORTHO05D010367 3.8e-141 506.5 824 42.7
VMungo0720G0709 Vigna mungo HOM05D014010 ORTHO05D010367 1.4e-135 488.0 793 40.9
Lalb_Chr02g0152931 Lupinus albus HOM05D014010 ORTHO05D010367 6.9e-127 459.1 650 46.9
arahy.Tifrunner.gnm1.ann1.S5Q210 Arachis hypogaea HOM05D014010 ORTHO05D010367 1.0e-101 375.6 617 41.0
Gohir.D07G208750 Gossypium hirsutum HOM05D009210 ORTHO05D010367 1.1e-26 126.3 692 26.0
Cfa002512 Carpinus fangiana HOM05D009210 ORTHO05D010367 1.5e-25 122.5 653 25.1
Manes.13G042500 Manihot esculenta HOM05D009210 ORTHO05D010367 1.6e-22 112.5 247 37.7
Gohir.A07G202550 Gossypium hirsutum HOM05D009210 ORTHO05D010367 1.9e-20 105.5 380 30.0
Gorai.001G235700 Gossypium raimondii HOM05D009210 ORTHO05D010367 1.8e-18 99.0 390 28.7
QL09p043802 Quercus lobata HOM05D009210 ORTHO05D010367 1.2e-17 96.3 229 33.6
QL07p009176 Quercus lobata HOM05D009210 ORTHO05D010367 1.5e-17 95.9 229 31.9
QL09p043508 Quercus lobata HOM05D009210 ORTHO05D010367 1.5e-17 95.9 229 31.9
Actinidia30107 Actinidia chinensis HOM05D009210 ORTHO05D010367 2.0e-17 95.5 258 32.2
FvH4_2g19950 Fragaria vesca HOM05D016859 ORTHO05D010367 3.4e-17 94.7 293 31.1
Prupe.8G209900 Prunus persica HOM05D016859 ORTHO05D010367 5.8e-17 94.0 210 34.3
QL09p043653 Quercus lobata HOM05D009210 ORTHO05D010367 9.9e-17 93.2 235 32.3
Duzib211G0683 Durio zibethinus HOM05D009210 ORTHO05D010367 2.2e-16 92.0 331 31.1
FAN24G1655 Fragaria x ananassa HOM05D016859 ORTHO05D010367 2.9e-16 91.7 293 30.7
TWI59G1397 Tripterygium wilfordii HOM05D009210 ORTHO05D010367 1.1e-15 89.7 492 26.2
CANSAT01G1047 Cannabis sativa HOM05D009210 ORTHO05D010367 2.4e-15 88.6 254 32.3
Lj1A79G19 Lonicera japonica HOM05D009210 ORTHO05D010367 9.3e-15 86.7 274 31.4
FAN27G2643 Fragaria x ananassa HOM05D016859 ORTHO05D010367 7.9e-14 83.6 316 27.5
FAN15G1208 Fragaria x ananassa HOM05D016859 ORTHO05D010367 1.3e-13 82.8 314 28.3
Ciclev10019870m.g Citrus clementina HOM05D009210 ORTHO05D010367 2.3e-13 82.0 220 33.2
Atru.chr5.1921 Acer truncatum HOM05D009210 ORTHO05D010367 3.9e-13 81.3 158 38.6
Hund18342 Selenicereus undatus HOM05D017699 ORTHO05D019543 5.1e-13 80.9 349 27.2
ClCG09G009440 Citrullus lanatus HOM05D026148 ORTHO05D010367 6.7e-13 80.5 401 29.4
RcHm_v2.0_Chr6g0285611 Rosa chinensis HOM05D016859 ORTHO05D010367 8.7e-13 80.1 284 31.3
CsaV3_7G025420 Cucumis sativus L. HOM05D026148 ORTHO05D010367 4.3e-12 77.8 175 36.0
MELO3C024146.2 Cucumis melo HOM05D026148 ORTHO05D010367 4.8e-11 74.3 192 34.9
Thecc.01G245200 Theobroma cacao HOM05D009210 ORTHO05D010367 8.1e-11 73.6 251 27.9
Cpa.g.sc8.212 Carica papaya HOM05D009210 ORTHO05D010367 1.4e-10 72.8 213 29.6
SGA_v2.0_scaffold3G01596 Striga asiatica HOM05D009210 ORTHO05D015998 3.1e-10 71.6 187 33.7
Oeu052100.2 Olea europaea HOM05D013334 ORTHO05D015998 1.2e-09 69.7 212 33.0
COL.COLO4_08165 Corchorus olitorius HOM05D009210 ORTHO05D010367 5.8e-09 67.4 272 25.7
CiPaw.04G192300 Carya illinoinensis HOM05D009210 ORTHO05D010367 1.3e-08 66.2 150 34.0
THA.LOC104814711 Tarenaya hassleriana HOM05D012015 ORTHO05D014750 1.3e-08 66.2 286 29.4
Nn3g19852 Nelumbo nucifera HOM05D009210 ORTHO05D010367 1.7e-08 65.9 284 26.8
DCAR_000542 Daucus carota HOM05D009210 ORTHO05D010367 2.5e-07 62.0 352 25.0
Ah.08g213820 Amaranthus hybridus HOM05D017699 ORTHO05D019543 3.2e-07 61.6 279 28.3
CARHR110740 Cardamine hirsuta HOM05D012015 ORTHO05D014750 4.2e-07 61.2 285 29.5
Sed0006753 Sechium edule HOM05D026148 ORTHO05D010367 9.3e-07 60.1 191 30.4
HanXRQChr13g0408971 Helianthus annuus HOM05D040207 ORTHO05D010367 2.1e-06 58.9 356 23.6
Sp3g33480 Schrenkiella parvula HOM05D012015 ORTHO05D014750 2.7e-06 58.5 281 29.9
Nitab4.5_0002330g0020 Nicotiana tabacum HOM05D013334 ORTHO05D015998 7.9e-06 57.0 165 36.4


User provided reference genes

Program Settings