Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 1.5e-132 476.1 227 100.0
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 8.7e-64 247.7 116 98.3
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 1.9e-58 229.9 112 93.8
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.8e-56 223.4 116 88.8
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 2.3e-56 223.0 114 86.0
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 3.0e-56 222.6 116 88.8
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 3.0e-56 222.6 116 88.8
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 2.5e-55 219.5 114 88.6
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 2.5e-55 219.5 114 85.1
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 1.3e-54 217.2 116 85.3
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 2.2e-54 216.5 114 83.3
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 2.2e-54 216.5 114 84.2
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 6.3e-54 214.9 114 83.3
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 6.3e-54 214.9 112 83.9
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 6.3e-54 214.9 114 83.3
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 1.8e-53 213.4 112 85.7
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.8e-53 213.4 114 81.6
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 4.1e-53 212.2 114 81.6
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 6.9e-53 211.5 116 82.8
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.2e-52 210.7 114 82.5
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 2.0e-52 209.9 114 81.6
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.0e-52 209.9 112 82.1
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 3.4e-52 209.1 114 81.6
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 3.4e-52 209.1 115 82.6
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 3.4e-52 209.1 115 81.7
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 3.4e-52 209.1 115 81.7
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 3.4e-52 209.1 114 83.3
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 4.5e-52 208.8 114 82.5
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 4.5e-52 208.8 114 80.7
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 5.9e-52 208.4 115 80.9
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 7.7e-52 208.0 119 79.8
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 1.3e-51 207.2 114 83.3
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 1.7e-51 206.8 112 85.7
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 2.2e-51 206.5 114 81.6
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 2.9e-51 206.1 114 82.5
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 3.8e-51 205.7 114 79.8
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 5.0e-51 205.3 114 81.6
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 6.5e-51 204.9 114 78.9
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 6.5e-51 204.9 114 78.9
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 6.5e-51 204.9 114 80.7
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 6.5e-51 204.9 114 80.7
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 8.5e-51 204.5 114 81.6
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 8.5e-51 204.5 114 80.7
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 1.1e-50 204.1 114 81.6
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 1.1e-50 204.1 114 79.8
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.4e-50 203.8 114 79.8
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.4e-50 203.8 114 79.8
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.4e-50 203.8 114 80.7
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 1.9e-50 203.4 114 80.7
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 1.9e-50 203.4 114 78.9
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 2.5e-50 203.0 114 80.7
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 2.5e-50 203.0 114 78.1
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 3.2e-50 202.6 114 78.9
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 3.2e-50 202.6 114 78.1
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 3.2e-50 202.6 114 79.8
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 3.2e-50 202.6 114 78.1
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 4.2e-50 202.2 114 79.8
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 5.5e-50 201.8 114 79.8
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 5.5e-50 201.8 115 79.1
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 9.4e-50 201.1 117 79.5
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 9.4e-50 201.1 103 89.3
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 1.2e-49 200.7 114 76.3
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 1.2e-49 200.7 114 76.3
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.2e-49 200.7 114 79.8
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.2e-49 200.7 116 76.7
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 1.6e-49 200.3 114 78.9
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 2.1e-49 199.9 114 76.3
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 2.1e-49 199.9 114 77.2
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 4.7e-49 198.7 114 78.1
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 4.7e-49 198.7 114 78.1
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 6.1e-49 198.4 114 78.9
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 7.9e-49 198.0 114 79.8
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 7.9e-49 198.0 114 79.8
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 1.8e-48 196.8 114 77.2
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 1.8e-48 196.8 114 74.6
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 2.3e-48 196.4 114 77.2
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 2.3e-48 196.4 114 77.2
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 3.0e-48 196.1 114 76.3
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 3.0e-48 196.1 114 77.2
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 3.0e-48 196.1 114 78.1
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 3.0e-48 196.1 114 77.2
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 3.9e-48 195.7 114 76.3
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 6.7e-48 194.9 114 75.4
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 6.7e-48 194.9 114 77.2
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 6.7e-48 194.9 112 75.0
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 8.8e-48 194.5 114 74.6
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 8.8e-48 194.5 114 74.6
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 2.0e-47 193.4 114 77.2
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 2.0e-47 193.4 114 77.2
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 2.6e-47 193.0 114 76.3
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 2.6e-47 193.0 114 76.3
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 2.6e-47 193.0 114 76.3
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 2.6e-47 193.0 114 76.3
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 2.6e-47 193.0 114 76.3
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 3.3e-47 192.6 114 76.3
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 3.3e-47 192.6 115 75.7
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 4.4e-47 192.2 114 75.4
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 4.4e-47 192.2 113 76.1
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 5.7e-47 191.8 114 74.6
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.3e-46 190.7 112 77.7
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 1.3e-46 190.7 113 74.3
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 2.8e-46 189.5 115 73.9
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 3.7e-46 189.1 112 76.8
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 1.4e-45 187.2 112 72.3
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 1.8e-45 186.8 114 74.6
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 9.1e-45 184.5 114 73.7
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 1.2e-44 184.1 112 72.3
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 1.2e-44 184.1 124 69.4
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 2.6e-44 183.0 112 72.3
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 1.1e-42 177.6 109 70.6
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 3.2e-42 176.0 112 71.4
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 9.4e-42 174.5 114 69.3
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 4.7e-41 172.2 167 52.7
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 3.7e-38 162.5 115 62.6
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 1.4e-37 160.6 114 64.0
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 2.4e-37 159.8 114 64.9
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 4.7e-33 145.6 113 61.9
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 4.7e-33 145.6 113 60.2
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 5.4e-29 132.1 113 57.5
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 1.6e-28 130.6 76 73.7
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 1.7e-27 127.1 112 50.0
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 8.5e-27 124.8 114 51.8
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 8.3e-22 108.2 59 79.7
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 1.7e-19 100.5 55 80.0
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 8.6e-19 98.2 113 45.1
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 3.3e-18 96.3 119 44.5
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-17 94.4 112 41.1
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 1.8e-16 90.5 55 72.7
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 4.0e-16 89.4 89 47.2
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 5.9e-12 75.5 60 58.3


User provided reference genes

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