Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 5.0e-173 610.9 286 100.0
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 2.5e-161 572.0 286 93.7
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 6.1e-155 550.8 279 92.1
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.1e-147 525.8 280 88.9
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 1.0e-146 523.5 280 87.5
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 3.0e-146 521.9 284 86.6
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 4.0e-146 521.5 279 85.3
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 5.2e-146 521.2 279 86.4
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 9.7e-145 516.9 278 85.3
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 8.2e-144 513.8 281 85.8
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.4e-143 513.1 276 84.4
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 9.1e-143 510.4 277 85.6
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 2.0e-142 509.2 280 83.9
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 2.6e-142 508.8 279 83.5
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 2.6e-142 508.8 281 83.6
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 4.5e-142 508.1 276 83.7
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 7.7e-142 507.3 279 84.9
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 7.7e-142 507.3 278 82.7
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 2.9e-141 505.4 281 82.6
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 5.0e-141 504.6 279 84.2
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 5.0e-141 504.6 280 83.9
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 5.0e-141 504.6 280 83.9
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 5.0e-141 504.6 278 82.7
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 6.5e-141 504.2 279 83.9
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 6.5e-141 504.2 279 84.6
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 1.1e-140 503.4 279 82.4
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 1.9e-140 502.7 278 85.6
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 1.9e-140 502.7 279 83.9
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 2.5e-140 502.3 279 83.9
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 2.5e-140 502.3 279 83.9
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 9.4e-140 500.4 279 83.9
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 9.4e-140 500.4 279 82.8
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 1.2e-139 500.0 285 82.1
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 1.2e-139 500.0 279 83.2
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.2e-139 500.0 279 83.2
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 1.2e-139 500.0 279 83.5
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 1.2e-139 500.0 279 83.5
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 2.1e-139 499.2 279 82.1
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.1e-139 499.2 279 83.5
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 2.1e-139 499.2 278 82.7
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 2.7e-139 498.8 278 82.4
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 3.6e-139 498.4 279 82.8
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 3.6e-139 498.4 279 83.9
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 3.6e-139 498.4 279 83.9
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 4.7e-139 498.0 281 81.9
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 8.0e-139 497.3 279 82.8
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 1.0e-138 496.9 279 82.8
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.4e-138 496.5 281 81.1
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 1.8e-138 496.1 279 81.7
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.3e-138 495.7 281 82.6
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 3.0e-138 495.4 279 82.8
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 3.0e-138 495.4 279 82.4
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 6.8e-138 494.2 280 81.1
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 8.8e-138 493.8 282 82.3
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 1.2e-137 493.4 282 82.3
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 1.5e-137 493.0 279 81.4
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.5e-137 493.0 279 80.6
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.5e-137 493.0 279 80.6
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.6e-137 492.3 279 81.4
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 4.4e-137 491.5 281 80.4
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 5.7e-137 491.1 279 79.9
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 9.8e-137 490.3 284 79.9
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 9.8e-137 490.3 278 80.6
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.3e-136 490.0 280 81.8
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 1.3e-136 490.0 279 81.0
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 1.3e-136 490.0 280 80.4
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 1.7e-136 489.6 279 79.9
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 6.3e-136 487.6 278 80.9
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 6.3e-136 487.6 282 80.9
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 7.0e-135 484.2 282 79.8
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 9.1e-135 483.8 279 80.3
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 1.2e-134 483.4 280 80.4
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 1.6e-134 483.0 272 80.5
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 2.0e-134 482.6 278 78.1
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 4.5e-134 481.5 280 78.9
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 2.2e-133 479.2 285 79.3
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 2.9e-133 478.8 278 80.6
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 2.9e-133 478.8 278 80.2
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 5.0e-133 478.0 280 79.3
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 5.0e-133 478.0 280 78.2
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 8.5e-133 477.2 280 79.3
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 8.5e-133 477.2 280 79.3
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 1.1e-132 476.9 280 79.3
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 1.1e-132 476.9 275 79.6
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 1.5e-132 476.5 280 77.9
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 1.9e-132 476.1 294 77.2
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 7.2e-132 474.2 280 79.6
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 7.2e-132 474.2 280 79.6
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 9.4e-132 473.8 279 79.2
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 1.2e-131 473.4 280 77.9
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 1.2e-131 473.4 280 79.6
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 1.2e-131 473.4 280 78.2
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 1.6e-131 473.0 280 77.9
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 2.7e-131 472.2 280 78.2
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 3.6e-131 471.9 280 77.1
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 3.6e-131 471.9 280 77.1
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 3.6e-131 471.9 296 75.0
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 1.0e-130 470.3 276 76.8
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 1.4e-130 469.9 270 79.3
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 2.8e-128 462.2 276 76.8
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 8.3e-128 460.7 279 78.9
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.8e-127 459.5 279 77.8
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 9.2e-127 457.2 273 75.1
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 1.0e-125 453.8 332 66.6
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 2.3e-125 452.6 279 76.3
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 2.3e-125 452.6 278 74.8
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 6.1e-123 444.5 278 73.0
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 4.1e-119 431.8 277 71.1
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 5.4e-119 431.4 235 83.8
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.2e-118 430.3 274 73.7
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 1.6e-118 429.9 278 69.8
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 3.9e-117 425.2 240 81.7
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 3.9e-117 425.2 236 82.6
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 6.8e-114 414.5 233 79.8
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 1.6e-110 403.3 276 67.4
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 8.6e-109 397.5 280 66.8
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 6.2e-107 391.3 276 66.3
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 1.9e-103 379.8 219 81.7
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 2.0e-97 359.8 221 75.1
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 6.0e-94 348.2 191 85.3
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 6.2e-91 338.2 287 56.8
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.2e-88 329.7 288 59.0
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 4.6e-86 322.0 168 89.3
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 3.0e-85 319.3 169 89.9
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 3.9e-85 318.9 272 59.9
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 6.6e-77 291.6 258 52.3
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 9.6e-68 261.2 275 46.9
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 3.8e-64 249.2 230 53.0
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 6.5e-64 248.4 116 98.3
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 1.4e-63 247.3 279 48.0
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 1.4e-63 247.3 286 47.6
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 6.9e-50 201.8 103 89.3
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 5.7e-20 102.4 77 63.6
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 6.1e-14 82.4 52 75.0
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 6.1e-14 82.4 63 61.9
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 2.6e-12 77.0 56 60.7
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 8.0e-06 55.5 49 63.3


User provided reference genes

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