Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g051235 Medicago truncatula HOM05D008036 ORTHO05D008317 2.2e-91 339.0 173 100.0
Medtr1g105785 Medicago truncatula HOM05D008036 ORTHO05D000174 1.1e-63 246.9 172 70.3
Medtr7g051400 Medicago truncatula HOM05D008036 ORTHO05D000174 7.6e-60 234.2 172 68.6
Medtr7g110100 Medicago truncatula HOM05D008036 ORTHO05D000174 4.2e-50 201.8 172 58.7
Medtr8g465040 Medicago truncatula HOM05D008036 ORTHO05D000174 2.7e-49 199.1 173 59.0
Medtr3g452170 Medicago truncatula HOM05D008036 ORTHO05D000174 4.6e-49 198.4 172 57.0
Medtr4g017450 Medicago truncatula HOM05D008036 ORTHO05D000174 6.1e-41 171.4 138 60.1
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 1.9e-34 149.8 167 44.3
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 1.9e-34 149.8 168 44.0
TPR.G9555 Trifolium pratense HOM05D000096 ORTHO05D000045 2.5e-34 149.4 168 44.0
Medtr6g465570 Medicago truncatula HOM05D008036 ORTHO05D008317 3.6e-33 145.6 168 43.5
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 8.8e-32 141.0 168 42.9
Medtr5g080500 Medicago truncatula HOM05D008036 ORTHO05D000174 2.6e-31 139.4 92 76.1
Medtr6g073570 Medicago truncatula HOM05D008036 ORTHO05D000174 1.7e-30 136.7 172 43.6
Medtr7g045450 Medicago truncatula HOM05D008036 ORTHO05D000174 1.7e-30 136.7 172 43.6
Medtr7g451880 Medicago truncatula HOM05D008036 ORTHO05D000174 1.1e-29 134.0 167 42.5
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 4.1e-29 132.1 169 40.8
Medtr8g005940 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-29 131.3 172 41.9
Medtr4g058660 Medicago truncatula HOM05D008036 ORTHO05D000174 9.1e-29 131.0 167 41.9
Medtr7g074180 Medicago truncatula HOM05D008036 ORTHO05D000174 1.2e-28 130.6 172 41.3
Medtr1g023370 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-28 129.8 172 41.3
Medtr2g005490 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-28 129.8 172 41.3
Medtr2g010570 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-28 129.8 172 41.3
Medtr3g031190 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-28 129.8 172 41.3
Medtr5g056290 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-28 129.8 172 41.3
Medtr5g081190 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-28 129.8 172 41.3
Medtr5g091480 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-28 129.8 172 41.3
Medtr6g087820 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-28 129.8 172 41.3
Medtr7g024060 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-28 129.8 172 41.3
Medtr2g007410 Medicago truncatula HOM05D008036 ORTHO05D000174 5.9e-28 128.3 172 40.7
Medtr3g015660 Medicago truncatula HOM05D008036 ORTHO05D000174 5.9e-28 128.3 172 40.7
Medtr5g030110 Medicago truncatula HOM05D008036 ORTHO05D000174 5.9e-28 128.3 172 40.7
Medtr7g051840 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-27 127.5 130 52.3
Medtr2g010270 Medicago truncatula HOM05D008036 ORTHO05D000174 4.7e-25 118.6 160 39.4
Medtr8g446640 Medicago truncatula HOM05D008036 ORTHO05D000174 6.1e-25 118.2 151 42.4
Medtr1g011490 Medicago truncatula HOM05D008036 ORTHO05D000174 8.8e-24 114.4 172 38.4
Medtr1g082860 Medicago truncatula HOM05D008036 ORTHO05D000174 8.8e-24 114.4 172 38.4
TPR.G13367 Trifolium pratense HOM05D008036 ORTHO05D000174 1.5e-23 113.6 167 39.5
Medtr1g052715 Medicago truncatula HOM05D008036 ORTHO05D000174 4.4e-23 112.1 132 43.2
Medtr5g045850 Medicago truncatula HOM05D008036 ORTHO05D000174 1.3e-22 110.5 172 39.0
TPR.G37330 Trifolium pratense HOM05D008036 ORTHO05D008317 1.0e-19 100.9 138 37.0
Medtr5g019960 Medicago truncatula HOM05D008036 ORTHO05D000174 1.1e-18 97.4 130 37.7
TPR.G25065 Trifolium pratense HOM05D008036 ORTHO05D000174 1.1e-18 97.4 111 45.0
Medtr7g039300 Medicago truncatula HOM05D008036 ORTHO05D000174 1.9e-18 96.7 177 35.6
TPR.G20009 Trifolium pratense HOM05D008036 ORTHO05D000174 3.2e-18 95.9 114 46.5
Medtr7g070110 Medicago truncatula HOM05D008036 ORTHO05D000174 2.1e-17 93.2 114 43.9
TPR.G9984 Trifolium pratense HOM05D005770 ORTHO05D006702 2.1e-17 93.2 159 35.2
EL10Ac7g16273 Beta vulgaris HOM05D000353 ORTHO05D000174 1.2e-15 87.4 154 33.8
Medtr1g110330 Medicago truncatula HOM05D008036 ORTHO05D000174 3.7e-14 82.4 135 36.3
Nitab4.5_0000083g0280 Nicotiana tabacum HOM05D002441 ORTHO05D008317 6.3e-14 81.6 156 30.1
arahy.Tifrunner.gnm1.ann1.U14C6K Arachis hypogaea HOM05D008664 ORTHO05D000174 1.4e-13 80.5 163 31.9
Nitab4.5_0000534g0030 Nicotiana tabacum HOM05D002441 ORTHO05D008317 4.1e-13 79.0 174 27.0
Medtr0105s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 7.0e-13 78.2 151 33.8
arahy.Tifrunner.gnm1.ann1.7R55CH Arachis hypogaea HOM05D008664 ORTHO05D000174 9.1e-13 77.8 155 31.0
arahy.Tifrunner.gnm1.ann1.VX4W4R Arachis hypogaea HOM05D008664 ORTHO05D000174 9.1e-13 77.8 155 31.6
arahy.Tifrunner.gnm1.ann1.AJVM0N Arachis hypogaea HOM05D008664 ORTHO05D000174 1.2e-12 77.4 155 31.0
TPR.G402 Trifolium pratense HOM05D008036 ORTHO05D000174 1.2e-12 77.4 86 48.8
Ah.06g192340 Amaranthus hybridus HOM05D003062 ORTHO05D003468 1.6e-12 77.0 154 31.2
arahy.Tifrunner.gnm1.ann1.7L6ESV Arachis hypogaea HOM05D008664 ORTHO05D000174 1.6e-12 77.0 155 31.0
TPR.G40259 Trifolium pratense HOM05D008036 ORTHO05D000174 1.6e-12 77.0 83 50.6
arahy.Tifrunner.gnm1.ann1.64IA1E Arachis hypogaea HOM05D008664 ORTHO05D000174 2.0e-12 76.6 156 31.4
Nitab4.5_0000970g0060 Nicotiana tabacum HOM05D002441 ORTHO05D002376 2.0e-12 76.6 164 29.9
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.7e-12 76.3 167 29.3
arahy.Tifrunner.gnm1.ann1.AKH4BK Arachis hypogaea HOM05D000353 ORTHO05D000174 3.5e-12 75.9 143 33.6
arahy.Tifrunner.gnm1.ann1.CPRZ31 Arachis hypogaea HOM05D000353 ORTHO05D000174 3.5e-12 75.9 143 33.6
arahy.Tifrunner.gnm1.ann1.IYP2GG Arachis hypogaea HOM05D000353 ORTHO05D000174 3.5e-12 75.9 143 33.6
arahy.Tifrunner.gnm1.ann1.J9NJUF Arachis hypogaea HOM05D000353 ORTHO05D000174 3.5e-12 75.9 143 33.6
arahy.Tifrunner.gnm1.ann1.LSFF47 Arachis hypogaea HOM05D000353 ORTHO05D000174 3.5e-12 75.9 143 33.6
arahy.Tifrunner.gnm1.ann1.Y6YSHD Arachis hypogaea HOM05D000353 ORTHO05D000174 3.5e-12 75.9 143 33.6
Nitab4.5_0009595g0020 Nicotiana tabacum HOM05D002441 ORTHO05D008317 3.5e-12 75.9 156 28.2
arahy.Tifrunner.gnm1.ann1.0VM956 Arachis hypogaea HOM05D008664 ORTHO05D000174 4.5e-12 75.5 155 31.0
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 4.5e-12 75.5 168 28.6
Lj6g0015688 Lotus japonicus HOM05D007499 ORTHO05D000174 4.5e-12 75.5 157 29.9
Medtr7g096440 Medicago truncatula HOM05D000096 ORTHO05D000045 4.5e-12 75.5 122 37.7
Glyma.08G241650 Glycine max HOM05D008036 ORTHO05D000174 5.9e-12 75.1 123 37.4
arahy.Tifrunner.gnm1.ann1.02KJQT Arachis hypogaea HOM05D008664 ORTHO05D000174 1.0e-11 74.3 152 30.9
Nitab4.5_0008875g0020 Nicotiana tabacum HOM05D002441 ORTHO05D008317 1.3e-11 73.9 161 29.8
Medtr3g036220 Medicago truncatula HOM05D008036 ORTHO05D000174 2.2e-11 73.2 172 32.6
Medtr5g012180 Medicago truncatula HOM05D008036 ORTHO05D000174 2.2e-11 73.2 172 32.6
Medtr5g071020 Medicago truncatula HOM05D008036 ORTHO05D000174 2.2e-11 73.2 172 32.6
Medtr5g078250 Medicago truncatula HOM05D000353 ORTHO05D000174 2.9e-11 72.8 175 28.0
Medtr8g062030 Medicago truncatula HOM05D000353 ORTHO05D000174 2.9e-11 72.8 166 28.3
LjContig00141g0027033 Lotus japonicus HOM05D007499 ORTHO05D000174 3.8e-11 72.4 167 28.1
TPR.G23697 Trifolium pratense HOM05D008036 ORTHO05D008317 3.8e-11 72.4 97 37.1
LjContig00141g0005393 Lotus japonicus HOM05D000353 ORTHO05D000174 6.5e-11 71.6 120 33.3
Medtr3g056240 Medicago truncatula HOM05D000353 ORTHO05D000174 6.5e-11 71.6 170 30.6
Medtr3g056270 Medicago truncatula HOM05D000353 ORTHO05D000174 6.5e-11 71.6 170 30.6
Medtr4g036240 Medicago truncatula HOM05D000353 ORTHO05D000174 6.5e-11 71.6 170 30.0
Lj1g0003435 Lotus japonicus HOM05D007499 ORTHO05D000174 8.5e-11 71.2 146 28.8
Nitab4.5_0007533g0040 Nicotiana tabacum HOM05D002441 ORTHO05D008317 1.5e-10 70.5 153 28.8
AL1G48730 Arabidopsis lyrata HOM05D000353 ORTHO05D031316 3.2e-10 69.3 169 30.2
LjContig00081g0005726 Lotus japonicus HOM05D007499 ORTHO05D000174 7.2e-10 68.2 167 26.9
Medtr8g024070 Medicago truncatula HOM05D008036 ORTHO05D000174 7.2e-10 68.2 83 43.4
Lj3g0013581 Lotus japonicus HOM05D007499 ORTHO05D000174 9.4e-10 67.8 164 26.8
Medtr2g048560 Medicago truncatula HOM05D000353 ORTHO05D000174 1.2e-09 67.4 173 29.5
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 2.1e-09 66.6 129 31.0
arahy.Tifrunner.gnm1.ann1.GSMT98 Arachis hypogaea HOM05D008664 ORTHO05D000174 2.7e-09 66.2 110 37.3
Lsat_1_v5_gn_6_53641 Lactuca sativa HOM05D009063 ORTHO05D011082 2.7e-09 66.2 165 28.5
Medtr3g046650 Medicago truncatula HOM05D008036 ORTHO05D025835 2.7e-09 66.2 122 37.7
Nitab4.5_0006891g0010 Nicotiana tabacum HOM05D002441 ORTHO05D008317 2.7e-09 66.2 172 29.7
AL7G20110 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 3.6e-09 65.9 169 29.6
arahy.Tifrunner.gnm1.ann1.A988JE Arachis hypogaea HOM05D002441 ORTHO05D002376 3.6e-09 65.9 167 25.7
arahy.Tifrunner.gnm1.ann1.5G8KYG Arachis hypogaea HOM05D000353 ORTHO05D000174 4.7e-09 65.5 164 26.8
arahy.Tifrunner.gnm1.ann1.JMQ4U7 Arachis hypogaea HOM05D008664 ORTHO05D000174 4.7e-09 65.5 124 32.3
HanXRQChr15g0464461 Helianthus annuus HOM05D003964 ORTHO05D000174 4.7e-09 65.5 154 28.6
Medtr3g007260 Medicago truncatula HOM05D008036 ORTHO05D000174 4.7e-09 65.5 120 32.5
arahy.Tifrunner.gnm1.ann1.GIN4EI Arachis hypogaea HOM05D000353 ORTHO05D000174 6.1e-09 65.1 152 27.6
arahy.Tifrunner.gnm1.ann1.A8IEE6 Arachis hypogaea HOM05D000353 ORTHO05D000174 8.0e-09 64.7 152 27.6
arahy.Tifrunner.gnm1.ann1.RS3EFR Arachis hypogaea HOM05D000353 ORTHO05D000174 8.0e-09 64.7 152 27.6
Nitab4.5_0001129g0140 Nicotiana tabacum HOM05D002441 ORTHO05D008317 1.4e-08 63.9 119 31.1
arahy.Tifrunner.gnm1.ann1.GB31PP Arachis hypogaea HOM05D002441 ORTHO05D008317 2.3e-08 63.2 156 23.7
arahy.Tifrunner.gnm1.ann1.HXT0UR Arachis hypogaea HOM05D000353 ORTHO05D000174 2.3e-08 63.2 152 27.0
BcaB07g32743 Brassica carinata HOM05D000353 ORTHO05D000174 3.0e-08 62.8 150 28.7
ECA246G4325 Erigeron canadensis HOM05D000353 ORTHO05D000174 3.0e-08 62.8 134 32.1
Medtr8g059025 Medicago truncatula HOM05D000353 ORTHO05D000174 3.0e-08 62.8 140 30.7
arahy.Tifrunner.gnm1.ann1.E8Q8VF Arachis hypogaea HOM05D008664 ORTHO05D000174 4.0e-08 62.4 117 30.8
EL10Ac1g00284 Beta vulgaris HOM05D000353 ORTHO05D000174 4.0e-08 62.4 131 32.1
ECA238G1832 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.0e-08 62.4 153 30.1
Medtr8g467450 Medicago truncatula HOM05D000353 ORTHO05D008317 4.0e-08 62.4 120 29.2
Medtr2g008650 Medicago truncatula HOM05D000353 ORTHO05D000174 5.2e-08 62.0 150 28.0
Medtr8g479260 Medicago truncatula HOM05D000353 ORTHO05D000174 5.2e-08 62.0 150 28.0
Nitab4.5_0003780g0040 Nicotiana tabacum HOM05D002441 ORTHO05D008317 5.2e-08 62.0 117 31.6
SGA_v2.0_scaffold9G04715 Striga asiatica HOM05D008036 ORTHO05D000174 5.2e-08 62.0 122 27.0
TPR.G7703 Trifolium pratense HOM05D000353 ORTHO05D000174 5.2e-08 62.0 107 32.7
Lj6g0008830 Lotus japonicus HOM05D000353 ORTHO05D000174 6.8e-08 61.6 101 32.7
BcaB01g05982 Brassica carinata HOM05D000353 ORTHO05D000174 1.5e-07 60.5 153 30.1
ECA233G3201 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.5e-07 60.5 154 27.3
Nitab4.5_0005875g0070 Nicotiana tabacum HOM05D000096 ORTHO05D008317 1.5e-07 60.5 157 23.6
ECA236G0169 Erigeron canadensis HOM05D000353 ORTHO05D000174 2.0e-07 60.1 128 31.2
Medtr2g054710 Medicago truncatula HOM05D000353 ORTHO05D000174 2.6e-07 59.7 150 27.3
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 2.6e-07 59.7 158 30.4
Nitab4.5_0020633g0010 Nicotiana tabacum HOM05D002441 ORTHO05D008317 2.6e-07 59.7 82 35.4
Lj5g0012270 Lotus japonicus HOM05D007499 ORTHO05D000174 3.4e-07 59.3 145 27.6
arahy.Tifrunner.gnm1.ann1.NFD50Z Arachis hypogaea HOM05D000353 ORTHO05D000174 4.4e-07 58.9 152 25.0
HanXRQChr05g0158841 Helianthus annuus HOM05D000353 ORTHO05D000174 4.4e-07 58.9 155 27.7
Medtr1g101230 Medicago truncatula HOM05D000096 ORTHO05D000045 4.4e-07 58.9 86 38.4
Medtr6g069460 Medicago truncatula HOM05D008036 ORTHO05D000174 4.4e-07 58.9 77 40.3
Nitab4.5_0005864g0030 Nicotiana tabacum HOM05D002441 ORTHO05D008317 4.4e-07 58.9 121 27.3
C07p10990 Brassica napus HOM05D000353 ORTHO05D000174 5.7e-07 58.5 155 29.7
Nitab4.5_0008637g0040 Nicotiana tabacum HOM05D002441 ORTHO05D008317 5.7e-07 58.5 86 33.7
HanXRQChr13g0403861 Helianthus annuus HOM05D003964 ORTHO05D000174 7.5e-07 58.2 157 25.5
HanXRQChr14g0436911 Helianthus annuus HOM05D003964 ORTHO05D000174 7.5e-07 58.2 157 25.5
Nitab4.5_0014003g0010 Nicotiana tabacum HOM05D002441 ORTHO05D008317 7.5e-07 58.2 121 28.1
Medtr1g075850 Medicago truncatula HOM05D000353 ORTHO05D000174 9.8e-07 57.8 165 25.5
Nitab4.5_0002975g0060 Nicotiana tabacum HOM05D002441 ORTHO05D008317 9.8e-07 57.8 82 35.4
BolC7t41563H Brassica oleracea HOM05D009574 ORTHO05D000174 1.3e-06 57.4 155 29.7
HanXRQChr07g0205571 Helianthus annuus HOM05D003964 ORTHO05D000174 1.3e-06 57.4 161 28.0
Nitab4.5_0008694g0040 Nicotiana tabacum HOM05D000193 ORTHO05D008317 1.3e-06 57.4 153 23.5
Nitab4.5_0013233g0010 Nicotiana tabacum HOM05D002441 ORTHO05D008317 1.3e-06 57.4 87 33.3
QL10p011037 Quercus lobata HOM05D002907 ORTHO05D000065 1.3e-06 57.4 154 27.9
arahy.Tifrunner.gnm1.ann1.HMM5RD Arachis hypogaea HOM05D000353 ORTHO05D000174 1.7e-06 57.0 160 23.1
ECA232G2690 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.7e-06 57.0 131 26.7
Psat6g240360 Pisum sativum HOM05D002090 ORTHO05D001923 1.7e-06 57.0 141 29.1
C05p29470 Brassica napus HOM05D009574 ORTHO05D000174 3.7e-06 55.8 143 30.8
BolC5t31677H Brassica oleracea HOM05D009574 ORTHO05D000174 3.7e-06 55.8 143 30.8
ECA233G1973 Erigeron canadensis HOM05D000353 ORTHO05D000174 3.7e-06 55.8 128 28.1
Medtr4g025750 Medicago truncatula HOM05D006491 ORTHO05D008317 3.7e-06 55.8 64 40.6
AT2G05642 Arabidopsis thaliana HOM05D000353 ORTHO05D000174 4.9e-06 55.5 166 24.7
ECA248G2434 Erigeron canadensis HOM05D000353 ORTHO05D000174 4.9e-06 55.5 113 31.0
Lj3g0021994 Lotus japonicus HOM05D002090 ORTHO05D001923 4.9e-06 55.5 94 34.0
arahy.Tifrunner.gnm1.ann1.40YIIT Arachis hypogaea HOM05D008664 ORTHO05D000174 6.3e-06 55.1 88 36.4
C02p33390 Brassica napus HOM05D000353 ORTHO05D015401 6.3e-06 55.1 166 27.7
ECA238G3619 Erigeron canadensis HOM05D000353 ORTHO05D000174 6.3e-06 55.1 103 31.1
Lalb_Chr13g0293801 Lupinus albus HOM05D002090 ORTHO05D001923 8.3e-06 54.7 125 29.6


User provided reference genes

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