Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 3.5e-133 478.4 258 100.0
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 8.9e-89 330.9 263 67.3
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 3.9e-84 315.5 265 71.3
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 7.6e-80 301.2 259 70.3
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 2.3e-52 209.9 250 54.0
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 8.2e-50 201.4 258 52.3
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 2.0e-48 196.8 265 51.7
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 6.7e-44 181.8 233 50.6
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 4.1e-41 172.6 262 45.0
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 1.5e-40 170.6 257 44.0
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 3.4e-40 169.5 258 45.0
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.4e-38 164.1 259 50.6
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 4.6e-37 159.1 260 50.0
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 5.7e-35 152.1 259 47.1
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.7e-34 150.6 256 45.3
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 1.7e-34 150.6 255 45.5
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 5.3e-33 145.6 258 44.6
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 9.1e-33 144.8 269 43.5
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 2.6e-32 143.3 258 45.0
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 2.2e-31 140.2 249 47.4
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 2.2e-26 123.6 234 47.4
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 1.8e-25 120.6 165 45.5
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 2.5e-22 110.2 228 44.7
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 7.2e-22 108.6 160 43.1
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 1.0e-20 104.8 218 35.8
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 5.2e-20 102.4 228 43.0
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 8.8e-20 101.7 226 42.0
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 8.8e-20 101.7 217 35.0
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 8.8e-20 101.7 160 42.5
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 2.6e-19 100.1 242 40.1
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 4.8e-18 95.9 154 41.6
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 1.1e-17 94.7 240 35.8
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 7.0e-17 92.0 249 41.0
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 7.0e-17 92.0 154 40.3
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 2.0e-16 90.5 148 41.9
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 2.0e-16 90.5 106 50.9
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 1.0e-15 88.2 235 40.9
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 1.7e-15 87.4 257 35.0
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 2.2e-15 87.0 237 40.1
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 2.2e-15 87.0 237 34.6
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.1e-14 84.7 241 33.2
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 1.5e-14 84.3 171 32.7
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 3.2e-14 83.2 166 33.7
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 3.2e-14 83.2 157 39.5
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 2.1e-13 80.5 166 33.7
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 2.1e-13 80.5 223 35.4
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 3.6e-13 79.7 202 43.6
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 4.7e-13 79.3 263 29.3
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 6.1e-13 79.0 155 34.8
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 8.0e-13 78.6 164 43.3
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 1.8e-12 77.4 117 44.4
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 2.3e-12 77.0 145 43.4
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 3.0e-12 76.6 182 37.4
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 8.8e-12 75.1 173 35.8
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 1.2e-11 74.7 160 37.5
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 1.5e-11 74.3 135 36.3
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 2.0e-11 73.9 182 35.2
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 2.6e-11 73.6 191 34.6
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 2.6e-11 73.6 143 37.1
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 3.4e-11 73.2 169 37.3
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 5.7e-11 72.4 134 36.6
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 9.8e-11 71.6 185 42.7
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 9.8e-11 71.6 148 37.8
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 9.8e-11 71.6 173 34.7
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 9.8e-11 71.6 134 35.8
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 1.7e-10 70.9 82 48.8
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 2.2e-10 70.5 145 37.9
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 2.8e-10 70.1 136 37.5
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 3.7e-10 69.7 254 30.7
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 3.7e-10 69.7 143 35.0
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 3.7e-10 69.7 187 37.4
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 8.3e-10 68.6 184 37.5
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 8.3e-10 68.6 201 32.3
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 8.3e-10 68.6 188 37.2
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 8.3e-10 68.6 52 65.4
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 8.3e-10 68.6 52 65.4
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 8.3e-10 68.6 98 49.0
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.1e-09 68.2 149 47.7
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 1.1e-09 68.2 246 33.3
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.1e-09 68.2 101 44.6
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 1.4e-09 67.8 208 32.7
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 1.4e-09 67.8 147 38.1
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 1.8e-09 67.4 192 37.5
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 2.4e-09 67.0 139 36.7
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.4e-09 67.0 177 42.4
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.4e-09 67.0 177 42.4
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 2.4e-09 67.0 153 35.3
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 2.4e-09 67.0 136 36.8
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 3.1e-09 66.6 81 49.4
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.1e-09 66.6 92 46.7
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 4.1e-09 66.2 146 36.3
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 5.4e-09 65.9 51 62.7
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 7.0e-09 65.5 234 31.6
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 7.0e-09 65.5 150 34.7
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 9.1e-09 65.1 205 32.7
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 1.2e-08 64.7 125 37.6
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 1.2e-08 64.7 202 39.6
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 1.6e-08 64.3 79 46.8
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 1.6e-08 64.3 81 48.1
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 1.6e-08 64.3 81 48.1
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 2.0e-08 63.9 139 33.8
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 2.0e-08 63.9 204 30.4
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 2.0e-08 63.9 144 36.8
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 2.7e-08 63.5 143 36.4
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 2.7e-08 63.5 208 33.2
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 2.7e-08 63.5 130 52.3
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 3.5e-08 63.2 155 33.5
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 4.5e-08 62.8 119 40.3
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 4.5e-08 62.8 77 48.1
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 4.5e-08 62.8 175 32.0
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 4.5e-08 62.8 91 44.0
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 4.5e-08 62.8 151 37.1
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 4.5e-08 62.8 77 49.4
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 5.9e-08 62.4 99 45.5
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 5.9e-08 62.4 95 36.8
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 7.7e-08 62.0 102 40.2
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 7.7e-08 62.0 89 46.1
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 7.7e-08 62.0 165 31.5
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 7.7e-08 62.0 153 34.0
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 7.7e-08 62.0 221 28.5
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 1.0e-07 61.6 65 53.8
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 1.3e-07 61.2 89 48.3
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 1.3e-07 61.2 146 32.9
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.3e-07 61.2 88 46.6
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.7e-07 60.8 132 34.8
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 2.2e-07 60.5 77 49.4
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 2.2e-07 60.5 202 40.6
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 2.9e-07 60.1 77 48.1
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 2.9e-07 60.1 77 48.1
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 2.9e-07 60.1 143 32.9
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 3.8e-07 59.7 78 50.0
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 3.8e-07 59.7 77 48.1
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.8e-07 59.7 88 42.0
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 6.5e-07 58.9 86 41.9
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 8.5e-07 58.5 76 44.7
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 8.5e-07 58.5 191 30.4
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.5e-06 57.8 60 55.0
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 1.5e-06 57.8 160 34.4
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 1.5e-06 57.8 167 31.1
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.9e-06 57.4 157 32.5
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.9e-06 57.4 60 55.0
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.9e-06 57.4 60 55.0
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.5e-06 57.0 150 34.0
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 2.5e-06 57.0 226 26.5
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 2.5e-06 57.0 114 37.7
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 2.5e-06 57.0 89 62.9
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 3.2e-06 56.6 78 46.2
A05p08470 Brassica napus HOM05D008508 ORTHO05D003325 4.2e-06 56.2 77 45.5
THA.LOC104806576 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 4.2e-06 56.2 151 33.8
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 5.5e-06 55.8 85 41.2
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 5.5e-06 55.8 56 51.8
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 5.5e-06 55.8 54 59.3
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 5.5e-06 55.8 46 60.9
Lsat_1_v5_gn_6_32400 Lactuca sativa HOM05D004206 ORTHO05D003325 7.2e-06 55.5 82 50.0
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 7.2e-06 55.5 153 33.3
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 9.4e-06 55.1 146 32.9
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 9.4e-06 55.1 79 46.8
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 9.4e-06 55.1 110 40.0
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 9.4e-06 55.1 110 40.0
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 9.4e-06 55.1 110 40.0
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 9.4e-06 55.1 43 62.8
Lsat_1_v5_gn_2_110560 Lactuca sativa HOM05D000437 ORTHO05D003325 9.4e-06 55.1 53 54.7


User provided reference genes

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