Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 2.1e-152 542.3 276 100.0
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 3.3e-105 385.6 255 77.3
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.3e-98 363.6 266 70.3
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.0e-98 361.7 279 71.3
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.2e-96 357.1 273 68.9
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.6e-96 356.7 273 68.1
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 6.8e-95 351.3 236 72.9
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.0e-94 349.7 248 72.2
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 3.4e-94 349.0 236 74.2
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 9.9e-94 347.4 273 67.8
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.3e-93 347.1 255 70.6
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 3.7e-93 345.5 254 70.5
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 6.4e-93 344.7 274 66.4
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.6e-91 340.1 234 72.2
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 4.6e-91 338.6 244 69.7
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.0e-90 337.4 256 68.4
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.3e-90 336.3 231 71.9
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.3e-90 336.3 256 66.8
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.3e-90 336.3 270 67.8
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 5.1e-90 335.1 259 68.7
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.3e-89 332.4 259 68.3
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 7.3e-89 331.3 239 68.2
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 7.3e-89 331.3 262 65.6
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.2e-88 330.5 242 67.4
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.6e-88 330.1 235 72.8
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.1e-88 329.7 265 64.9
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 4.7e-88 328.6 242 68.2
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 8.1e-88 327.8 240 69.2
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.8e-87 326.6 217 74.2
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.8e-87 326.6 282 63.1
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.8e-87 326.6 254 68.5
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.8e-87 326.6 258 66.7
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.8e-87 326.6 245 68.2
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 2.4e-87 326.2 234 70.5
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 5.2e-87 325.1 236 67.8
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 8.9e-87 324.3 232 72.0
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 8.9e-87 324.3 244 66.4
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.2e-86 323.9 270 64.4
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.2e-86 323.9 244 66.4
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.5e-86 323.6 233 67.8
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.5e-86 323.6 251 65.3
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 2.0e-86 323.2 214 74.3
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 3.4e-86 322.4 241 66.8
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.7e-85 320.1 248 66.5
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 3.8e-85 318.9 210 75.2
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 4.9e-85 318.5 229 69.0
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 4.9e-85 318.5 209 74.2
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.1e-84 317.4 261 65.5
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.1e-84 317.4 262 63.0
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.9e-84 316.6 265 63.8
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.9e-84 316.6 229 68.1
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-84 316.6 215 71.6
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-84 316.6 215 71.6
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.4e-84 316.2 249 65.5
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 5.4e-84 315.1 235 68.1
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.4e-84 315.1 249 65.5
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 7.1e-84 314.7 205 74.6
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 9.2e-84 314.3 253 63.6
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 9.2e-84 314.3 237 67.1
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.2e-83 313.9 281 62.3
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.6e-83 313.5 215 70.2
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.7e-83 312.8 234 67.1
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.7e-83 312.8 241 66.4
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.7e-83 312.8 215 70.2
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 3.5e-83 312.4 266 61.3
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 6.0e-83 311.6 259 62.9
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 6.0e-83 311.6 245 65.7
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 7.8e-83 311.2 205 74.1
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.7e-82 310.1 238 66.0
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.3e-82 309.7 264 63.3
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 2.3e-82 309.7 234 67.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 5.1e-82 308.5 255 63.5
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.1e-82 308.5 199 75.9
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.1e-82 308.5 275 60.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 6.6e-82 308.1 222 68.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 6.6e-82 308.1 207 73.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.7e-82 307.8 233 67.8
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 8.7e-82 307.8 241 61.4
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.5e-81 306.2 211 69.7
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.3e-81 305.8 211 69.7
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.3e-81 305.4 268 61.2
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 7.3e-81 304.7 199 74.9
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 7.3e-81 304.7 215 67.9
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.2e-80 303.9 207 72.5
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.2e-80 303.9 207 72.5
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.6e-80 303.5 200 73.0
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 2.1e-80 303.1 205 73.7
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 2.1e-80 303.1 247 61.9
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 2.1e-80 303.1 238 68.1
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 3.6e-80 302.4 207 70.0
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 6.2e-80 301.6 229 65.1
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 3.1e-79 299.3 235 64.3
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 6.9e-79 298.1 220 69.1
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 9.0e-79 297.7 199 72.9
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-77 293.9 227 67.8
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.7e-77 293.5 227 67.8
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.7e-77 293.5 227 67.8
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 2.2e-77 293.1 231 68.4
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.2e-77 293.1 194 75.8
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 4.9e-77 292.0 231 68.4
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.1e-76 290.8 225 66.7
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 4.2e-76 288.9 199 70.4
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 7.1e-76 288.1 200 71.5
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 7.1e-76 288.1 275 63.6
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.5e-75 285.8 245 60.4
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.3e-74 283.9 185 76.8
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.3e-74 283.9 203 70.4
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.7e-74 283.5 197 70.6
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 3.0e-74 282.7 213 67.6
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 8.7e-74 281.2 198 69.7
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.1e-71 272.7 206 64.6
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 1.2e-70 270.8 242 59.1
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.2e-70 270.8 203 65.5
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.5e-70 270.4 180 74.4
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.6e-70 269.6 212 64.2
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 5.8e-70 268.5 199 67.8
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.7e-69 266.9 206 64.6
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 3.8e-69 265.8 200 66.5
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 8.4e-69 264.6 240 56.2
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 1.9e-68 263.5 239 56.5
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.2e-67 260.8 178 70.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 7.9e-67 258.1 180 70.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.8e-66 256.9 244 57.4
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 5.1e-66 255.4 178 70.2
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 5.6e-65 251.9 242 54.5
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 4.8e-64 248.8 199 65.3
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.1e-59 233.4 172 69.8
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.5e-57 227.3 265 50.9
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 5.3e-55 218.8 166 64.5
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 5.3e-55 218.8 166 64.5
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.3e-53 214.2 182 61.0
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 2.2e-53 213.4 235 51.9
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-50 204.1 193 57.5
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.9e-49 200.3 132 75.8
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 5.0e-45 185.7 112 75.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.2e-44 181.8 188 50.0
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.4e-42 177.6 199 50.3
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 5.7e-41 172.2 139 69.1
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 9.1e-39 164.9 112 71.4
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 3.2e-36 156.4 176 54.0
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 8.8e-34 148.3 94 75.5
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.0e-33 147.1 88 76.1
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.0e-29 134.8 218 40.8
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.3e-29 134.4 207 39.6
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 6.1e-27 125.6 216 39.4
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 5.7e-25 119.0 192 38.0
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.2e-24 117.1 247 37.7
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.5e-22 109.8 204 33.8
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.3e-21 107.8 71 73.2
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 8.5e-21 105.1 83 59.0
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.0e-17 94.0 66 71.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.3e-16 91.3 212 29.7
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.2e-11 74.7 114 43.9
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 4.4e-09 66.2 67 58.2
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 5.7e-09 65.9 65 50.8
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 3.7e-08 63.2 38 73.7
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 4.8e-08 62.8 151 33.1


User provided reference genes

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