Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 4.6e-180 634.4 317 100.0
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 8.2e-161 570.5 316 86.1
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 3.0e-155 552.0 316 83.9
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 7.2e-141 504.2 316 76.3
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 4.5e-135 485.0 313 74.1
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 1.7e-134 483.0 313 73.8
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 2.3e-134 482.6 308 74.7
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 8.6e-134 480.7 308 73.7
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 1.1e-133 480.3 313 73.5
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 3.7e-129 465.3 308 73.7
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 2.1e-116 422.9 312 62.8
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 3.6e-116 422.2 313 61.0
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 1.2e-114 417.2 312 63.1
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 1.2e-114 417.2 244 85.7
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 2.6e-114 416.0 312 62.5
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 3.7e-113 412.1 312 61.9
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 6.4e-113 411.4 310 62.9
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 3.2e-112 409.1 306 64.1
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 7.1e-112 407.9 312 60.9
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 9.2e-112 407.5 314 59.9
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 2.1e-111 406.4 312 61.9
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 2.1e-111 406.4 313 64.9
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 3.5e-111 405.6 314 59.9
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 3.5e-111 405.6 309 61.5
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 4.6e-111 405.2 312 59.3
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 1.0e-110 404.1 301 60.5
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 3.9e-110 402.1 309 61.2
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 6.6e-110 401.4 312 59.3
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 5.6e-109 398.3 305 62.6
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.2e-108 397.1 314 58.6
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 2.8e-108 396.0 308 61.0
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 2.3e-107 392.9 309 60.5
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.5e-106 390.2 309 61.5
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 2.0e-106 389.8 302 61.6
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.3e-105 387.1 310 59.7
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 2.2e-105 386.3 334 57.2
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 2.9e-105 386.0 313 58.5
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 3.8e-105 385.6 312 59.0
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 8.4e-105 384.4 305 56.4
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 3.2e-104 382.5 309 60.5
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 2.1e-103 379.8 312 58.3
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 4.6e-103 378.6 309 60.5
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 5.1e-102 375.2 305 57.4
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 6.6e-102 374.8 321 54.5
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 8.6e-102 374.4 305 57.4
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 5.6e-101 371.7 310 59.4
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 9.6e-101 370.9 310 59.4
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 1.6e-100 370.2 305 57.4
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 2.1e-100 369.8 306 54.9
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.8e-100 369.4 309 58.6
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 2.8e-100 369.4 305 57.4
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 3.6e-100 369.0 312 55.8
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 3.6e-100 369.0 305 58.0
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 8.1e-100 367.9 307 59.3
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 1.1e-99 367.5 308 54.5
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 3.4e-98 362.5 305 55.1
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 3.4e-98 362.5 306 56.2
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 5.8e-98 361.7 306 58.8
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 5.8e-98 361.7 306 58.8
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 7.6e-98 361.3 324 55.2
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 1.7e-97 360.1 312 55.8
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 1.7e-97 360.1 307 55.4
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 2.2e-97 359.8 293 56.7
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 4.9e-97 358.6 305 54.1
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 1.4e-96 357.1 305 54.8
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 1.4e-96 357.1 306 57.5
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 2.4e-96 356.3 310 58.1
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 3.2e-96 355.9 306 57.5
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 3.2e-96 355.9 306 56.5
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 1.2e-95 354.0 312 54.2
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 6.6e-94 348.2 293 54.6
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 8.7e-94 347.8 298 56.0
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 1.9e-93 346.7 268 61.9
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.3e-93 345.5 318 55.0
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 9.6e-93 344.4 311 53.7
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 9.6e-93 344.4 273 60.4
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 3.4e-90 335.9 314 51.9
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 1.2e-87 327.4 310 52.3
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.0e-86 324.3 276 58.0
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 1.1e-85 320.9 272 60.7
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.1e-85 320.9 305 53.1
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 1.3e-84 317.4 229 64.6
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 4.8e-84 315.5 311 51.1
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 2.6e-82 309.7 221 65.6
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 3.8e-81 305.8 274 56.2
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 1.4e-80 303.9 311 50.2
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 1.4e-80 303.9 307 51.8
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 2.4e-80 303.1 320 50.0
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 3.0e-78 296.2 259 54.1
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 2.1e-76 290.0 222 59.9
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 2.6e-74 283.1 244 57.8
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 1.1e-72 277.7 253 50.2
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.1e-72 277.7 288 50.7
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 7.1e-72 275.0 271 53.9
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 2.5e-69 266.5 271 51.7
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 3.8e-65 252.7 209 54.1
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 5.1e-62 242.3 312 42.9
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 9.1e-59 231.5 222 52.3
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 3.4e-58 229.6 308 42.2
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 4.2e-56 222.6 308 40.6
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.8e-54 217.2 152 60.5
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 3.9e-54 216.1 187 53.5
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 5.1e-54 215.7 321 37.1
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 3.3e-53 213.0 310 39.7
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.1e-51 208.0 225 48.9
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 5.3e-51 205.7 199 54.8
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 2.9e-49 199.9 215 48.8
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 3.2e-48 196.4 304 36.8
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.8e-43 180.6 153 55.6
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 1.9e-40 170.6 163 49.7
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 4.4e-37 159.5 169 49.1
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 3.7e-36 156.4 315 31.1
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 1.1e-35 154.8 193 45.1
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 3.5e-34 149.8 256 37.5
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 2.2e-33 147.1 105 59.0
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 1.4e-30 137.9 154 46.1
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 7.0e-27 125.6 90 60.0
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 9.1e-27 125.2 189 38.1
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 3.5e-26 123.2 73 65.8
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 5.5e-24 115.9 166 41.6
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 8.0e-23 112.1 179 39.7
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.8e-22 110.9 74 66.2
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 5.2e-22 109.4 74 64.9
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 8.8e-22 108.6 117 45.3
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 1.4e-19 101.3 145 38.6
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 3.6e-15 86.7 193 31.6
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 4.4e-13 79.7 76 42.1
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 2.2e-12 77.4 106 40.6
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 2.9e-12 77.0 136 36.0
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 2.3e-09 67.4 37 75.7


User provided reference genes

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