Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 2.5e-121 438.7 215 100.0
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 6.3e-88 327.8 194 82.0
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 9.1e-87 323.9 210 75.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 7.2e-84 314.3 194 78.4
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.5e-81 306.6 218 67.9
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 3.5e-78 295.4 213 66.2
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.9e-77 292.4 214 66.8
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 5.0e-77 291.6 217 65.9
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.2e-75 287.0 213 65.7
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.4e-71 273.5 244 56.6
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 2.2e-69 266.2 226 56.2
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 5.0e-69 265.0 224 57.6
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 6.5e-69 264.6 218 55.5
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 4.2e-68 261.9 224 55.4
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.6e-67 260.0 220 55.0
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 3.6e-67 258.8 220 53.6
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 4.7e-67 258.5 222 54.1
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.0e-66 257.3 219 53.9
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 6.8e-66 254.6 219 53.0
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 4.4e-65 251.9 261 51.0
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 5.7e-65 251.5 221 54.8
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.3e-64 250.4 215 55.8
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 2.8e-64 249.2 221 53.4
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 9.2e-63 244.2 210 54.8
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 9.2e-63 244.2 209 54.5
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 3.8e-61 238.8 212 52.8
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.5e-60 236.9 215 51.2
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.9e-60 236.5 229 48.5
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 2.5e-60 236.1 187 56.1
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 3.3e-60 235.7 221 48.9
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 2.1e-59 233.0 222 50.5
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 2.8e-59 232.6 210 51.4
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 3.6e-59 232.3 210 52.9
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 3.6e-59 232.3 218 50.5
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.5e-57 226.9 207 50.7
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 2.0e-57 226.5 209 49.8
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.6e-57 226.1 208 52.4
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 7.5e-57 224.6 199 51.3
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 9.8e-57 224.2 211 49.8
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.3e-56 223.8 210 48.1
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.7e-56 223.4 217 48.8
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.7e-56 223.4 220 50.5
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 4.9e-56 221.9 213 49.3
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 4.9e-56 221.9 207 53.1
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 6.4e-56 221.5 218 51.4
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 6.4e-56 221.5 210 52.4
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 8.3e-56 221.1 212 50.0
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 8.3e-56 221.1 188 53.2
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.3e-56 221.1 194 52.1
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.8e-55 219.9 188 53.2
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.8e-55 219.9 212 47.2
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.1e-55 218.8 189 54.0
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 5.4e-55 218.4 191 49.7
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 7.0e-55 218.0 201 50.7
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 9.2e-55 217.6 223 48.9
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 9.2e-55 217.6 254 42.9
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.2e-54 217.2 208 50.0
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.6e-54 216.9 198 50.5
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.6e-54 216.9 215 49.8
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.6e-54 216.9 204 48.5
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.0e-54 216.5 212 49.5
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 2.0e-54 216.5 230 49.6
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.7e-54 216.1 203 49.8
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 4.6e-54 215.3 211 49.8
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 7.8e-54 214.5 216 47.7
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.0e-53 214.2 211 50.2
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.7e-53 213.4 205 48.8
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.0e-53 212.6 211 46.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.0e-53 212.6 209 49.8
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.0e-53 211.8 204 48.0
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 5.0e-53 211.8 195 49.7
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 6.6e-53 211.5 214 47.2
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 8.6e-53 211.1 205 49.3
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.5e-52 210.3 204 46.1
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.5e-52 209.5 205 48.8
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 2.5e-52 209.5 223 48.0
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 4.3e-52 208.8 219 46.1
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.6e-52 208.4 221 47.5
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.6e-52 208.4 196 50.5
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 7.3e-52 208.0 221 46.2
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 2.1e-51 206.5 215 47.9
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.8e-51 206.1 208 48.1
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 3.6e-51 205.7 221 46.6
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 4.7e-51 205.3 209 48.3
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 4.7e-51 205.3 215 44.7
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 6.2e-51 204.9 204 44.6
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.0e-50 204.1 204 48.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.0e-50 204.1 198 49.5
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.4e-50 203.8 221 48.0
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.8e-50 203.4 205 48.8
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 3.1e-50 202.6 222 44.6
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 4.0e-50 202.2 218 47.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 4.0e-50 202.2 212 45.8
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.0e-50 202.2 210 44.8
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 5.2e-50 201.8 209 45.9
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 8.9e-50 201.1 205 46.8
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.2e-49 200.7 208 47.1
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 1.5e-49 200.3 205 46.8
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.5e-49 200.3 205 48.3
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.5e-49 200.3 225 42.7
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.0e-49 199.9 202 46.5
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 9.8e-49 197.6 205 46.3
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 9.8e-49 197.6 227 45.4
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.3e-48 197.2 211 48.8
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.3e-48 197.2 211 48.8
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.3e-48 197.2 244 43.4
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.2e-48 196.4 196 46.9
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 2.2e-48 196.4 204 50.0
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.9e-48 195.3 227 44.5
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 8.3e-48 194.5 244 43.0
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.1e-47 194.1 218 44.5
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.1e-47 194.1 211 46.9
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.9e-47 193.4 218 47.2
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.4e-47 193.0 204 45.6
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.4e-47 193.0 209 46.4
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.2e-47 192.6 218 48.2
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.2e-46 190.7 225 43.6
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.6e-46 190.3 218 47.2
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 6.0e-46 188.3 200 46.5
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 2.3e-45 186.4 219 42.5
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.3e-45 186.4 207 44.4
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 6.6e-45 184.9 179 50.3
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 8.1e-43 177.9 181 45.9
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 8.1e-43 177.9 146 54.8
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 8.1e-43 177.9 214 42.1
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.1e-42 177.6 217 42.9
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.1e-42 177.6 214 42.1
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.4e-42 177.2 217 43.8
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.8e-42 176.8 226 40.3
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 3.1e-42 176.0 217 42.4
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 3.1e-42 176.0 205 42.0
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 4.0e-42 175.6 216 43.5
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 4.0e-42 175.6 189 45.0
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 5.2e-42 175.3 217 43.3
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 6.8e-42 174.9 225 40.9
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 8.9e-42 174.5 214 40.7
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.2e-40 169.9 163 49.1
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 7.1e-39 164.9 198 41.4
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 9.2e-39 164.5 205 39.5
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.1e-36 157.5 214 41.6
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.9e-36 156.8 197 43.7
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 9.5e-36 154.5 214 41.1
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 9.5e-36 154.5 196 40.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.6e-35 152.5 125 50.4
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 3.1e-34 149.4 188 43.1
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.2e-34 148.7 181 40.9
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.4e-33 146.0 138 50.0
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.7e-32 143.7 139 50.4
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.2e-32 143.3 199 39.7
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.2e-32 143.3 199 39.7
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 3.8e-32 142.5 198 38.4
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 5.4e-31 138.7 197 37.1
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 7.8e-30 134.8 187 39.0
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.5e-28 130.6 159 42.8
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.5e-28 130.6 225 33.8
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 4.3e-28 129.0 214 35.5
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.4e-26 124.0 205 35.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.1e-26 122.9 158 41.8
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.5e-25 120.6 179 36.3
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.9e-24 116.3 143 42.0
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 4.6e-22 109.0 143 38.5
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 3.3e-20 102.8 104 47.1
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.4e-18 97.4 115 44.3
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.2e-17 94.4 158 33.5
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.0e-13 81.3 66 54.5
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 4.8e-11 72.4 68 44.1
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 1.1e-10 71.2 80 41.2
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 6.9e-10 68.6 66 43.9
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 1.2e-09 67.8 66 42.4
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 2.0e-09 67.0 104 35.6
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.0e-09 67.0 61 47.5
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.5e-09 65.9 61 49.2
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 4.9e-08 62.4 104 35.6


User provided reference genes

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