Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g060820 Medicago truncatula HOM05D001191 ORTHO05D000979 5.0e-96 354.4 171 100.0
CDE04G0351 Ceratophyllum demersum HOM05D001191 ORTHO05D000979 4.2e-10 68.9 96 51.0
CDE07G1765 Ceratophyllum demersum HOM05D001191 ORTHO05D000979 9.3e-10 67.8 96 49.0
Actinidia39992 Actinidia chinensis HOM05D001191 ORTHO05D000979 2.1e-09 66.6 96 49.0
MBI07_g31084_MAGBIO Magnolia biondii HOM05D001191 ORTHO05D000979 2.1e-09 66.6 102 46.1
COL.COLO4_15494 Corchorus olitorius HOM05D001191 ORTHO05D000979 2.7e-09 66.2 102 46.1
PSO210G0812 Papaver somniferum HOM05D001191 ORTHO05D000979 2.7e-09 66.2 104 45.2
PSO832G0703 Papaver somniferum HOM05D001191 ORTHO05D000979 2.7e-09 66.2 104 45.2
vmacro10369 Vaccinium macrocarpon HOM05D001191 ORTHO05D000979 2.7e-09 66.2 96 47.9
PGR004G1900 Punica granatum HOM05D001191 ORTHO05D000979 3.5e-09 65.9 96 46.9
Actinidia03291 Actinidia chinensis HOM05D001191 ORTHO05D000979 4.6e-09 65.5 96 47.9
Duzib128G0767 Durio zibethinus HOM05D001191 ORTHO05D000979 4.6e-09 65.5 96 45.8
Eucgr.H04225 Eucalyptus grandis HOM05D001191 ORTHO05D000979 4.6e-09 65.5 96 47.9
Gohir.A13G161400 Gossypium hirsutum HOM05D001191 ORTHO05D000979 4.6e-09 65.5 96 45.8
Gohir.D13G174600 Gossypium hirsutum HOM05D001191 ORTHO05D000979 4.6e-09 65.5 96 45.8
Gorai.013G188000 Gossypium raimondii HOM05D001191 ORTHO05D000979 4.6e-09 65.5 96 45.8
Nn1g02870 Nelumbo nucifera HOM05D001191 ORTHO05D000979 4.6e-09 65.5 96 49.0
Rhsim09G0136700 Rhododendron simsii HOM05D001191 ORTHO05D000979 4.6e-09 65.5 96 46.9
Dinv24669 Davidia involucrata HOM05D001191 ORTHO05D000979 6.1e-09 65.1 96 47.9
ECA238G1509 Erigeron canadensis HOM05D001191 ORTHO05D000979 6.1e-09 65.1 96 47.9
HanXRQChr07g0194811 Helianthus annuus HOM05D001191 ORTHO05D000979 6.1e-09 65.1 96 47.9
Potri.013G047500 Populus trichocarpa HOM05D001191 ORTHO05D000979 6.1e-09 65.1 100 47.0
Prupe.6G350600 Prunus persica HOM05D001191 ORTHO05D000979 6.1e-09 65.1 96 49.0
THA.LOC104802848 Tarenaya hassleriana HOM05D001191 ORTHO05D000979 6.1e-09 65.1 96 46.9
CSS0035627 Camellia sinensis var. sinensis HOM05D001191 ORTHO05D000979 7.9e-09 64.7 96 46.9
Manes.09G147600 Manihot esculenta HOM05D001191 ORTHO05D000979 7.9e-09 64.7 96 46.9
PSO210G5078 Papaver somniferum HOM05D001191 ORTHO05D000979 7.9e-09 64.7 96 45.8
PSO832G3950 Papaver somniferum HOM05D001191 ORTHO05D000979 7.9e-09 64.7 96 45.8
TAR633G0199 Trochodendron aralioides HOM05D001191 ORTHO05D000979 7.9e-09 64.7 96 46.9
Atru.chr2.996 Acer truncatum HOM05D001191 ORTHO05D000979 1.0e-08 64.3 100 45.0
CAN.G24.4 Capsicum annuum HOM05D001191 ORTHO05D000979 1.0e-08 64.3 113 44.2
Cc02_g08760 Coffea canephora HOM05D001191 ORTHO05D000979 1.0e-08 64.3 96 47.9
Os02g0810100 Oryza sativa ssp. japonica HOM05D001191 ORTHO05D000979 1.0e-08 64.3 96 47.9
Aa31LG5G14910 Aethionema arabicum HOM05D001191 ORTHO05D000979 1.3e-08 63.9 100 46.0
MSTRG.27373 Avicennia marina HOM05D001191 ORTHO05D000979 1.3e-08 63.9 100 48.0
CiPaw.07G073300 Carya illinoinensis HOM05D001191 ORTHO05D000979 1.3e-08 63.9 96 47.9
ClCG11G010540 Citrullus lanatus HOM05D001191 ORTHO05D000979 1.3e-08 63.9 96 47.9
MELO3C008700.2 Cucumis melo HOM05D001191 ORTHO05D000979 1.3e-08 63.9 96 47.9
CsaV3_2G009850 Cucumis sativus L. HOM05D001191 ORTHO05D000979 1.3e-08 63.9 96 47.9
DCAR_023089 Daucus carota HOM05D001191 ORTHO05D000979 1.3e-08 63.9 96 47.9
Sed0002786 Sechium edule HOM05D001191 ORTHO05D000979 1.3e-08 63.9 96 46.9
PGSC0003DMG400009793 Solanum tuberosum HOM05D001191 ORTHO05D000979 1.3e-08 63.9 102 47.1
Cfa006360 Carpinus fangiana HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
Haze_04417 Corylus avellana HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
Dinv18290 Davidia involucrata HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 45.8
FvH4_6g01790 Fragaria vesca HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
FAN02G3257 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
FAN05G1058 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
FAN05G3318 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
FAN09G2028 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
FAN14G2989 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
FAN14G3839 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
Glyma.03G250400 Glycine max HOM05D001191 ORTHO05D000979 1.8e-08 63.5 99 45.5
HanXRQChr14g0454221 Helianthus annuus HOM05D001191 ORTHO05D000979 1.8e-08 63.5 101 44.6
Nn3g19721 Nelumbo nucifera HOM05D001191 ORTHO05D000979 1.8e-08 63.5 102 45.1
Oeu009477.1 Olea europaea HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 49.0
SGA_v2.0_scaffold2G01041 Striga asiatica HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 47.9
Thecc.05G270200 Theobroma cacao HOM05D001191 ORTHO05D000979 1.8e-08 63.5 96 45.8
arahy.Tifrunner.gnm1.ann1.TMAR50 Arachis hypogaea HOM05D001191 ORTHO05D000979 2.3e-08 63.2 96 45.8
arahy.Tifrunner.gnm1.ann1.YUD80W Arachis hypogaea HOM05D001191 ORTHO05D000979 2.3e-08 63.2 96 45.8
Duzib106G1134 Durio zibethinus HOM05D001191 ORTHO05D000979 2.3e-08 63.2 96 45.8
Lj1g0026567 Lotus japonicus HOM05D001191 ORTHO05D000979 2.3e-08 63.2 102 44.1
MD12G1249200 Malus domestica HOM05D001191 ORTHO05D000979 2.3e-08 63.2 96 46.9
Medtr7g115580 Medicago truncatula HOM05D001191 ORTHO05D000979 2.3e-08 63.2 96 44.8
Psat3g006800 Pisum sativum HOM05D001191 ORTHO05D000979 2.3e-08 63.2 96 44.8
TAR362G0794 Trochodendron aralioides HOM05D001191 ORTHO05D000979 2.3e-08 63.2 96 45.8
VMungo0720G2793 Vigna mungo HOM05D001191 ORTHO05D000979 2.3e-08 63.2 96 45.8
arahy.Tifrunner.gnm1.ann1.4TB0JC Arachis hypogaea HOM05D001191 ORTHO05D000979 3.0e-08 62.8 96 45.8
arahy.Tifrunner.gnm1.ann1.8UZ9VY Arachis hypogaea HOM05D001191 ORTHO05D000979 3.0e-08 62.8 96 45.8
Ciclev10019229m.g Citrus clementina HOM05D001191 ORTHO05D000979 3.0e-08 62.8 96 46.9
MELO3C010133.2 Cucumis melo HOM05D001191 ORTHO05D000979 3.0e-08 62.8 96 43.8
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 3.0e-08 62.8 96 46.9
Aqoxy5G00184 Aquilegia oxysepala HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 46.9
CANSAT54G0553 Cannabis sativa HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 47.9
Gohir.A11G246800 Gossypium hirsutum HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 44.8
Gohir.D11G257000 Gossypium hirsutum HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 44.8
Gorai.007G275400 Gossypium raimondii HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 44.8
Lsat_1_v5_gn_8_24781 Lactuca sativa HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 45.8
Peaxi162Scf00015g02913 Petunia axillaris HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 47.9
Phvul.006G105000 Phaseolus vulgaris HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 45.8
Phvul.L001760 Phaseolus vulgaris HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 44.8
RcHm_v2.0_Chr3g0449511 Rosa chinensis HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 46.9
Sopen06g012670 Solanum pennellii HOM05D001191 ORTHO05D000979 3.9e-08 62.4 102 46.1
VMungo0540G0688 Vigna mungo HOM05D001191 ORTHO05D000979 3.9e-08 62.4 96 45.8
CSS0036375 Camellia sinensis var. sinensis HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 46.9
Ca_09458_v3 Cicer arietinum L. HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 43.8
Glyma.10G165700 Glycine max HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 44.8
Glyma.19G248000 Glycine max HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 45.8
Glyma.20G223500 Glycine max HOM05D001191 ORTHO05D000979 5.1e-08 62.0 98 45.9
Lj2C44T14 Lonicera japonica HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 46.9
Lalb_Chr04g0262101 Lupinus albus HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 45.8
Potri.019G019700 Populus trichocarpa HOM05D001191 ORTHO05D000979 5.1e-08 62.0 100 45.0
QL03p029865 Quercus lobata HOM05D001191 ORTHO05D000979 5.1e-08 62.0 97 46.4
SalBow3G3605 Salvia bowleyana HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 46.9
Hund06904 Selenicereus undatus HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 46.9
Solyc05g054970.3 Solanum lycopersicum HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 46.9
Sopen05g033430 Solanum pennellii HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 46.9
PGSC0003DMG400023410 Solanum tuberosum HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 46.9
Zm00001eb258480 Zea mays HOM05D001191 ORTHO05D000979 5.1e-08 62.0 96 46.9
Ah.06g191820 Amaranthus hybridus HOM05D001191 ORTHO05D000979 6.7e-08 61.6 96 45.8
CARHR185410 Cardamine hirsuta HOM05D001191 ORTHO05D000979 6.7e-08 61.6 96 44.8
Nitab4.5_0000914g0040 Nicotiana tabacum HOM05D001191 ORTHO05D000979 6.7e-08 61.6 96 46.9
Nitab4.5_0003965g0060 Nicotiana tabacum HOM05D001191 ORTHO05D000979 6.7e-08 61.6 96 46.9
ECA233G3804 Erigeron canadensis HOM05D001191 ORTHO05D000979 8.7e-08 61.2 96 44.8
Sed0006580 Sechium edule HOM05D001191 ORTHO05D000979 8.7e-08 61.2 96 44.8
ClCG03G009710 Citrullus lanatus HOM05D001191 ORTHO05D000979 1.1e-07 60.8 96 44.8
Duzib177G1151 Durio zibethinus HOM05D001191 ORTHO05D000979 1.1e-07 60.8 96 44.8
Migut.F00797 Erythranthe guttata HOM05D001191 ORTHO05D000979 1.1e-07 60.8 96 45.8
Lj5g0021506 Lotus japonicus HOM05D001191 ORTHO05D000979 1.1e-07 60.8 96 45.8
Rhsim05G0171900 Rhododendron simsii HOM05D001191 ORTHO05D000979 1.1e-07 60.8 96 45.8
Solyc06g036620.1 Solanum lycopersicum HOM05D001191 ORTHO05D000979 1.1e-07 60.8 102 45.1
CsaV3_1G045120 Cucumis sativus L. HOM05D001191 ORTHO05D000979 1.5e-07 60.5 96 43.8
Manes.08G139900 Manihot esculenta HOM05D001191 ORTHO05D000979 1.5e-07 60.5 102 44.1
unitig_37.g12010 Utricularia gibba HOM05D001191 ORTHO05D000979 1.5e-07 60.5 96 44.8
CARHR078610 Cardamine hirsuta HOM05D001191 ORTHO05D000979 1.9e-07 60.1 96 44.8
Lalb_Chr02g0149061 Lupinus albus HOM05D001191 ORTHO05D000979 1.9e-07 60.1 98 44.9
Medtr1g080310 Medicago truncatula HOM05D001191 ORTHO05D000979 1.9e-07 60.1 96 44.8
Medtr7g055655 Medicago truncatula HOM05D001191 ORTHO05D000979 1.9e-07 60.1 40 80.0
Zm00001eb191680 Zea mays HOM05D001191 ORTHO05D000979 1.9e-07 60.1 93 47.3
CAN.G1465.13 Capsicum annuum HOM05D001191 ORTHO05D000979 2.5e-07 59.7 100 45.0
vmacro19986 Vaccinium macrocarpon HOM05D001191 ORTHO05D000979 2.5e-07 59.7 96 45.8
Lalb_Chr06g0168261 Lupinus albus HOM05D001191 ORTHO05D000979 3.3e-07 59.3 96 44.8
Sc09g0004260 Simmondsia chinensis HOM05D001191 ORTHO05D000979 3.3e-07 59.3 96 45.8
TAR365G0039 Trochodendron aralioides HOM05D001191 ORTHO05D000979 3.3e-07 59.3 96 43.8
TAR365G0968 Trochodendron aralioides HOM05D001191 ORTHO05D000979 3.3e-07 59.3 96 43.8
ATR0787G046 Amborella trichopoda HOM05D001191 ORTHO05D000979 4.3e-07 58.9 96 43.8
AL3G14420 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 5.7e-07 58.5 96 44.8
AT3G04470 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 5.7e-07 58.5 96 44.8
EL10Ac4g08996 Beta vulgaris HOM05D001191 ORTHO05D000979 5.7e-07 58.5 96 44.8
Carub.0003s0363 Capsella rubella HOM05D001191 ORTHO05D000979 5.7e-07 58.5 96 44.8
Thhalv10003783m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 5.7e-07 58.5 96 43.8
Psat6g143480 Pisum sativum HOM05D001191 ORTHO05D000979 5.7e-07 58.5 96 43.8
Sp3g03320 Schrenkiella parvula HOM05D001191 ORTHO05D000979 5.7e-07 58.5 95 44.2
BcaC04g23718 Brassica carinata HOM05D001191 ORTHO05D000979 7.4e-07 58.2 96 43.8
C09p05420 Brassica napus HOM05D001191 ORTHO05D000979 7.4e-07 58.2 96 43.8
BolC9t53469H Brassica oleracea HOM05D001191 ORTHO05D000979 7.4e-07 58.2 96 43.8
ATR0736G008 Amborella trichopoda HOM05D001191 ORTHO05D000979 9.7e-07 57.8 98 43.9
AagrBONN_evm.TU.Sc2ySwM_362.2735 Anthoceros agrestis HOM05D001191 ORTHO05D000979 1.3e-06 57.4 96 42.7
Ca_10019_v3 Cicer arietinum L. HOM05D001191 ORTHO05D000979 1.3e-06 57.4 97 43.3
Ca_29584_v3 Cicer arietinum L. HOM05D001191 ORTHO05D000979 1.3e-06 57.4 97 43.3
BcaC06g30690 Brassica carinata HOM05D001191 ORTHO05D000979 1.6e-06 57.0 96 43.8
BcaNung02114 Brassica carinata HOM05D001191 ORTHO05D000979 1.6e-06 57.0 96 43.8
A06p38120 Brassica napus HOM05D001191 ORTHO05D000979 1.6e-06 57.0 96 43.8
C07p40090 Brassica napus HOM05D001191 ORTHO05D000979 1.6e-06 57.0 96 43.8
BolC7t44545H Brassica oleracea HOM05D001191 ORTHO05D000979 1.6e-06 57.0 96 43.8
BraA06t26726Z Brassica rapa HOM05D001191 ORTHO05D000979 1.6e-06 57.0 96 43.8
SMO180G0027 Selaginella moellendorffii HOM05D001191 ORTHO05D000979 1.6e-06 57.0 105 41.0
SMO340G0073 Selaginella moellendorffii HOM05D001191 ORTHO05D000979 1.6e-06 57.0 105 41.0
SMO340G0148 Selaginella moellendorffii HOM05D001191 ORTHO05D000979 1.6e-06 57.0 105 41.0
A09p05010 Brassica napus HOM05D001191 ORTHO05D000979 2.2e-06 56.6 96 42.7
BraA09t36140Z Brassica rapa HOM05D001191 ORTHO05D000979 2.2e-06 56.6 96 42.7
Oeu037762.1 Olea europaea HOM05D001191 ORTHO05D000979 2.2e-06 56.6 96 43.8
TAR636G1041 Trochodendron aralioides HOM05D001191 ORTHO05D000979 2.8e-06 56.2 96 42.7
AUR62001294 Chenopodium quinoa HOM05D001191 ORTHO05D000979 3.7e-06 55.8 98 43.9
AUR62025679 Chenopodium quinoa HOM05D001191 ORTHO05D000979 3.7e-06 55.8 98 43.9
Dinv29562 Davidia involucrata HOM05D001191 ORTHO05D000979 3.7e-06 55.8 96 43.8
Mapoly0105s0047 Marchantia polymorpha HOM05D001191 ORTHO05D000979 3.7e-06 55.8 93 44.1
Zm00001eb096850 Zea mays HOM05D001191 ORTHO05D000979 3.7e-06 55.8 96 44.8
Cc03_g07350 Coffea canephora HOM05D001191 ORTHO05D000979 4.8e-06 55.5 96 42.7
MBI07_g21066_MAGBIO Magnolia biondii HOM05D001191 ORTHO05D000979 4.8e-06 55.5 96 41.7
SMO119G0020 Selaginella moellendorffii HOM05D001191 ORTHO05D000979 4.8e-06 55.5 96 41.7
HPP92_005005 Vanilla planifolia HOM05D001191 ORTHO05D000979 4.8e-06 55.5 96 42.7
Cpa.g.sc59.103 Carica papaya HOM05D001191 ORTHO05D000979 6.3e-06 55.1 96 41.7
Sed0027313 Sechium edule HOM05D001191 ORTHO05D000979 6.3e-06 55.1 96 41.7
Actinidia35953 Actinidia chinensis HOM05D001191 ORTHO05D000979 8.2e-06 54.7 96 41.7
BcaB04g19635 Brassica carinata HOM05D001191 ORTHO05D000979 8.2e-06 54.7 96 42.7
AUR62004831 Chenopodium quinoa HOM05D001191 ORTHO05D000979 8.2e-06 54.7 96 42.7
AUR62040918 Chenopodium quinoa HOM05D001191 ORTHO05D000979 8.2e-06 54.7 96 42.7


User provided reference genes

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