Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 7.0e-295 1016.5 511 100.0
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 4.9e-224 781.2 445 87.6
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 1.8e-213 746.1 443 85.3
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 1.4e-205 719.9 441 82.8
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 2.3e-205 719.2 441 82.3
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 1.7e-203 713.0 441 81.9
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 8.2e-195 684.1 437 78.0
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 8.2e-195 684.1 437 78.0
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 4.0e-181 638.6 415 79.3
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.0e-168 597.4 434 67.3
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.0e-168 597.4 434 67.3
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 2.3e-168 596.3 436 66.7
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 1.2e-166 590.5 432 68.5
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 3.0e-165 585.9 434 66.6
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 6.8e-165 584.7 434 65.9
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 2.0e-164 583.2 434 67.5
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 2.0e-164 583.2 431 65.9
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 3.4e-164 582.4 434 67.1
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 7.5e-164 581.3 437 64.1
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 8.3e-163 577.8 435 66.9
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 1.8e-162 576.6 435 66.9
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 3.2e-162 575.9 440 65.7
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 3.2e-162 575.9 443 65.9
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 5.4e-162 575.1 443 65.9
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 7.8e-161 571.2 432 65.7
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 3.0e-160 569.3 507 58.6
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 1.9e-159 566.6 438 65.3
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.9e-159 566.6 460 63.5
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 3.3e-159 565.8 435 64.6
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 2.8e-158 562.8 424 65.8
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 1.4e-157 560.5 440 62.7
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.2e-156 557.4 460 63.0
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 7.5e-156 554.7 408 66.4
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 4.9e-155 552.0 428 62.6
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 1.1e-154 550.8 437 62.7
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 1.1e-154 550.8 437 62.7
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 1.9e-154 550.1 444 62.8
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 2.4e-154 549.7 436 62.2
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 7.8e-153 544.7 435 62.1
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 1.0e-152 544.3 437 62.5
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.0e-152 544.3 438 62.1
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 2.3e-152 543.1 434 62.0
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 3.0e-152 542.7 434 64.3
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 6.6e-152 541.6 436 61.5
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 1.9e-151 540.0 437 62.2
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 3.3e-151 539.3 495 56.6
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 4.3e-151 538.9 438 61.4
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 2.8e-150 536.2 436 61.5
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 2.8e-150 536.2 439 61.0
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 1.1e-149 534.3 458 59.2
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 1.4e-149 533.9 433 61.2
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 5.2e-149 531.9 428 59.3
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 6.8e-149 531.6 429 64.1
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.2e-148 530.8 436 59.2
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 1.5e-148 530.4 436 60.3
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 3.4e-148 529.3 436 59.6
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 5.8e-148 528.5 432 61.8
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 5.8e-148 528.5 467 55.7
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 2.9e-147 526.2 439 60.8
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 4.9e-147 525.4 544 51.1
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 6.4e-147 525.0 442 61.1
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 3.2e-146 522.7 466 58.2
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 7.1e-146 521.5 437 58.8
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.2e-145 520.8 380 66.3
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.6e-145 520.4 383 66.6
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 1.5e-143 513.8 444 59.5
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 5.6e-143 511.9 464 56.7
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 2.8e-142 509.6 434 59.7
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 3.1e-141 506.1 382 64.9
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 4.0e-141 505.8 384 66.4
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 8.9e-141 504.6 435 57.0
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 1.3e-139 500.7 358 67.9
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 3.8e-139 499.2 436 58.9
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 4.1e-138 495.7 561 48.7
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 5.4e-138 495.4 384 62.5
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 1.2e-137 494.2 280 90.0
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.6e-137 493.8 371 66.8
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 2.7e-137 493.0 443 55.8
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 5.1e-136 488.8 457 54.3
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 4.0e-133 479.2 429 55.9
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.2e-129 467.6 461 53.6
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 1.4e-125 454.1 424 55.9
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 1.2e-121 441.0 316 68.4
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 1.5e-119 434.1 328 65.9
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 1.3e-118 431.0 453 53.2
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 1.1e-117 427.9 404 55.9
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 1.7e-115 420.6 319 64.6
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.9e-114 417.2 382 56.0
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.5e-108 397.5 439 47.2
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 1.4e-106 391.0 432 48.6
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 1.1e-103 381.3 431 45.5
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 2.2e-102 377.1 285 62.5
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.2e-100 371.3 291 61.9
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 5.9e-100 369.0 437 44.9
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 3.8e-99 366.3 313 59.1
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.1e-90 338.2 249 66.7
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 3.3e-87 326.6 361 47.6
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 1.4e-82 311.2 283 56.5
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 4.7e-65 253.1 155 82.6
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 5.7e-63 246.1 156 80.8
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 3.5e-60 236.9 287 46.7
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 4.7e-57 226.5 196 58.7
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 9.8e-55 218.8 185 60.0
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 2.7e-52 210.7 158 70.3
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 8.0e-49 199.1 303 39.6
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 5.2e-48 196.4 146 69.2
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 2.0e-47 194.5 129 72.9
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 2.6e-47 194.1 332 35.8
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.1e-45 188.7 148 66.2
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 7.5e-39 166.0 200 44.0
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.2e-36 158.7 123 62.6
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 1.9e-34 151.4 92 77.2
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 2.7e-28 131.0 386 28.8
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 7.8e-28 129.4 96 60.4
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.7e-27 128.3 98 62.2
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 3.3e-26 124.0 92 63.0
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 2.1e-25 121.3 167 42.5
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 6.0e-12 76.6 51 66.7
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 5.1e-11 73.6 55 61.8
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 7.3e-10 69.7 70 52.9
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 2.1e-09 68.2 73 53.4
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 2.1e-09 68.2 73 53.4
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 3.6e-09 67.4 66 53.0
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 8.1e-09 66.2 63 49.2
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 8.4e-06 56.2 59 50.8


User provided reference genes

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