Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g051310 Medicago truncatula HOM05D000166 ORTHO05D009271 6.1e-48 193.7 93 100.0
Medtr2g087680 Medicago truncatula HOM05D000085 ORTHO05D009271 1.6e-16 89.4 46 91.3
Ca_01625_v3 Cicer arietinum L. HOM05D000085 ORTHO05D009271 4.7e-16 87.8 46 89.1
Psat5g262520 Pisum sativum HOM05D000085 ORTHO05D009271 4.7e-16 87.8 46 89.1
Phvul.005G118000 Phaseolus vulgaris HOM05D000085 ORTHO05D009271 6.2e-16 87.4 48 85.4
Lj3g0017672 Lotus japonicus HOM05D000085 ORTHO05D009271 1.1e-15 86.7 48 85.4
TPR.G4245 Trifolium pratense HOM05D000134 ORTHO05D009271 1.8e-15 85.9 45 88.9
VMungo1080G0551 Vigna mungo HOM05D000085 ORTHO05D009271 2.4e-15 85.5 48 83.3
arahy.Tifrunner.gnm1.ann1.EDLH5B Arachis hypogaea HOM05D000085 ORTHO05D009271 4.0e-15 84.7 46 87.0
arahy.Tifrunner.gnm1.ann1.P0GF1S Arachis hypogaea HOM05D000085 ORTHO05D009271 4.0e-15 84.7 46 87.0
Glyma.12G190200 Glycine max HOM05D000085 ORTHO05D009271 5.2e-15 84.3 44 88.6
Lalb_Chr14g0375931 Lupinus albus HOM05D000166 ORTHO05D009271 8.9e-15 83.6 46 84.8
arahy.Tifrunner.gnm1.ann1.5Y92CF Arachis hypogaea HOM05D000166 ORTHO05D009271 2.0e-14 82.4 53 75.5
Manes.11G099400 Manihot esculenta HOM05D000085 ORTHO05D009271 2.0e-14 82.4 47 80.9
CANSAT54G2232 Cannabis sativa HOM05D000166 ORTHO05D009271 2.6e-14 82.0 42 85.7
Hma1.2p1_0101F.1_g049620 Hydrangea macrophylla HOM05D000085 ORTHO05D009271 2.6e-14 82.0 54 70.4
Potri.001G215000 Populus trichocarpa HOM05D000085 ORTHO05D009271 2.6e-14 82.0 47 80.9
Sabra16G0128300 Salix brachista HOM05D000307 ORTHO05D009271 2.6e-14 82.0 47 80.9
CiPaw.14G093000 Carya illinoinensis HOM05D000085 ORTHO05D009271 3.4e-14 81.6 47 78.7
Cpa.g.sc103.27 Carica papaya HOM05D000166 ORTHO05D009271 4.4e-14 81.3 47 78.7
FvH4_3g26180 Fragaria vesca HOM05D000085 ORTHO05D009271 4.4e-14 81.3 47 80.9
FAN11G1976 Fragaria x ananassa HOM05D000085 ORTHO05D009271 4.4e-14 81.3 47 80.9
FAN25G2319 Fragaria x ananassa HOM05D000085 ORTHO05D009271 4.4e-14 81.3 47 80.9
Atru.chr3.3080 Acer truncatum HOM05D000085 ORTHO05D009271 7.6e-14 80.5 47 76.6
Atru.chr3.3090 Acer truncatum HOM05D001091 ORTHO05D009271 7.6e-14 80.5 47 76.6
Ciclev10028891m.g Citrus clementina HOM05D000085 ORTHO05D009271 7.6e-14 80.5 47 78.7
DCAR_006187 Daucus carota HOM05D000085 ORTHO05D009271 7.6e-14 80.5 54 68.5
Actinidia07287 Actinidia chinensis HOM05D000085 ORTHO05D009271 1.3e-13 79.7 56 66.1
Actinidia24263 Actinidia chinensis HOM05D000085 ORTHO05D009271 1.3e-13 79.7 56 66.1
RcHm_v2.0_Chr5g0049031 Rosa chinensis HOM05D000085 ORTHO05D009271 1.3e-13 79.7 47 78.7
AL6G33020 Arabidopsis lyrata HOM05D000085 ORTHO05D009271 1.7e-13 79.3 47 76.6
AT5G22050 Arabidopsis thaliana HOM05D000085 ORTHO05D009271 1.7e-13 79.3 47 76.6
Carub.0006s1969 Capsella rubella HOM05D000085 ORTHO05D009271 1.7e-13 79.3 47 76.6
Dinv33549 Davidia involucrata HOM05D000085 ORTHO05D009271 1.7e-13 79.3 54 68.5
FAN16G0233 Fragaria x ananassa HOM05D000085 ORTHO05D009271 1.7e-13 79.3 47 78.7
THA.LOC104810940 Tarenaya hassleriana HOM05D000166 ORTHO05D009271 1.7e-13 79.3 47 76.6
Haze_23583 Corylus avellana HOM05D000166 ORTHO05D009271 2.2e-13 79.0 47 78.7
Eucgr.B03810 Eucalyptus grandis HOM05D000166 ORTHO05D009271 2.2e-13 79.0 62 61.3
GSVIVG01036047001 Vitis vinifera HOM05D000085 ORTHO05D009271 2.9e-13 78.6 47 76.6
Gohir.A07G113700 Gossypium hirsutum HOM05D000085 ORTHO05D009271 3.8e-13 78.2 47 74.5
Gohir.D07G117400 Gossypium hirsutum HOM05D000166 ORTHO05D009271 3.8e-13 78.2 47 74.5
Gorai.001G126300 Gossypium raimondii HOM05D000085 ORTHO05D009271 3.8e-13 78.2 47 74.5
Lsat_1_v5_gn_4_66460 Lactuca sativa HOM05D000085 ORTHO05D009271 3.8e-13 78.2 54 66.7
MD03G1159200 Malus domestica HOM05D000085 ORTHO05D009271 3.8e-13 78.2 47 74.5
Potri.009G015600 Populus trichocarpa HOM05D000085 ORTHO05D009271 3.8e-13 78.2 47 76.6
BcaB01g04746 Brassica carinata HOM05D000085 ORTHO05D009271 4.9e-13 77.8 47 72.3
BcaC01g06608 Brassica carinata HOM05D000085 ORTHO05D009271 4.9e-13 77.8 47 72.3
A03p10560 Brassica napus HOM05D000085 ORTHO05D009271 4.9e-13 77.8 47 72.3
C03p12150 Brassica napus HOM05D000085 ORTHO05D009271 4.9e-13 77.8 47 72.3
BolC3t13688H Brassica oleracea HOM05D000085 ORTHO05D009271 4.9e-13 77.8 47 72.3
BraA03t10368Z Brassica rapa HOM05D000085 ORTHO05D009271 4.9e-13 77.8 47 72.3
CARHR191480 Cardamine hirsuta HOM05D000085 ORTHO05D009271 4.9e-13 77.8 47 74.5
COL.COLO4_25393 Corchorus olitorius HOM05D000166 ORTHO05D009271 4.9e-13 77.8 47 74.5
Thecc.09G270300 Theobroma cacao HOM05D000166 ORTHO05D009271 4.9e-13 77.8 47 74.5
Duzib168G1185 Durio zibethinus HOM05D000166 ORTHO05D009271 6.4e-13 77.4 47 74.5
Rhsim13G0197600 Rhododendron simsii HOM05D000085 ORTHO05D009271 6.4e-13 77.4 54 63.0
Sp6g23140 Schrenkiella parvula HOM05D000085 ORTHO05D009271 6.4e-13 77.4 47 74.5
TAR636G0355 Trochodendron aralioides HOM05D000166 ORTHO05D009271 6.4e-13 77.4 54 64.8
vmacro03948 Vaccinium macrocarpon HOM05D000085 ORTHO05D009271 6.4e-13 77.4 54 63.0
Migut.D02386 Erythranthe guttata HOM05D000085 ORTHO05D009271 8.4e-13 77.0 54 63.0
Actinidia37506 Actinidia chinensis HOM05D000166 ORTHO05D009271 1.4e-12 76.3 49 71.4
PGR102G0333 Punica granatum HOM05D000166 ORTHO05D009271 1.4e-12 76.3 49 71.4
MSTRG.21011 Avicennia marina HOM05D000134 ORTHO05D009271 1.9e-12 75.9 54 61.1
ClCG02G022480 Citrullus lanatus HOM05D000085 ORTHO05D009271 1.9e-12 75.9 47 74.5
Lj1C270T7 Lonicera japonica HOM05D000166 ORTHO05D009271 1.9e-12 75.9 54 64.8
QL01p019282 Quercus lobata HOM05D000166 ORTHO05D009271 1.9e-12 75.9 42 81.0
ECA234G1943 Erigeron canadensis HOM05D000085 ORTHO05D009271 2.4e-12 75.5 54 63.0
HanXRQChr10g0301241 Helianthus annuus HOM05D000085 ORTHO05D009271 2.4e-12 75.5 54 63.0
Oeu009038.1 Olea europaea HOM05D000166 ORTHO05D009271 3.2e-12 75.1 54 61.1
SGA_v2.0_scaffold22G09812 Striga asiatica HOM05D000166 ORTHO05D009271 3.2e-12 75.1 54 63.0
CSS0032419 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009271 4.2e-12 74.7 54 63.0
Duzib170G0385 Durio zibethinus HOM05D000085 ORTHO05D009271 4.2e-12 74.7 47 72.3
Sed0025450 Sechium edule HOM05D000085 ORTHO05D009271 4.2e-12 74.7 47 72.3
TWI79G1316 Tripterygium wilfordii HOM05D000085 ORTHO05D009271 4.2e-12 74.7 47 72.3
Aa31LG1G13360 Aethionema arabicum HOM05D000085 ORTHO05D009271 5.4e-12 74.3 42 76.2
Nn6g34626 Nelumbo nucifera HOM05D000166 ORTHO05D009271 5.4e-12 74.3 54 61.1
Peaxi162Scf00429g00012 Petunia axillaris HOM05D000085 ORTHO05D009271 5.4e-12 74.3 54 61.1
CAN.G742.27 Capsicum annuum HOM05D000085 ORTHO05D009271 1.6e-11 72.8 56 58.9
Prupe.6G147000 Prunus persica HOM05D000085 ORTHO05D009271 1.6e-11 72.8 47 68.1
SalBow6G6537 Salvia bowleyana HOM05D000134 ORTHO05D009271 1.6e-11 72.8 54 59.3
Solyc11g071820.3 Solanum lycopersicum HOM05D000085 ORTHO05D009271 2.1e-11 72.4 56 58.9
PGSC0003DMG400003007 Solanum tuberosum HOM05D000085 ORTHO05D009271 2.1e-11 72.4 56 58.9
Nitab4.5_0001957g0050 Nicotiana tabacum HOM05D000085 ORTHO05D009271 2.7e-11 72.0 56 57.1
Sopen11g029490 Solanum pennellii HOM05D000085 ORTHO05D009271 4.6e-11 71.2 56 58.9
arahy.Tifrunner.gnm1.ann1.XAH0DU Arachis hypogaea HOM05D000534 ORTHO05D000389 6.0e-11 70.9 41 85.4
Thhalv10015417m.g Eutrema salsugineum HOM05D000085 ORTHO05D009271 7.8e-11 70.5 40 77.5
MELO3C014524.2 Cucumis melo HOM05D000085 ORTHO05D009271 1.0e-10 70.1 50 66.0
Aqoxy1G00623 Aquilegia oxysepala HOM05D000166 ORTHO05D009271 1.3e-10 69.7 54 61.1
Cc01_g07740 Coffea canephora HOM05D000134 ORTHO05D009271 2.3e-10 68.9 54 53.7
PSO339G5754 Papaver somniferum HOM05D000166 ORTHO05D009271 2.3e-10 68.9 54 59.3
PSO384G0074 Papaver somniferum HOM05D000166 ORTHO05D009271 2.3e-10 68.9 54 59.3
EL10Ac7g16280 Beta vulgaris HOM05D000085 ORTHO05D009271 3.0e-10 68.6 47 68.1
CsaV3_6G038620 Cucumis sativus L. HOM05D000085 ORTHO05D009271 3.0e-10 68.6 46 69.6
Nitab4.5_0003032g0020 Nicotiana tabacum HOM05D000166 ORTHO05D009271 1.1e-09 66.6 55 56.4
Sc21g0006740 Simmondsia chinensis HOM05D000166 ORTHO05D009271 1.5e-09 66.2 47 61.7
CDE10G0728 Ceratophyllum demersum HOM05D000166 ORTHO05D009271 3.3e-09 65.1 54 55.6
AUR62001570 Chenopodium quinoa HOM05D000085 ORTHO05D009271 5.6e-09 64.3 54 55.6
AUR62020214 Chenopodium quinoa HOM05D000085 ORTHO05D009271 5.6e-09 64.3 54 55.6
Os07g0159700 Oryza sativa ssp. japonica HOM05D000085 ORTHO05D009271 7.3e-09 63.9 54 53.7
HPP92_001885 Vanilla planifolia HOM05D000166 ORTHO05D009271 3.6e-08 61.6 54 51.9
CDE10G1167 Ceratophyllum demersum HOM05D000166 ORTHO05D009271 8.1e-08 60.5 54 50.0
Zm00001eb300310 Zea mays HOM05D000085 ORTHO05D009271 8.1e-08 60.5 48 56.2
ATR0697G284 Amborella trichopoda HOM05D000166 ORTHO05D009271 1.4e-07 59.7 54 50.0
Mapoly0080s0031 Marchantia polymorpha HOM05D000166 ORTHO05D005603 6.9e-07 57.4 51 49.0
Lalb_Chr16g0384801 Lupinus albus HOM05D000166 ORTHO05D005603 5.8e-06 54.3 49 51.0
FAN15G2944 Fragaria x ananassa HOM05D000166 ORTHO05D005603 7.6e-06 53.9 49 49.0
Glyma.07G213900 Glycine max HOM05D000166 ORTHO05D005603 7.6e-06 53.9 49 49.0
Lj4g0011902 Lotus japonicus HOM05D000166 ORTHO05D005603 7.6e-06 53.9 49 49.0
Medtr4g085810 Medicago truncatula HOM05D000166 ORTHO05D005603 7.6e-06 53.9 49 49.0
VMungo0251G2354 Vigna mungo HOM05D000166 ORTHO05D005603 7.6e-06 53.9 49 49.0
Glyma.02G102600 Glycine max HOM05D000166 ORTHO05D005603 9.9e-06 53.5 49 49.0
Phvul.003G027600 Phaseolus vulgaris HOM05D000166 ORTHO05D005603 9.9e-06 53.5 49 46.9


User provided reference genes

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