Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g056260 Medicago truncatula HOM05D000002 ORTHO05D000001 3.4e-65 251.5 126 100.0
Nn7g37206 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.4e-18 96.7 82 61.0
CSS0017329 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-17 93.2 78 59.0
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-17 92.4 78 59.0
CSS0044856 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-17 92.4 78 59.0
Nn5g30083 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.6e-17 92.4 85 58.8
Hma1.2p1_0176F.1_g077340 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.4e-17 91.7 78 59.0
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.4e-17 91.7 78 60.3
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 5.8e-17 91.3 78 59.0
Hma1.2p1_0774F.1_g216300 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.6e-17 90.9 78 59.0
CSS0047274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-16 90.1 78 57.7
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 1.3e-16 90.1 78 57.7
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 1.3e-16 90.1 78 57.7
Hma1.2p1_0184F.1_g081330 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.2e-16 89.4 75 61.3
CSS0003655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.4e-16 87.8 75 60.0
Hma1.2p1_0171F.1_g075850 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.4e-16 87.8 75 58.7
Atru.chr4.1540 Acer truncatum HOM05D000002 ORTHO05D000001 8.4e-16 87.4 78 55.1
CSS0045643 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.4e-16 87.4 82 54.9
Hma1.2p1_2049F.1_g312480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.4e-16 87.4 78 56.4
RcHm_v2.0_Chr4g0409151 Rosa chinensis HOM05D000002 ORTHO05D000001 8.4e-16 87.4 82 50.0
CSS0037972 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-15 87.0 75 58.7
CSS0039281 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-15 87.0 82 53.7
CSS0024481 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-15 86.7 75 56.0
Manes.10G112229 Manihot esculenta HOM05D000002 ORTHO05D000001 1.4e-15 86.7 78 52.6
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-15 86.7 78 57.7
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-15 86.7 78 57.7
Nn1g06976 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.4e-15 85.9 75 57.3
CSS0045479 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-15 85.1 82 52.4
Lalb_Chr23g0274091 Lupinus albus HOM05D000002 ORTHO05D000001 4.2e-15 85.1 78 56.4
Nn2g12419 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.1e-15 84.3 78 53.8
CSS0005068 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-14 83.6 73 53.4
CSS0042530 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-14 83.6 78 55.1
Hma1.2p1_0414F.1_g147800 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-14 83.6 78 53.8
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-14 83.6 78 51.3
Atru.chr5.2716 Acer truncatum HOM05D000002 ORTHO05D000001 1.6e-14 83.2 78 55.1
Hma1.2p1_1768F.1_g301590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.6e-14 83.2 79 54.4
CSS0021106 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-14 82.8 76 51.3
Sopen01g013480 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-14 82.8 78 57.7
Nn6g34560 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.5e-14 82.0 78 52.6
Nn6g34561 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.5e-14 82.0 78 52.6
Sopen01g009120 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-14 82.0 79 55.7
Sopen03g025100 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-14 82.0 79 55.7
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.0e-14 81.3 79 53.2
Hma1.2p1_0820F.1_g223995 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.9e-14 80.9 78 52.6
Hma1.2p1_0820F.1_g224020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.9e-14 80.9 78 52.6
Nn2g13324 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.9e-14 80.9 78 50.0
FvH4_1g02351 Fragaria vesca HOM05D000002 ORTHO05D000001 1.0e-13 80.5 78 50.0
Manes.09G095934 Manihot esculenta HOM05D000002 ORTHO05D000001 1.0e-13 80.5 78 52.6
Sopen05g010210 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-13 80.5 78 55.1
Sopen10g016240 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-13 80.5 78 55.1
Sopen10g021260 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-13 80.5 78 55.1
Sopen10g031560 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-13 80.5 78 55.1
Sopen11g010630 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-13 80.5 78 55.1
CSS0040283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-13 80.1 77 50.6
Nn5g26837 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.3e-13 80.1 78 53.8
Rhsim01G0080600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-13 79.7 78 53.8
CSS0016567 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-13 79.3 78 50.0
CSS0040082 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-13 79.3 78 55.1
Rhsim02G0093500 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.3e-13 79.3 78 53.8
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.3e-13 79.3 78 53.8
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.3e-13 79.3 78 53.8
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-13 79.0 78 52.6
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-13 79.0 78 52.6
CANSAT01G2627 Cannabis sativa HOM05D000002 ORTHO05D000001 3.9e-13 78.6 78 51.3
Nn1g02200 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.9e-13 78.6 78 50.0
Nn1g04729 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.1e-13 78.2 78 51.3
RhsimUnG0178000 Rhododendron simsii HOM05D000002 ORTHO05D000001 5.1e-13 78.2 75 54.7
CSS0012950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.6e-13 77.8 78 53.8
RhsimUnG0182300 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.6e-13 77.8 75 54.7
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.7e-13 77.4 78 52.6
VMungo1309G0289 Vigna mungo HOM05D002892 ORTHO05D003224 8.7e-13 77.4 78 50.0
FvH4_6g43841 Fragaria vesca HOM05D000002 ORTHO05D000001 1.1e-12 77.0 82 45.1
Nn2g10460 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-12 77.0 78 51.3
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-12 77.0 78 51.3
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-12 77.0 78 51.3
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-12 77.0 78 51.3
Sopen06g017010 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-12 77.0 78 51.3
Nn2g14659 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.5e-12 76.6 78 47.4
Rhsim03G0172600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-12 76.6 73 54.8
CSS0013769 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-12 76.3 78 51.3
Nn4g24384 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-12 76.3 78 50.0
BolC4t26198H Brassica oleracea HOM05D000002 ORTHO05D000001 2.5e-12 75.9 82 45.1
Ciclev10013956m.g Citrus clementina HOM05D000002 ORTHO05D000001 3.3e-12 75.5 78 50.0
Nn1g02421 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.3e-12 75.5 78 52.6
CSS0002244 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.3e-12 75.1 80 47.5
CSS0008175 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.3e-12 75.1 83 48.2
EL10Ac8g19578 Beta vulgaris HOM05D000002 ORTHO05D000001 7.4e-12 74.3 78 48.7
CSS0041440 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.4e-12 74.3 78 52.6
Nn4g26209 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.6e-12 73.9 75 53.3
CSS0010947 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-11 73.6 68 54.4
Sopen10g012380 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-11 73.6 78 50.0
ECA238G0437 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-11 73.2 76 43.4
CSS0025880 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-11 72.8 75 50.7
Sopen07g005890 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-11 72.8 77 50.6
ECA233G2170 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-11 72.4 78 39.7
ECA234G3833 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.6e-11 72.0 76 46.1
ECA247G3331 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.6e-11 72.0 76 43.4
ECA240G3412 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.8e-11 71.6 76 40.8
Nn4g26285 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.8e-11 71.6 68 52.9
Sopen01g007590 Solanum pennellii HOM05D000002 ORTHO05D000001 6.2e-11 71.2 82 45.1
Sopen02g009840 Solanum pennellii HOM05D000002 ORTHO05D000001 6.2e-11 71.2 82 45.1
Sopen06g007920 Solanum pennellii HOM05D000002 ORTHO05D000001 6.2e-11 71.2 82 45.1
Sopen09g029100 Solanum pennellii HOM05D000002 ORTHO05D000001 6.2e-11 71.2 82 45.1
Sopen11g022020 Solanum pennellii HOM05D000002 ORTHO05D000001 6.2e-11 71.2 77 49.4
Nn1g06669 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.1e-11 70.9 78 47.4
Sopen01g013490 Solanum pennellii HOM05D000002 ORTHO05D000001 8.1e-11 70.9 76 50.0
CSS0046990 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-10 70.5 73 50.7
ECA232G0373 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-10 70.5 76 40.8
Rhsim13G0212300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.1e-10 70.5 78 46.2
CSS0048686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-10 70.1 75 49.3
Nn1g04728 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.4e-10 70.1 74 48.6
Sopen05g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-10 70.1 77 46.8
Sopen12g026370 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-10 70.1 82 43.9
CSS0000038 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-10 69.7 67 55.2
ECA246G4670 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-10 69.7 76 40.8
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 1.8e-10 69.7 75 44.0
Sopen01g020600 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-10 69.7 82 43.9
C03p36830 Brassica napus HOM05D000002 ORTHO05D000001 2.4e-10 69.3 78 42.3
ECA234G4791 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.4e-10 69.3 77 45.5
ECA246G0479 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.4e-10 69.3 78 43.6
RcHm_v2.0_Chr1g0330731 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-10 69.3 78 43.6
ECA248G1474 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-10 68.9 73 43.8
Nn1g07710 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.1e-10 68.9 67 52.2
Atru.chr10.1094 Acer truncatum HOM05D000002 ORTHO05D000001 4.0e-10 68.6 78 43.6
ECA240G1585 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.3e-10 68.2 78 39.7
PSO541G3208 Papaver somniferum HOM05D000002 ORTHO05D000001 5.3e-10 68.2 81 48.1
CSS0019043 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.9e-10 67.8 78 50.0
CSS0044932 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.9e-10 67.8 84 45.2
ECA232G4093 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.0e-10 67.4 76 42.1
ECA238G2859 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.0e-10 67.4 75 40.0
Sopen01g013110 Solanum pennellii HOM05D000002 ORTHO05D000001 9.0e-10 67.4 78 46.2
Sopen03g020180 Solanum pennellii HOM05D000002 ORTHO05D000001 9.0e-10 67.4 78 48.7
Sopen07g012350 Solanum pennellii HOM05D000002 ORTHO05D000001 9.0e-10 67.4 78 46.2
CSS0034655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-09 66.2 73 47.9
ECA246G0354 Erigeron canadensis HOM05D000230 ORTHO05D000176 2.0e-09 66.2 78 38.5
Nn8g41156 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.0e-09 66.2 65 55.4
SHI05323 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-09 65.1 115 39.1
CSS0020765 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-08 63.5 68 48.5
Nn2g15368 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.3e-08 63.5 78 47.4
CSS0015826 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-08 62.4 66 51.5
Sopen01g011890 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-08 61.6 75 44.0
Ciclev10013585m.g Citrus clementina HOM05D000002 ORTHO05D000001 8.4e-08 60.8 75 42.7
FvH4_1g18381 Fragaria vesca HOM05D000002 ORTHO05D000001 1.1e-07 60.5 58 48.3
FvH4_7g13272 Fragaria vesca HOM05D000002 ORTHO05D000001 2.4e-07 59.3 78 39.7
Manes.08G103711 Manihot esculenta HOM05D000002 ORTHO05D000001 2.4e-07 59.3 54 51.9
CSS0047943 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-07 58.9 55 54.5
CSS0015467 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.1e-07 57.8 64 46.9
CSS0018129 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-06 57.0 83 42.2
Hma1.2p1_0764F.1_g215020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-06 57.0 68 45.6
VMungo0331G0698 Vigna mungo HOM05D000092 ORTHO05D000042 1.2e-06 57.0 52 53.8
FvH4_4g08211 Fragaria vesca HOM05D000002 ORTHO05D000001 1.6e-06 56.6 96 35.4
EL10Ac6g13816 Beta vulgaris HOM05D000002 ORTHO05D000001 2.1e-06 56.2 78 42.3
Nn8g40241 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.1e-06 56.2 78 46.2
CAN.G1438.1 Capsicum annuum HOM05D000002 ORTHO05D000001 3.5e-06 55.5 66 42.4
Nn6g34150 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.6e-06 55.1 43 62.8
FvH4_3g12332 Fragaria vesca HOM05D000002 ORTHO05D000001 6.0e-06 54.7 103 31.1
FvH4_4g30902 Fragaria vesca HOM05D000002 ORTHO05D000001 6.0e-06 54.7 103 31.1
Nn5g28050 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.0e-06 54.7 82 41.5
QL03p066067 Quercus lobata HOM05D000002 ORTHO05D000001 6.0e-06 54.7 49 51.0
SEGI_07554 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 6.0e-06 54.7 43 60.5
CSS0001792 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.9e-06 54.3 54 51.9


User provided reference genes

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