Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 1.5e-148 529.6 286 100.0
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 4.4e-81 305.4 288 68.4
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 1.2e-54 217.6 324 49.7
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 5.7e-52 208.8 320 49.7
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 3.7e-51 206.1 320 50.0
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.0e-49 200.3 317 46.7
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 5.9e-49 198.7 332 45.8
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 3.8e-48 196.1 318 46.5
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.1e-46 190.3 296 48.3
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 3.6e-46 189.5 322 46.0
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 3.6e-46 189.5 303 45.9
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.0e-45 188.0 336 42.0
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 2.0e-44 183.7 293 48.1
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 4.4e-44 182.6 306 46.7
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 4.4e-44 182.6 302 46.0
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 7.4e-44 181.8 341 39.9
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.3e-43 181.0 336 42.9
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.7e-43 180.6 331 40.8
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.7e-43 180.6 334 42.8
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.2e-43 180.3 331 40.5
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 2.2e-43 180.3 331 44.4
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.8e-43 179.9 331 41.7
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.7e-43 179.5 331 40.5
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 8.2e-43 178.3 330 43.0
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.8e-42 177.2 325 41.5
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 2.4e-42 176.8 321 43.3
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 5.3e-42 175.6 322 43.8
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 5.3e-42 175.6 327 43.4
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 6.9e-42 175.3 329 44.1
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 9.1e-42 174.9 294 43.5
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.5e-41 174.1 305 42.3
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 3.4e-41 172.9 294 45.9
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 3.4e-41 172.9 289 47.8
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 5.9e-41 172.2 306 47.1
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.7e-40 170.6 310 41.3
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 3.8e-40 169.5 326 42.6
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 5.0e-40 169.1 323 41.2
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.1e-39 167.9 301 42.9
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.5e-39 166.8 324 40.7
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 3.2e-39 166.4 322 42.9
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 4.2e-39 166.0 319 42.3
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 9.4e-39 164.9 294 45.2
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 9.4e-39 164.9 307 41.4
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 9.4e-39 164.9 340 39.1
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.2e-38 164.5 308 41.2
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.2e-38 164.5 307 42.7
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.6e-38 162.9 318 42.5
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.7e-38 162.5 290 46.2
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 7.9e-38 161.8 330 40.9
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.3e-37 160.2 318 41.8
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 2.3e-37 160.2 310 43.9
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 6.7e-37 158.7 316 39.9
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 8.8e-37 158.3 335 40.3
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 1.1e-36 157.9 323 39.3
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.6e-36 156.8 311 40.8
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 9.7e-36 154.8 319 42.9
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.7e-35 152.9 308 39.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.1e-34 151.4 303 38.9
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 1.8e-34 150.6 297 39.4
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 5.3e-34 149.1 298 40.3
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 7.0e-34 148.7 326 39.9
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 7.0e-34 148.7 335 38.2
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-33 146.7 239 45.2
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-33 146.7 239 45.2
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 4.5e-33 146.0 323 39.6
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.0e-32 144.8 338 40.2
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-32 144.1 229 44.5
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-32 144.1 229 44.5
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-32 143.7 229 43.2
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.2e-32 143.7 328 39.9
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 2.9e-32 143.3 280 39.3
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 6.5e-32 142.1 305 39.0
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.5e-32 142.1 304 39.8
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.1e-31 141.4 307 36.5
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.5e-31 140.2 297 38.4
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 4.2e-31 139.4 336 37.8
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 4.2e-31 139.4 239 44.4
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 4.2e-31 139.4 239 44.4
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 7.2e-31 138.7 285 38.6
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.6e-30 137.5 286 39.9
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 8.0e-30 135.2 332 36.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 6.7e-29 132.1 211 48.8
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.3e-27 127.9 296 34.8
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.8e-27 126.7 325 35.4
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.8e-27 125.9 309 36.2
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.4e-26 124.4 292 36.0
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.8e-26 124.0 216 44.4
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 2.4e-26 123.6 291 36.1
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 5.3e-26 122.5 311 38.3
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 7.7e-25 118.6 316 34.8
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.0e-24 118.2 301 36.5
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.3e-24 117.9 296 35.8
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.3e-24 117.9 117 57.3
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.7e-24 117.5 307 34.9
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.9e-24 116.7 236 38.1
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.9e-24 116.7 236 38.1
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.9e-24 116.7 312 34.0
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-23 114.8 206 40.3
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.5e-23 114.4 236 37.7
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 3.2e-23 113.2 323 34.7
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 4.2e-23 112.8 295 36.3
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 5.5e-23 112.5 285 36.5
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 9.4e-23 111.7 296 35.5
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 9.4e-23 111.7 296 35.5
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 9.4e-23 111.7 347 36.0
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-22 110.9 206 39.8
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.7e-22 110.2 298 38.3
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.7e-22 110.2 206 39.3
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 3.6e-22 109.8 307 36.2
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 4.7e-22 109.4 296 35.1
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 6.1e-22 109.0 288 37.5
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 6.1e-22 109.0 285 38.2
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 8.0e-22 108.6 283 33.2
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.8e-21 107.5 310 37.4
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 2.3e-21 107.1 293 35.2
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 4.0e-21 106.3 296 34.8
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 5.2e-21 105.9 296 36.5
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 5.2e-21 105.9 204 38.7
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.2e-20 104.8 307 35.5
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.5e-20 104.4 308 36.0
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.5e-20 104.4 297 33.3
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.0e-20 104.0 301 34.6
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.6e-20 103.6 303 35.0
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 3.4e-20 103.2 79 69.6
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 5.7e-20 102.4 285 34.4
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 7.5e-20 102.1 287 33.4
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.8e-19 100.1 296 31.8
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.8e-19 99.4 335 31.0
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.1e-18 98.2 245 35.1
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.4e-18 97.1 293 31.1
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.2e-17 94.7 256 37.9
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.2e-17 94.7 217 36.9
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 2.7e-17 93.6 307 34.5
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 4.5e-17 92.8 201 35.3
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 2.2e-16 90.5 286 35.0
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 3.8e-16 89.7 148 42.6
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 3.8e-16 89.7 291 34.0
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 1.5e-15 87.8 300 32.0
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 4.2e-15 86.3 295 31.9
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 4.2e-15 86.3 398 30.7
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 7.2e-15 85.5 290 30.0
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 1.6e-14 84.3 308 32.8
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 3.0e-13 80.1 289 32.9
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 5.2e-13 79.3 296 29.4
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.6e-12 77.0 283 30.7
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 4.4e-12 76.3 401 29.4
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 5.7e-12 75.9 247 34.4
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.7e-11 74.3 272 31.6
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.1e-10 70.1 342 27.2
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 9.2e-10 68.6 267 28.1
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.6e-09 67.8 291 28.9
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.5e-09 66.6 292 29.8
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 3.5e-09 66.6 299 25.8
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 4.5e-09 66.2 295 30.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.7e-08 64.3 280 28.2
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 5.0e-08 62.8 102 43.1
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 5.0e-08 62.8 231 25.1
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 6.6e-08 62.4 146 35.6
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.5e-07 61.2 352 28.4
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.5e-07 61.2 241 28.2
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.9e-07 60.8 70 50.0
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.9e-07 60.8 267 27.7
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.9e-07 60.8 287 28.2
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 4.3e-07 59.7 356 27.2
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 4.3e-07 59.7 174 29.9
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 9.5e-07 58.5 270 29.6
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.2e-06 58.2 298 25.8
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.6e-06 57.8 305 28.5
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 2.8e-06 57.0 291 26.8
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 4.7e-06 56.2 267 31.5
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 6.1e-06 55.8 311 29.9
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 8.0e-06 55.5 298 25.5


User provided reference genes

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