Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g066600 Medicago truncatula HOM05D000029 ORTHO05D006987 1.5e-25 118.6 54 100.0
Glyma.18G282100 Glycine max HOM05D000029 ORTHO05D006987 2.0e-14 81.6 45 77.8
Medtr7g020850 Medicago truncatula HOM05D000029 ORTHO05D006987 2.0e-14 81.6 45 80.0
Psat3g190240 Pisum sativum HOM05D000029 ORTHO05D006987 7.5e-14 79.7 45 77.8
Lj1g0019881 Lotus japonicus HOM05D000094 ORTHO05D006987 9.8e-14 79.3 45 77.8
Phvul.008G019200 Phaseolus vulgaris HOM05D000029 ORTHO05D006987 3.7e-13 77.4 45 73.3
Ca_07074_v3 Cicer arietinum L. HOM05D000094 ORTHO05D006987 6.3e-13 76.6 45 77.8
Glyma.08G257700 Glycine max HOM05D000029 ORTHO05D006987 6.3e-13 76.6 45 73.3
Sabra03G0118800 Salix brachista HOM05D000029 ORTHO05D006987 8.3e-13 76.3 45 71.1
TPR.G4541 Trifolium pratense HOM05D000029 ORTHO05D006987 1.4e-12 75.5 45 73.3
COL.COLO4_21788 Corchorus olitorius HOM05D000029 ORTHO05D006987 4.1e-12 73.9 45 73.3
TWI18G0498 Tripterygium wilfordii HOM05D000029 ORTHO05D006987 5.4e-12 73.6 45 73.3
MD13G1129700 Malus domestica HOM05D000029 ORTHO05D006987 7.0e-12 73.2 45 71.1
MD16G1130000 Malus domestica HOM05D000094 ORTHO05D006987 7.0e-12 73.2 45 71.1
TWI36G1620 Tripterygium wilfordii HOM05D000094 ORTHO05D006987 9.2e-12 72.8 45 73.3
Sabra01G0046300 Salix brachista HOM05D000029 ORTHO05D006987 1.2e-11 72.4 45 71.1
Manes.08G102000 Manihot esculenta HOM05D000029 ORTHO05D006987 1.6e-11 72.0 45 71.1
QL03p049603 Quercus lobata HOM05D000029 ORTHO05D006987 1.6e-11 72.0 45 71.1
MELO3C017812.2 Cucumis melo HOM05D000094 ORTHO05D006987 2.0e-11 71.6 45 71.1
CsaV3_4G002280 Cucumis sativus L. HOM05D000094 ORTHO05D006987 2.0e-11 71.6 45 71.1
Potri.003G163300 Populus trichocarpa HOM05D000029 ORTHO05D006987 2.0e-11 71.6 45 68.9
VMungo1383G3495 Vigna mungo HOM05D000094 ORTHO05D006987 2.0e-11 71.6 45 68.9
Duzib052G0468 Durio zibethinus HOM05D000029 ORTHO05D006987 3.5e-11 70.9 45 68.9
Thecc.02G193700 Theobroma cacao HOM05D000029 ORTHO05D006987 3.5e-11 70.9 45 71.1
Dinv19143 Davidia involucrata HOM05D000094 ORTHO05D006987 5.9e-11 70.1 45 68.9
Lalb_Chr17g0336471 Lupinus albus HOM05D000029 ORTHO05D006987 5.9e-11 70.1 41 75.6
Prupe.1G216600 Prunus persica HOM05D000029 ORTHO05D006987 5.9e-11 70.1 45 68.9
Nn4g22150 Nelumbo nucifera HOM05D000029 ORTHO05D006987 7.8e-11 69.7 45 66.7
EL10Ac6g13599 Beta vulgaris HOM05D000029 ORTHO05D006987 1.0e-10 69.3 45 66.7
Potri.001G066700 Populus trichocarpa HOM05D000029 ORTHO05D006987 1.0e-10 69.3 45 68.9
Atru.chr12.1403 Acer truncatum HOM05D000094 ORTHO05D006987 1.3e-10 68.9 45 66.7
Aa31LG3G14370 Aethionema arabicum HOM05D000029 ORTHO05D006987 1.3e-10 68.9 45 68.9
MSTRG.460 Avicennia marina HOM05D000029 ORTHO05D006987 1.3e-10 68.9 45 68.9
FAN07G0625 Fragaria x ananassa HOM05D000094 ORTHO05D006987 1.3e-10 68.9 45 64.4
MBI07_g07336_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D006987 1.3e-10 68.9 45 66.7
RcHm_v2.0_Chr4g0429001 Rosa chinensis HOM05D000094 ORTHO05D006987 1.3e-10 68.9 45 64.4
ClCG07G011880 Citrullus lanatus HOM05D000094 ORTHO05D006987 1.7e-10 68.6 45 66.7
FvH4_4g22780 Fragaria vesca HOM05D000094 ORTHO05D006987 1.7e-10 68.6 45 64.4
FAN12G0671 Fragaria x ananassa HOM05D000094 ORTHO05D006987 1.7e-10 68.6 45 64.4
PSO017G0690 Papaver somniferum HOM05D000029 ORTHO05D006987 1.7e-10 68.6 45 64.4
PSO478G4799 Papaver somniferum HOM05D000029 ORTHO05D006987 1.7e-10 68.6 45 64.4
Hund25505 Selenicereus undatus HOM05D000029 ORTHO05D006987 1.7e-10 68.6 45 66.7
Ah.02g131510 Amaranthus hybridus HOM05D002780 ORTHO05D003254 2.3e-10 68.2 45 66.7
CSS0040803 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D006987 2.3e-10 68.2 45 68.9
CANSAT01G1549 Cannabis sativa HOM05D000029 ORTHO05D006987 2.3e-10 68.2 45 64.4
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 2.3e-10 68.2 45 64.4
Sed0002308 Sechium edule HOM05D000094 ORTHO05D006987 2.3e-10 68.2 45 66.7
GSVIVG01001078001 Vitis vinifera HOM05D000029 ORTHO05D006987 2.9e-10 67.8 45 66.7
Duzib132G0701 Durio zibethinus HOM05D000029 ORTHO05D006987 3.9e-10 67.4 45 64.4
Lj6C837T3 Lonicera japonica HOM05D000029 ORTHO05D006987 3.9e-10 67.4 45 64.4
Cpa.g.sc1571.2 Carica papaya HOM05D000094 ORTHO05D006987 5.0e-10 67.0 45 62.2
CiPaw.06G108800 Carya illinoinensis HOM05D000029 ORTHO05D006987 5.0e-10 67.0 45 66.7
TAR622G0344 Trochodendron aralioides HOM05D000029 ORTHO05D006987 6.6e-10 66.6 44 65.9
Gohir.A04G100700 Gossypium hirsutum HOM05D000029 ORTHO05D006987 8.6e-10 66.2 45 68.9
Gohir.D04G140000 Gossypium hirsutum HOM05D000029 ORTHO05D006987 8.6e-10 66.2 45 68.9
Gorai.012G124900 Gossypium raimondii HOM05D000029 ORTHO05D006987 8.6e-10 66.2 45 68.9
Rhsim12G0017900 Rhododendron simsii HOM05D000029 ORTHO05D006987 8.6e-10 66.2 45 64.4
arahy.Tifrunner.gnm1.ann1.5FYJ3P Arachis hypogaea HOM05D000029 ORTHO05D006987 1.1e-09 65.9 45 64.4
arahy.Tifrunner.gnm1.ann1.GED73I Arachis hypogaea HOM05D000029 ORTHO05D006987 1.1e-09 65.9 45 64.4
Sc11g0000140 Simmondsia chinensis HOM05D000029 ORTHO05D006987 1.1e-09 65.9 45 64.4
vmacro01025 Vaccinium macrocarpon HOM05D000029 ORTHO05D006987 1.1e-09 65.9 45 64.4
CSS0031606 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D006987 1.5e-09 65.5 45 64.4
THA.LOC104825465 Tarenaya hassleriana HOM05D000029 ORTHO05D006987 1.5e-09 65.5 44 63.6
Lalb_Chr04g0258111 Lupinus albus HOM05D000094 ORTHO05D006987 1.9e-09 65.1 41 70.7
SalBow2G0268 Salvia bowleyana HOM05D000029 ORTHO05D006987 1.9e-09 65.1 45 66.7
Actinidia22122 Actinidia chinensis HOM05D000029 ORTHO05D006987 2.5e-09 64.7 45 62.2
CiPaw.05G102100 Carya illinoinensis HOM05D000029 ORTHO05D006987 2.5e-09 64.7 45 64.4
Cc11_g15100 Coffea canephora HOM05D000029 ORTHO05D006987 3.3e-09 64.3 45 62.2
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 3.3e-09 64.3 45 62.2
Thhalv10013721m.g Eutrema salsugineum HOM05D000029 ORTHO05D006987 4.3e-09 63.9 45 64.4
Aqoxy5G03159 Aquilegia oxysepala HOM05D000029 ORTHO05D006987 5.6e-09 63.5 45 60.0
CSS0031430 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D006987 7.3e-09 63.2 45 57.8
Duzib248G0660 Durio zibethinus HOM05D000029 ORTHO05D006987 7.3e-09 63.2 45 66.7
PGR119G2412 Punica granatum HOM05D000094 ORTHO05D006987 7.3e-09 63.2 41 65.9
Solyc05g023760.3 Solanum lycopersicum HOM05D000094 ORTHO05D006987 7.3e-09 63.2 45 57.8
Sopen05g018380 Solanum pennellii HOM05D000094 ORTHO05D006987 7.3e-09 63.2 45 57.8
BcaNung01165 Brassica carinata HOM05D000094 ORTHO05D006987 9.5e-09 62.8 45 62.2
CARHR200170 Cardamine hirsuta HOM05D000029 ORTHO05D006987 1.2e-08 62.4 45 62.2
Eucgr.B03552 Eucalyptus grandis HOM05D000029 ORTHO05D006987 1.2e-08 62.4 45 62.2
BcaNung01876 Brassica carinata HOM05D000029 ORTHO05D006987 2.1e-08 61.6 45 60.0
C02p06040 Brassica napus HOM05D000029 ORTHO05D006987 2.1e-08 61.6 45 60.0
BraA02t05157Z Brassica rapa HOM05D000029 ORTHO05D006987 2.1e-08 61.6 45 60.0
Carub.0006s1146 Capsella rubella HOM05D000029 ORTHO05D006987 2.1e-08 61.6 45 60.0
Cfa009442 Carpinus fangiana HOM05D000094 ORTHO05D006987 2.1e-08 61.6 45 62.2
AL6G23910 Arabidopsis lyrata HOM05D000029 ORTHO05D006987 4.7e-08 60.5 45 57.8
AT5G13290 Arabidopsis thaliana HOM05D000029 ORTHO05D006987 4.7e-08 60.5 45 57.8
BolC2t06546H Brassica oleracea HOM05D000029 ORTHO05D006987 4.7e-08 60.5 45 57.8
BcaC04g19125 Brassica carinata HOM05D000029 ORTHO05D006987 6.1e-08 60.1 45 60.0
A02p01830 Brassica napus HOM05D000029 ORTHO05D006987 6.1e-08 60.1 45 57.8
CSS0004805 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D006987 6.1e-08 60.1 45 55.6
Sed0022664 Sechium edule HOM05D000094 ORTHO05D006987 6.1e-08 60.1 45 57.8
Actinidia30592 Actinidia chinensis HOM05D000029 ORTHO05D006987 8.0e-08 59.7 41 61.0
Haze_12493 Corylus avellana HOM05D000094 ORTHO05D006987 8.0e-08 59.7 45 60.0
Manes.09G187402 Manihot esculenta HOM05D000094 ORTHO05D006987 8.0e-08 59.7 39 71.8
Oeu019439.1 Olea europaea HOM05D000029 ORTHO05D006987 8.0e-08 59.7 44 63.6
Oeu019441.1 Olea europaea HOM05D000029 ORTHO05D006987 8.0e-08 59.7 44 63.6
BolC9t59218H Brassica oleracea HOM05D000029 ORTHO05D006987 1.0e-07 59.3 45 62.2
A03p05910 Brassica napus HOM05D000029 ORTHO05D006987 1.8e-07 58.5 41 61.0
A10p24920 Brassica napus HOM05D000029 ORTHO05D006987 1.8e-07 58.5 45 60.0
C03p06810 Brassica napus HOM05D000029 ORTHO05D006987 1.8e-07 58.5 41 61.0
BolC3t13194H Brassica oleracea HOM05D000029 ORTHO05D006987 1.8e-07 58.5 41 61.0
BraA03t09929Z Brassica rapa HOM05D000029 ORTHO05D006987 1.8e-07 58.5 41 61.0
BraA10t44554Z Brassica rapa HOM05D000029 ORTHO05D006987 1.8e-07 58.5 45 60.0
AUR62005708 Chenopodium quinoa HOM05D000109 ORTHO05D006987 1.8e-07 58.5 45 57.8
DCAR_024629 Daucus carota HOM05D000029 ORTHO05D006987 1.8e-07 58.5 45 53.3
Peaxi162Scf00128g01754 Petunia axillaris HOM05D000094 ORTHO05D006987 1.8e-07 58.5 45 55.6
Sp6g30700 Schrenkiella parvula HOM05D000029 ORTHO05D006987 1.8e-07 58.5 45 57.8
PGSC0003DMG400002250 Solanum tuberosum HOM05D000094 ORTHO05D006987 1.8e-07 58.5 45 55.6
AUR62028847 Chenopodium quinoa HOM05D000109 ORTHO05D006987 4.0e-07 57.4 45 55.6
C09p63790 Brassica napus HOM05D000029 ORTHO05D006987 5.2e-07 57.0 45 55.6
Dinv09209 Davidia involucrata HOM05D000029 ORTHO05D006987 5.2e-07 57.0 45 60.0
CAN.G302.4 Capsicum annuum HOM05D000094 ORTHO05D006987 1.5e-06 55.5 45 53.3
TAR629G2019 Trochodendron aralioides HOM05D000029 ORTHO05D006987 1.5e-06 55.5 45 57.8


User provided reference genes

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