Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 8.8e-260 899.8 471 100.0
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 2.8e-242 841.6 471 93.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.9e-239 831.6 471 91.7
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.2e-224 783.1 471 87.9
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 7.8e-224 780.4 473 87.9
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 4.3e-222 774.6 471 86.6
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 4.7e-221 771.2 471 87.0
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.8e-220 769.2 473 85.8
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.6e-213 746.1 471 83.0
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 2.2e-210 735.7 441 87.5
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.4e-204 716.5 423 91.0
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 3.2e-201 705.3 472 79.2
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.2e-200 703.4 471 78.1
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 2.5e-198 695.7 474 77.6
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 4.3e-198 694.9 443 82.8
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 7.3e-198 694.1 472 77.5
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 7.3e-198 694.1 471 78.1
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 6.2e-197 691.0 473 78.2
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 8.1e-197 690.6 471 77.1
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 5.2e-196 688.0 441 81.9
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 9.0e-196 687.2 443 82.2
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.5e-195 686.4 441 81.0
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 2.0e-195 686.0 471 77.1
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 9.9e-195 683.7 441 81.2
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 9.9e-195 683.7 441 79.4
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.9e-194 682.2 482 75.7
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.9e-193 679.5 473 76.5
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 7.1e-193 677.6 471 76.9
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.1e-193 677.6 448 79.2
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.6e-192 676.4 474 76.2
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 2.1e-192 676.0 473 75.7
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 3.5e-192 675.2 468 77.8
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 7.8e-192 674.1 473 74.8
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.7e-191 672.9 466 76.0
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 2.3e-191 672.5 441 78.7
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 8.7e-191 670.6 474 76.4
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.9e-190 669.5 445 78.4
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.3e-189 666.8 473 74.6
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.1e-189 666.0 472 75.2
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 4.8e-189 664.8 454 78.0
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 8.1e-189 664.1 473 74.4
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 8.1e-189 664.1 449 77.5
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.1e-188 663.7 475 76.0
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.4e-188 663.3 467 75.4
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.8e-188 662.9 471 74.9
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.8e-188 662.9 441 78.7
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 2.4e-188 662.5 467 75.6
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 6.9e-188 661.0 440 77.7
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 2.0e-187 659.4 472 75.4
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 2.0e-187 659.4 451 75.8
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 2.6e-187 659.1 472 75.4
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 4.5e-187 658.3 473 74.2
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 7.6e-187 657.5 420 82.9
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 2.9e-186 655.6 472 74.2
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 2.9e-186 655.6 434 78.8
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.9e-185 652.9 509 71.7
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.2e-185 652.1 474 74.1
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.2e-185 651.7 474 73.4
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 9.3e-185 650.6 470 74.7
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.2e-184 650.2 474 73.4
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.2e-184 650.2 474 73.4
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.6e-184 649.8 432 78.0
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 2.1e-184 649.4 448 75.2
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.7e-184 649.0 474 73.4
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 6.0e-184 647.9 475 73.5
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.3e-183 646.7 475 73.5
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 3.9e-183 645.2 475 73.1
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 5.1e-183 644.8 468 73.7
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.1e-182 643.7 473 73.8
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.5e-182 643.3 475 72.6
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 2.5e-182 642.5 446 75.1
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 5.6e-182 641.3 468 73.5
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.3e-181 640.2 441 75.3
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 1.6e-181 639.8 441 75.5
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.6e-181 639.8 468 73.5
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 6.2e-181 637.9 475 72.4
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.1e-180 637.1 441 75.7
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.4e-180 636.7 454 74.7
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.8e-180 636.3 474 72.6
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 4.0e-180 635.2 443 75.4
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 9.0e-180 634.0 473 72.5
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 2.0e-179 632.9 475 72.4
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.6e-179 632.5 423 76.8
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 5.8e-179 631.3 475 72.0
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.1e-177 627.1 456 74.1
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 2.4e-177 625.9 494 69.6
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 2.4e-177 625.9 449 74.4
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 9.3e-177 624.0 478 70.3
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.7e-176 622.5 399 82.2
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 7.9e-176 620.9 409 79.5
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 7.4e-174 614.4 461 69.6
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.4e-172 610.1 438 74.2
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 9.0e-172 607.4 406 78.6
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 2.0e-171 606.3 546 63.9
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 4.5e-171 605.1 483 68.9
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 4.9e-170 601.7 427 73.1
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 2.1e-168 596.3 422 72.3
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.3e-165 587.0 411 76.9
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.0e-162 577.4 412 75.5
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 2.2e-162 576.2 424 70.5
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 5.3e-156 555.1 409 72.4
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 9.1e-156 554.3 424 69.1
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 3.8e-154 548.9 423 68.8
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.3e-151 539.7 393 75.1
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 2.8e-149 532.7 385 70.4
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 3.0e-143 512.7 326 83.7
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.1e-137 494.2 347 78.7
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.6e-134 483.0 481 59.9
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.7e-133 480.3 437 59.7
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 5.5e-129 465.3 360 68.9
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 5.7e-126 455.3 432 61.1
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.4e-124 450.7 437 58.8
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 4.2e-121 439.1 329 68.4
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 1.5e-118 430.6 434 56.2
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 8.6e-106 388.3 253 81.4
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 3.4e-102 376.3 388 56.7
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.6e-80 304.3 242 69.4
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.4e-79 300.4 224 72.8
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.9e-77 293.5 195 77.9
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.4e-76 290.4 202 76.2
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.6e-70 270.4 204 70.6
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 7.6e-70 268.9 147 91.2
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 2.1e-67 260.8 218 61.9
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.2e-61 240.7 182 74.7
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.5e-49 200.7 465 35.1
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.1e-47 195.3 124 76.6
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.6e-35 154.8 137 65.7
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.6e-35 154.8 137 65.7
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 3.1e-31 140.6 102 71.6
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 7.0e-31 139.4 141 57.4
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 4.5e-30 136.7 263 39.2
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 3.8e-29 133.7 158 55.7
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 1.5e-28 131.7 101 70.3
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 2.7e-27 127.5 263 37.3
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.0e-26 124.0 147 51.0
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 9.7e-25 119.0 108 61.1
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 4.0e-18 97.1 87 58.6
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 1.5e-17 95.1 120 52.5
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.7e-13 81.6 46 76.1
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.7e-13 81.6 46 76.1
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 5.0e-13 80.1 64 65.6
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.1e-12 79.0 74 54.1
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.5e-12 78.6 74 54.1
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.9e-12 78.2 76 56.6
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 2.5e-12 77.8 73 60.3
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 7.2e-12 76.3 89 51.7
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 1.6e-11 75.1 59 55.9
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 3.6e-11 73.9 130 43.1
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.0e-10 72.4 130 42.3
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.0e-10 72.4 130 42.3
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.0e-10 72.4 130 42.3
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.4e-10 72.0 130 42.3
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 1.8e-10 71.6 136 39.7
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 1.8e-10 71.6 130 41.5
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 1.8e-10 71.6 130 42.3
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.8e-10 71.6 166 34.3
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 2.3e-10 71.2 80 52.5
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-10 71.2 103 45.6
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 4.0e-10 70.5 63 60.3
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 6.8e-10 69.7 64 59.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.2e-09 68.9 178 30.9
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 2.0e-09 68.2 76 51.3
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.2e-08 64.7 132 40.9
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 1.8e-07 61.6 72 50.0
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 3.1e-07 60.8 45 68.9
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.1e-07 60.5 48 68.8
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 4.5e-06 57.0 39 69.2


User provided reference genes

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