Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g066720 Medicago truncatula HOM05D007569 ORTHO05D009268 5.2e-87 324.3 160 100.0
Psat6g070160 Pisum sativum HOM05D007569 ORTHO05D009268 1.9e-25 119.8 92 69.6
TPR.G28044 Trifolium pratense HOM05D007569 ORTHO05D009268 3.4e-22 109.0 82 69.5
Lj5g0021553 Lotus japonicus HOM05D007569 ORTHO05D009268 3.5e-19 99.0 68 72.1
Glyma.10G050600 Glycine max HOM05D007569 ORTHO05D009268 8.2e-16 87.8 97 59.8
Glyma.13G138100 Glycine max HOM05D007569 ORTHO05D009268 1.7e-13 80.1 97 54.6
Medtr7g100860 Medicago truncatula HOM05D007569 ORTHO05D009268 1.2e-11 73.9 81 54.3
Lalb_Chr01g0018971 Lupinus albus HOM05D007569 ORTHO05D009268 2.1e-11 73.2 69 52.2
Lalb_Chr25g0289201 Lupinus albus HOM05D007569 ORTHO05D009268 7.9e-11 71.2 70 55.7
Potri.016G087000 Populus trichocarpa HOM05D007569 ORTHO05D009268 1.0e-10 70.9 60 63.3
MD04G1102400 Malus domestica HOM05D007569 ORTHO05D009268 1.3e-10 70.5 71 49.3
QL07p045078 Quercus lobata HOM05D007569 ORTHO05D009268 1.3e-10 70.5 88 48.9
Sabra16G0093200 Salix brachista HOM05D007569 ORTHO05D009268 1.8e-10 70.1 60 60.0
Haze_20627 Corylus avellana HOM05D007569 ORTHO05D009268 3.0e-10 69.3 78 52.6
CiPaw.10G136400 Carya illinoinensis HOM05D007569 ORTHO05D009268 5.1e-10 68.6 76 50.0
CiPaw.10G136600 Carya illinoinensis HOM05D007569 ORTHO05D009268 5.1e-10 68.6 76 50.0
Psat3g044160 Pisum sativum HOM05D007569 ORTHO05D009268 2.5e-09 66.2 59 57.6
CiPaw.09G178900 Carya illinoinensis HOM05D007569 ORTHO05D009268 7.4e-09 64.7 91 44.0
arahy.Tifrunner.gnm1.ann1.4H2E4D Arachis hypogaea HOM05D007569 ORTHO05D009268 1.6e-08 63.5 59 59.3
arahy.Tifrunner.gnm1.ann1.PY3JPZ Arachis hypogaea HOM05D007569 ORTHO05D009268 1.6e-08 63.5 59 59.3
RcHm_v2.0_Chr3g0469031 Rosa chinensis HOM05D007569 ORTHO05D009268 4.8e-08 62.0 73 50.7
TAR623G1008 Trochodendron aralioides HOM05D007569 ORTHO05D009268 4.8e-08 62.0 63 57.1
Lsat_1_v5_gn_6_30260 Lactuca sativa HOM05D007569 ORTHO05D009268 1.4e-07 60.5 97 40.2
Phvul.007G107600 Phaseolus vulgaris HOM05D007569 ORTHO05D009268 1.4e-07 60.5 78 50.0
CANSAT80G1933 Cannabis sativa HOM05D007569 ORTHO05D009268 3.1e-07 59.3 50 58.0
Ciclev10013224m.g Citrus clementina HOM05D007569 ORTHO05D009268 3.1e-07 59.3 92 43.5
Manes.08G004500 Manihot esculenta HOM05D007569 ORTHO05D009268 3.1e-07 59.3 60 51.7
COL.COLO4_27060 Corchorus olitorius HOM05D007569 ORTHO05D009268 4.1e-07 58.9 85 41.2
GSVIVG01025645001 Vitis vinifera HOM05D007569 ORTHO05D009268 9.0e-07 57.8 54 55.6
Actinidia19698 Actinidia chinensis HOM05D007569 ORTHO05D009268 1.2e-06 57.4 60 48.3
Prupe.6G240500 Prunus persica HOM05D007569 ORTHO05D009268 1.2e-06 57.4 73 43.8
Potri.006G130400 Populus trichocarpa HOM05D007569 ORTHO05D009268 2.0e-06 56.6 60 56.7
Gohir.A13G025100 Gossypium hirsutum HOM05D007569 ORTHO05D009268 2.6e-06 56.2 60 50.0
Cpa.g.sc368.3 Carica papaya HOM05D007569 ORTHO05D009268 5.9e-06 55.1 88 42.0
Duzib093G0005 Durio zibethinus HOM05D007569 ORTHO05D009268 7.7e-06 54.7 60 50.0
TWI74G0066 Tripterygium wilfordii HOM05D007569 ORTHO05D009268 1.0e-05 54.3 48 56.2


User provided reference genes

Program Settings