Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 0.0e+00 1755.7 853 100.0
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 0.0e+00 1469.9 850 82.8
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 0.0e+00 1443.7 842 83.7
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 0.0e+00 1435.2 852 81.2
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 0.0e+00 1322.0 851 75.4
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 0.0e+00 1321.2 855 74.6
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 0.0e+00 1271.1 860 74.0
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 0.0e+00 1245.0 851 73.2
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 0.0e+00 1220.3 852 71.1
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 0.0e+00 1199.1 852 68.3
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 0.0e+00 1097.0 874 63.3
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 0.0e+00 1092.8 874 63.2
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 0.0e+00 1087.8 755 71.9
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 3.5e-299 1031.6 1082 52.9
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.3e-273 945.3 806 61.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.4e-271 939.9 755 63.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 6.7e-266 921.0 904 53.2
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 4.8e-264 914.8 910 52.4
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 3.6e-251 872.1 856 51.5
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 2.2e-248 862.8 859 51.5
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 2.8e-248 862.4 904 51.4
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.0e-245 854.0 861 52.3
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 5.5e-244 848.2 917 49.7
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 7.2e-244 847.8 880 50.8
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 5.3e-239 831.6 924 48.5
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 7.0e-239 831.2 924 48.6
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 2.9e-237 825.9 889 49.0
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.7e-232 810.1 797 53.5
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.4e-231 807.0 918 47.4
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 5.3e-231 805.1 851 49.6
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.3e-229 800.4 858 49.4
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 2.2e-229 799.7 893 48.6
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.2e-229 799.7 893 48.7
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 6.5e-229 798.1 900 47.4
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 8.5e-229 797.7 899 47.8
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 1.5e-228 797.0 908 47.7
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 9.4e-228 794.3 869 47.6
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 2.3e-226 789.6 880 46.8
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 3.0e-226 789.3 893 47.6
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 3.6e-219 765.8 919 45.5
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.2e-217 760.8 1113 41.0
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 7.5e-217 758.1 875 46.1
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 4.1e-215 752.3 1114 40.6
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 6.6e-213 745.0 887 46.1
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 1.1e-212 744.2 1106 39.2
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.9e-212 743.4 876 47.4
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 5.2e-210 735.3 905 45.5
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 8.9e-210 734.6 902 44.2
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 1.4e-207 727.2 905 44.3
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 9.2e-207 724.5 1105 39.2
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 3.5e-206 722.6 876 44.1
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 4.5e-206 722.2 892 44.8
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 7.8e-206 721.5 902 43.2
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 2.3e-205 719.9 907 44.3
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 2.3e-205 719.9 906 43.4
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 1.5e-204 717.2 908 44.2
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 1.9e-204 716.8 909 44.0
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 4.3e-204 715.7 909 43.9
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 7.3e-204 714.9 1122 38.7
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 6.1e-203 711.8 566 62.4
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 2.3e-202 709.9 858 45.8
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 3.1e-202 709.5 932 41.2
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 8.9e-202 708.0 889 43.1
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 6.4e-200 701.8 911 42.6
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.9e-199 700.3 900 43.2
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 7.0e-199 698.4 889 44.0
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 2.8e-195 686.4 876 45.3
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 4.7e-195 685.6 891 43.8
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.8e-194 683.7 889 42.6
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 7.8e-190 668.3 1100 37.0
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 8.1e-187 658.3 518 66.6
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 5.4e-183 645.6 816 44.0
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 2.7e-182 643.3 856 43.1
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 4.6e-182 642.5 852 44.8
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 3.0e-181 639.8 850 42.8
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 6.6e-181 638.6 649 51.2
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.1e-178 629.8 879 41.1
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.4e-175 620.9 907 39.0
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.2e-175 619.4 861 41.5
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 3.5e-174 616.3 628 51.4
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 7.8e-174 615.1 1100 34.9
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.7e-173 614.0 881 40.5
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 5.6e-172 609.0 835 43.2
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.2e-169 601.3 758 45.3
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.2e-169 601.3 781 43.4
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 6.2e-163 578.9 920 38.4
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 7.9e-158 562.0 1065 35.3
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.0e-157 561.6 1073 34.0
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.8e-155 553.5 749 42.1
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.5e-153 547.7 979 33.8
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.0e-153 547.4 833 39.4
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.4e-145 520.0 1030 32.6
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 2.1e-142 510.8 973 33.1
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.0e-141 506.9 691 40.8
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 2.7e-134 483.8 489 52.8
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.1e-126 457.6 502 46.8
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 3.0e-125 453.8 701 40.2
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 5.0e-120 436.4 542 43.2
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 4.7e-118 429.9 855 33.6
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 3.0e-117 427.2 607 39.7
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 3.5e-113 413.7 479 47.6
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.2e-111 406.8 600 39.7
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.5e-108 398.3 945 30.2
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 2.8e-107 394.0 956 29.0
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 3.8e-104 383.6 598 38.3
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 6.6e-96 356.3 950 29.3
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 2.6e-92 344.4 721 32.7
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.2e-91 341.3 386 47.7
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 5.4e-90 336.7 1203 23.9
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 3.4e-76 290.8 460 36.1
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 8.3e-75 286.2 396 40.7
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.6e-70 271.9 368 41.0
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.0e-68 265.0 213 61.5
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 5.8e-68 263.5 686 30.8
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 2.7e-65 254.6 308 47.1
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.2e-61 240.4 238 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 6.8e-61 240.0 946 24.1
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 2.6e-60 238.0 371 37.5
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.7e-51 208.8 186 56.5
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.7e-49 201.4 161 57.1
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 3.0e-48 198.0 158 58.9
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 8.1e-46 189.9 158 55.7
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 8.1e-46 189.9 274 40.9
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 3.8e-43 181.0 156 53.8
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 8.4e-43 179.9 156 52.6
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.1e-39 169.5 154 51.9
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 4.8e-38 164.1 84 94.0
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 3.4e-36 157.9 410 30.2
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.8e-32 145.6 756 22.5
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 9.3e-26 123.2 107 55.1
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 6.7e-24 117.1 86 57.0
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 2.8e-22 111.7 132 45.5
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 3.1e-21 108.2 79 59.5
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 6.9e-13 80.5 149 35.6
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 2.6e-12 78.6 191 29.8
Medtr4g008310 Medicago truncatula HOM05D000838 ORTHO05D000656 6.3e-06 57.4 33 75.8


User provided reference genes

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