Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.5e-130 469.5 233 100.0
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 1.6e-113 412.9 240 87.5
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.0e-111 406.0 243 86.8
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 3.4e-111 405.2 240 87.1
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 5.9e-108 394.4 244 83.2
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 9.5e-106 387.1 234 85.0
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 6.1e-105 384.4 238 81.5
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 4.0e-104 381.7 239 81.6
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 1.2e-103 380.2 236 82.6
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 2.6e-103 379.0 253 75.1
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 1.7e-102 376.3 253 74.3
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 5.4e-101 371.3 238 78.6
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 3.5e-100 368.6 238 78.2
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 5.0e-91 338.2 242 69.4
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 5.0e-91 338.2 235 70.6
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 6.6e-91 337.8 222 73.0
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 7.3e-90 334.3 227 72.2
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 9.5e-90 334.0 218 72.9
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 1.6e-89 333.2 237 69.6
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 2.1e-89 332.8 237 69.2
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 3.6e-89 332.0 239 68.6
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.1e-88 330.5 226 73.5
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.1e-88 330.5 239 69.0
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 2.3e-88 329.3 231 70.1
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 5.2e-88 328.2 222 70.3
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 5.2e-88 328.2 228 71.9
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 8.9e-88 327.4 228 69.7
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 8.9e-88 327.4 243 67.5
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 1.5e-87 326.6 222 71.2
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 2.0e-87 326.2 219 72.6
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 2.6e-87 325.9 231 68.4
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 2.6e-87 325.9 219 72.6
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 2.6e-87 325.9 219 72.6
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 5.8e-87 324.7 217 74.2
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 7.5e-87 324.3 207 76.8
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.3e-86 323.6 235 68.9
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 1.3e-86 323.6 212 75.5
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 3.7e-86 322.0 234 67.9
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 4.9e-86 321.6 218 72.5
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 1.9e-85 319.7 219 72.1
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 4.1e-85 318.5 242 66.5
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 7.1e-85 317.8 211 74.9
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 7.1e-85 317.8 213 73.2
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 2.1e-84 316.2 209 72.2
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 2.7e-84 315.8 241 65.6
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 2.7e-84 315.8 230 67.4
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 2.7e-84 315.8 230 67.4
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 3.5e-84 315.5 217 69.6
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 7.8e-84 314.3 252 63.5
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 1.7e-83 313.2 247 64.8
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 8.6e-83 310.8 221 68.8
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 8.6e-83 310.8 238 66.0
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 1.5e-82 310.1 222 70.3
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 1.5e-82 310.1 232 66.4
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.9e-82 309.7 221 68.3
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 1.9e-82 309.7 222 69.4
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.3e-82 308.5 221 68.8
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 9.5e-82 307.4 221 67.9
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 4.7e-81 305.1 219 68.0
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 4.7e-81 305.1 241 62.7
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.1e-80 303.9 230 65.7
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 1.4e-80 303.5 219 68.0
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 1.4e-80 303.5 221 66.1
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 3.1e-80 302.4 220 67.7
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 5.2e-80 301.6 225 66.2
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 5.2e-80 301.6 220 68.2
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 1.2e-79 300.4 227 65.2
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 1.5e-79 300.1 238 62.2
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.4e-79 298.5 235 64.3
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 5.8e-79 298.1 224 66.1
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 7.6e-79 297.7 224 65.2
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 1.7e-78 296.6 221 66.1
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 1.7e-78 296.6 216 69.9
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 2.2e-78 296.2 224 66.1
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 2.2e-78 296.2 224 64.7
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 2.9e-78 295.8 224 64.7
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 6.4e-78 294.7 222 65.3
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 8.4e-78 294.3 218 66.1
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 3.2e-77 292.4 223 66.8
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 7.8e-76 287.7 215 66.0
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 1.7e-75 286.6 220 63.2
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 6.6e-75 284.6 222 64.0
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 8.6e-75 284.3 222 64.0
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 2.5e-74 282.7 223 61.4
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.3e-74 282.3 220 64.5
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 4.3e-74 282.0 219 63.9
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 4.7e-73 278.5 221 64.3
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.4e-72 276.9 231 59.3
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 8.9e-72 274.2 216 62.0
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 4.4e-71 271.9 243 57.6
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.5e-66 256.1 258 54.3
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.3e-65 253.8 241 55.2
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.9e-62 242.7 235 53.2
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 1.4e-61 240.4 205 62.9
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.5e-58 230.3 223 48.9
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 4.3e-58 228.8 193 62.7
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 6.9e-56 221.5 129 76.7
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 5.8e-55 218.4 129 74.4
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.9e-53 213.4 126 77.0
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 9.3e-53 211.1 126 75.4
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 3.5e-52 209.1 188 60.1
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 8.7e-51 204.5 179 62.0
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.5e-50 203.0 167 62.3
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.4e-50 201.4 166 62.0
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 1.4e-48 197.2 182 57.7
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 4.0e-48 195.7 147 67.3
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 3.8e-46 189.1 160 61.9
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.0e-43 181.0 108 78.7
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 1.3e-41 174.1 253 38.3
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 1.2e-39 167.5 146 58.2
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 1.2e-39 167.5 104 74.0
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 2.9e-38 162.9 136 58.1
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 8.7e-35 151.4 135 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.1e-34 151.0 144 51.4
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 2.6e-31 139.8 118 59.3
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.1e-27 125.6 133 51.1
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 6.7e-27 125.2 76 75.0
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.4e-26 121.7 76 71.1
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.7e-26 121.3 75 74.7
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.2e-25 120.2 76 73.7
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.7e-25 119.4 76 72.4
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.7e-25 119.4 76 72.4
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 4.8e-25 119.0 67 80.6
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.3e-25 118.6 75 73.3
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.3e-25 118.6 75 73.3
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 2.4e-24 116.7 66 78.8
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 1.0e-22 111.3 119 53.8
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 5.0e-22 109.0 161 41.0
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 1.4e-21 107.5 115 55.7
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 1.2e-20 104.4 105 55.2
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 1.6e-20 104.0 95 58.9
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 4.7e-20 102.4 64 75.0
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 1.1e-18 97.8 88 59.1
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 2.0e-18 97.1 64 68.8
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 3.3e-18 96.3 60 75.0
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 9.7e-18 94.7 74 60.8
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 7.0e-16 88.6 55 69.1
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 6.5e-14 82.0 76 52.6
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.5e-13 80.1 51 66.7
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 9.4e-13 78.2 178 30.3
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.6e-12 77.4 46 69.6
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-11 73.9 166 27.7
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 4.4e-10 69.3 176 29.0
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 4.4e-10 69.3 185 26.5
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 7.5e-10 68.6 76 46.1
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 4.8e-09 65.9 62 54.8
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 6.3e-09 65.5 169 25.4
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 5.3e-08 62.4 133 30.1
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 5.0e-06 55.8 35 65.7
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 6.5e-06 55.5 206 21.4


User provided reference genes

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