Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 0.0e+00 1131.3 645 100.0
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 3.8e-213 745.3 763 62.8
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 4.4e-201 705.3 647 64.8
Ca_11451_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 9.7e-185 651.0 544 70.6
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 5.6e-124 449.1 666 51.5
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 3.5e-102 376.7 650 46.2
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 5.7e-100 369.4 657 43.8
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 7.4e-100 369.0 655 43.8
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 1.2e-89 335.1 664 40.5
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 9.4e-87 325.5 660 40.2
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 1.3e-83 315.1 657 40.6
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 2.2e-83 314.3 661 40.4
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 3.8e-80 303.5 663 40.4
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 2.7e-78 297.4 652 40.2
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 1.8e-77 294.7 649 40.2
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 8.8e-77 292.4 683 39.1
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 3.6e-70 270.4 662 37.6
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 3.6e-70 270.4 648 38.4
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 3.0e-69 267.3 663 38.9
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 6.3e-67 259.6 658 38.0
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 2.1e-62 244.6 643 36.4
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 1.6e-57 228.4 619 36.2
Lalb_Chr06g0171411 Lupinus albus HOM05D003265 ORTHO05D003819 4.4e-52 210.3 450 37.3
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 7.0e-50 203.0 644 33.7
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 1.0e-48 199.1 627 36.0
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 2.9e-48 197.6 630 35.4
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 1.9e-47 194.9 489 35.6
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 3.3e-47 194.1 643 30.8
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 5.8e-44 183.3 609 32.0
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.7e-43 181.8 572 33.2
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 2.9e-43 181.0 653 36.0
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 2.4e-42 177.9 661 34.6
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 7.0e-42 176.4 624 34.5
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 9.2e-42 176.0 596 33.2
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 1.6e-41 175.3 675 35.7
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 3.5e-41 174.1 591 33.0
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 7.8e-41 172.9 660 32.7
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 3.0e-40 171.0 604 32.8
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.5e-39 168.7 676 35.9
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.3e-39 167.5 680 32.1
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 9.5e-39 166.0 583 33.8
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 9.5e-39 166.0 574 35.4
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.6e-38 165.2 610 34.1
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 6.2e-38 163.3 617 33.9
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.1e-37 161.0 703 31.3
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 8.9e-37 159.5 551 33.2
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 2.0e-36 158.3 625 36.3
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 3.4e-36 157.5 601 32.4
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 7.5e-36 156.4 603 30.8
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 2.2e-35 154.8 610 33.0
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 2.9e-35 154.5 627 29.7
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 6.4e-35 153.3 563 34.6
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 1.9e-34 151.8 717 30.3
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 5.4e-34 150.2 560 33.2
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 9.2e-34 149.4 636 29.9
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 1.6e-33 148.7 531 33.0
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 1.6e-33 148.7 548 34.1
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 4.6e-33 147.1 638 31.7
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 1.7e-32 145.2 577 34.0
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 2.3e-32 144.8 547 35.5
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 2.3e-32 144.8 524 31.3
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 8.6e-32 142.9 510 31.0
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 1.9e-31 141.7 592 30.4
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.9e-31 141.7 702 28.8
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 9.5e-31 139.4 678 28.8
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 9.5e-31 139.4 605 29.9
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 9.5e-31 139.4 511 32.1
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 3.6e-30 137.5 680 30.3
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 3.6e-30 137.5 561 29.2
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 4.7e-30 137.1 482 32.2
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 1.8e-29 135.2 264 39.0
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 6.8e-29 133.3 523 29.4
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 8.9e-29 132.9 316 39.9
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 8.9e-29 132.9 620 34.4
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.5e-28 132.1 612 29.7
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 9.9e-28 129.4 441 32.7
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 8.3e-27 126.3 639 30.0
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 1.9e-26 125.2 559 31.7
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 1.9e-26 125.2 601 28.8
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 3.2e-26 124.4 549 30.2
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 3.2e-26 124.4 571 32.4
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 7.1e-26 123.2 546 29.7
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 9.2e-26 122.9 584 31.3
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 9.2e-26 122.9 650 28.2
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 1.2e-25 122.5 570 33.3
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 1.2e-25 122.5 532 30.3
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 1.2e-25 122.5 537 33.5
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 3.0e-24 117.9 572 30.6
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 3.0e-24 117.9 641 29.6
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 3.9e-24 117.5 619 27.5
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 5.1e-24 117.1 651 27.3
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 8.6e-24 116.3 551 27.0
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 1.5e-23 115.5 585 30.8
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 9.5e-23 112.8 524 30.7
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 1.6e-22 112.1 558 30.1
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 2.8e-22 111.3 551 28.9
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 3.6e-22 110.9 516 32.4
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 3.6e-22 110.9 229 39.3
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 1.1e-21 109.4 545 31.0
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 1.4e-21 109.0 563 28.2
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 1.4e-21 109.0 537 28.7
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.2e-21 107.1 523 32.9
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 6.8e-21 106.7 661 27.7
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 6.8e-21 106.7 514 31.3
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 8.9e-21 106.3 604 29.3
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 8.9e-21 106.3 572 28.7
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.2e-20 105.9 566 30.9
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 1.5e-20 105.5 570 31.4
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.4e-20 104.0 613 27.9
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.9e-19 101.3 576 27.6
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.9e-19 101.3 669 27.5
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 6.4e-19 100.1 476 30.7
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 1.1e-18 99.4 435 29.7
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 2.4e-18 98.2 162 41.4
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 4.2e-18 97.4 544 28.9
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 4.2e-18 97.4 524 32.8
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 5.4e-18 97.1 580 33.8
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 5.4e-18 97.1 580 33.8
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 2.7e-17 94.7 500 28.6
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 7.8e-17 93.2 572 32.7
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 7.8e-17 93.2 622 29.7
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 2.3e-16 91.7 97 59.8
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 3.0e-16 91.3 570 33.0
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 5.1e-16 90.5 558 29.2
DCAR_014962 Daucus carota HOM05D003265 ORTHO05D003819 6.6e-16 90.1 511 28.0
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 1.5e-15 89.0 694 29.1
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 1.9e-15 88.6 573 32.5
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 2.5e-15 88.2 574 27.4
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 3.3e-15 87.8 696 27.0
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 7.3e-15 86.7 567 27.5
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.2e-14 85.9 584 29.8
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 2.1e-14 85.1 529 25.5
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 2.1e-14 85.1 641 26.8
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 2.8e-14 84.7 549 27.3
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 3.6e-14 84.3 556 28.4
DCAR_015272 Daucus carota HOM05D003265 ORTHO05D015078 4.7e-14 84.0 650 27.8
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 1.4e-13 82.4 598 26.8
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 2.4e-13 81.6 263 31.9
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 2.4e-13 81.6 571 27.1
CARHR131570 Cardamine hirsuta HOM05D003265 ORTHO05D003819 3.1e-13 81.3 572 28.3
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 4.0e-13 80.9 570 25.8
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 5.3e-13 80.5 124 39.5
Lalb_Chr06g0171391 Lupinus albus HOM05D003265 ORTHO05D003819 1.5e-12 79.0 105 49.5
Actinidia05271 Actinidia chinensis HOM05D003265 ORTHO05D003819 2.6e-12 78.2 457 29.5
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 5.8e-12 77.0 256 32.0
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 7.6e-12 76.6 564 27.0
CSS0008335 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 9.9e-12 76.3 259 33.6
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 2.9e-11 74.7 275 28.4
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 4.9e-11 73.9 573 28.4
BolC4t28061H Brassica oleracea HOM05D003265 ORTHO05D003819 6.4e-11 73.6 605 27.4
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.4e-11 73.2 135 39.3
CSS0028328 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.4e-11 73.2 637 26.8
CsaV3_5G026000 Cucumis sativus L. HOM05D003265 ORTHO05D003819 8.4e-11 73.2 481 26.6
Lj2A107T58 Lonicera japonica HOM05D003265 ORTHO05D003819 8.4e-11 73.2 94 48.9
vmacro07090 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 1.1e-10 72.8 562 25.1
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.2e-10 70.9 135 38.5
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 5.4e-10 70.5 484 28.9
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.2e-09 69.3 496 26.6
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 1.2e-09 69.3 510 27.3
Sabra19G0043100 Salix brachista HOM05D003265 ORTHO05D010313 2.1e-09 68.6 138 39.9
Sabra19G0046300 Salix brachista HOM05D003265 ORTHO05D010313 2.1e-09 68.6 138 39.9
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.7e-09 68.2 558 23.8
Gohir.D11G344100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 3.5e-09 67.8 296 27.4
Gorai.007G374500 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.5e-09 67.8 296 27.4
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 3.5e-09 67.8 467 27.2
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 3.5e-09 67.8 530 29.2
Manes.09G080700 Manihot esculenta HOM05D003265 ORTHO05D003819 4.6e-09 67.4 480 29.8
FAN06G2521 Fragaria x ananassa HOM05D003265 ORTHO05D003819 6.0e-09 67.0 165 38.8
Lalb_Chr06g0171401 Lupinus albus HOM05D003265 ORTHO05D003819 6.0e-09 67.0 85 52.9
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 7.8e-09 66.6 610 25.4
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 1.0e-08 66.2 276 30.8
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 1.7e-08 65.5 529 25.1
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.7e-08 65.5 439 26.4
CSS0009096 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.0e-08 64.7 641 26.4
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 3.0e-08 64.7 98 45.9
Potri.010G217000 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.0e-08 64.7 446 28.7
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 3.9e-08 64.3 591 24.9
Gohir.A11G325100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 8.7e-08 63.2 304 26.6
CSS0047270 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.5e-07 62.4 641 26.2
Lj1g0005050 Lotus japonicus HOM05D003265 ORTHO05D003819 3.3e-07 61.2 78 46.2
CAN.G608.11 Capsicum annuum HOM05D003265 ORTHO05D003819 4.3e-07 60.8 172 27.9
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 1.3e-06 59.3 582 25.6
TWI38G2066 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.6e-06 58.9 473 25.6
CSS0024766 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 2.8e-06 58.2 211 30.3
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 2.8e-06 58.2 485 27.4
C04p65680 Brassica napus HOM05D003265 ORTHO05D003819 4.8e-06 57.4 604 24.5
FAN10G1642 Fragaria x ananassa HOM05D003265 ORTHO05D003819 6.2e-06 57.0 502 27.3


User provided reference genes

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