Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 0.0e+00 1647.1 965 100.0
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 0.0e+00 1540.0 966 91.9
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 0.0e+00 1320.1 972 79.7
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 0.0e+00 1279.6 980 76.6
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 0.0e+00 1236.5 969 74.1
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 0.0e+00 1228.0 967 73.4
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 0.0e+00 1206.4 973 73.4
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 0.0e+00 1172.5 972 72.7
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 0.0e+00 1136.3 972 71.3
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 0.0e+00 1118.2 956 71.4
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.6e-300 1036.2 949 67.4
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 5.7e-298 1027.7 986 63.8
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.4e-291 1006.5 978 64.7
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 4.9e-289 998.0 943 61.5
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 1.3e-281 973.4 949 60.7
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 2.8e-276 955.7 954 61.4
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 3.1e-275 952.2 973 61.0
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 1.3e-273 946.8 985 60.3
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 5.4e-272 941.4 946 59.2
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 9.2e-272 940.6 945 59.7
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 9.2e-272 940.6 956 59.6
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 1.2e-271 940.3 972 59.1
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 2.7e-271 939.1 986 58.7
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 3.0e-270 935.6 946 59.9
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 2.5e-269 932.6 955 61.8
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 2.4e-264 916.0 944 60.8
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 5.4e-264 914.8 1004 56.5
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 1.2e-263 913.7 953 56.3
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 1.7e-262 909.8 970 59.2
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.8e-259 899.8 973 57.5
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 8.4e-257 891.0 943 57.2
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.4e-256 888.3 946 56.3
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 2.7e-255 885.9 577 90.6
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 6.0e-255 884.8 1066 52.1
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.9e-254 882.1 946 55.3
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 5.6e-253 878.2 945 56.2
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.6e-252 876.7 858 59.6
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 1.2e-250 870.5 949 56.2
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.6e-250 869.4 985 55.5
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.4e-250 869.0 959 57.6
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 3.8e-249 865.5 942 55.0
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 5.4e-248 861.7 951 56.6
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 7.1e-248 861.3 950 56.3
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 1.0e-246 857.4 948 56.8
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 3.9e-246 855.5 918 57.0
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 2.5e-245 852.8 948 56.4
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 5.6e-245 851.7 952 56.2
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 1.3e-244 850.5 944 53.8
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 4.8e-244 848.6 927 57.0
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 2.6e-242 842.8 954 54.5
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.8e-242 841.6 921 56.7
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 7.1e-240 834.7 921 58.5
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 1.6e-239 833.6 954 58.3
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 3.5e-239 832.4 956 53.8
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.5e-239 832.4 922 55.7
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 1.0e-238 830.9 949 54.9
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.1e-237 827.4 922 53.6
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.4e-235 820.5 962 54.4
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 2.4e-235 819.7 948 56.0
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.5e-234 817.0 940 52.3
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 4.2e-232 808.9 947 54.7
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 3.5e-231 805.8 948 55.9
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.0e-230 804.3 861 58.7
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 2.3e-230 803.1 955 55.1
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 2.3e-230 803.1 971 55.0
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.5e-229 800.4 938 51.4
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 1.9e-229 800.0 910 58.6
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 1.9e-229 800.0 946 51.8
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 9.6e-229 797.7 974 53.6
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 6.2e-228 795.0 953 54.7
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 8.2e-228 794.7 945 51.7
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 3.1e-227 792.7 951 51.0
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 6.9e-227 791.6 957 55.6
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 3.4e-226 789.3 943 52.4
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 5.8e-226 788.5 950 52.8
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.1e-224 784.3 952 53.4
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 1.4e-224 783.9 986 52.3
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 2.5e-224 783.1 945 53.4
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 3.2e-224 782.7 932 52.5
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 7.1e-224 781.6 947 53.6
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 9.3e-224 781.2 1009 50.9
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 6.1e-223 778.5 946 52.1
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 5.1e-222 775.4 943 50.9
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 1.9e-221 773.5 940 51.6
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 4.3e-221 772.3 946 51.2
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 9.7e-221 771.2 962 52.3
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 5.3e-219 765.4 944 52.1
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 3.8e-217 759.2 950 47.8
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 2.3e-214 750.0 944 50.5
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 8.8e-214 748.0 951 51.5
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 6.9e-211 738.4 448 85.3
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 2.9e-209 733.0 967 50.2
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 1.4e-206 724.2 954 50.7
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 2.9e-201 706.4 894 49.9
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 2.5e-184 650.2 823 52.2
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 4.2e-184 649.4 946 47.1
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.5e-181 641.0 988 47.0
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 2.4e-179 633.6 394 83.2
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 2.1e-175 620.5 948 45.0
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 6.1e-175 619.0 960 43.9
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 7.8e-146 522.3 711 48.4
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 9.6e-120 435.6 615 46.7
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 1.7e-116 424.9 525 55.8
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 4.2e-115 420.2 918 39.7
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.6e-114 416.8 615 48.8
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 7.9e-114 416.0 337 75.7
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 9.1e-94 349.4 503 49.1
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 1.1e-91 342.4 605 40.8
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.3e-86 323.6 267 62.9
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.2e-72 279.3 310 61.3
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 1.2e-64 252.7 261 52.5
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.7e-61 241.5 328 49.7
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 5.9e-61 240.4 265 46.8
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.9e-60 238.0 418 47.4
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 1.1e-59 236.1 310 50.3
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 3.6e-58 231.1 1004 28.2
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.6e-53 215.7 192 60.4
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.3e-52 212.6 314 51.3
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 7.0e-46 190.3 1139 24.7
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 3.0e-44 184.9 377 42.2
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 9.2e-30 136.7 333 43.8
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 6.0e-29 134.0 753 26.2
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 2.5e-27 128.6 710 25.5
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 5.2e-25 120.9 129 54.3
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 8.9e-25 120.2 129 53.5
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.9e-23 115.2 96 65.6
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.8e-23 114.8 128 54.7
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 6.4e-23 114.0 116 55.2
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 1.1e-22 113.2 98 61.2
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 2.7e-21 108.6 92 60.9
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.3e-20 106.3 92 60.9
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 3.0e-20 105.1 113 54.9
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 8.7e-20 103.6 218 37.2
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.5e-19 102.1 115 51.3
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 3.3e-19 101.7 108 55.6
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 5.6e-19 100.9 359 32.6
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 4.6e-13 81.3 69 58.0
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 6.7e-12 77.4 207 29.5
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-11 75.5 54 72.2
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 2.4e-09 68.9 58 56.9
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.1e-09 68.6 54 68.5
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 9.0e-09 67.0 69 60.9
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.6e-08 63.9 47 72.3
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 9.9e-08 63.5 83 44.6
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.7e-07 62.8 93 44.1
arahy.Tifrunner.gnm1.ann1.3Z7JIG Arachis hypogaea HOM05D006386 ORTHO05D007575 2.2e-07 62.4 95 46.3
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 1.4e-06 59.7 93 44.1
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.2e-06 58.2 58 60.3
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 7.1e-06 57.4 50 54.0


User provided reference genes

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