Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 2.2e-93 345.5 165 100.0
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.8e-58 229.6 169 74.0
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.9e-56 222.2 163 72.4
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 2.7e-54 215.7 223 52.9
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.1e-51 206.1 138 76.8
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 3.3e-44 182.2 173 57.8
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 3.1e-42 175.6 170 55.3
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 5.2e-42 174.9 170 54.1
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.5e-41 173.3 166 59.6
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 9.6e-36 154.1 203 48.8
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.6e-35 152.1 196 48.0
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 5.2e-34 148.3 195 47.2
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.2e-33 147.1 196 47.4
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 1.5e-33 146.7 202 44.6
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 2.0e-33 146.4 198 47.0
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 2.0e-33 146.4 181 48.6
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 5.8e-33 144.8 205 43.9
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 5.8e-33 144.8 190 47.4
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.3e-32 143.7 172 50.0
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.3e-32 143.7 172 50.0
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 1.3e-32 143.7 217 42.9
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 8.4e-32 141.0 180 47.8
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.9e-31 139.8 137 55.5
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 4.2e-31 138.7 195 43.1
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 5.4e-31 138.3 127 55.1
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 7.1e-31 137.9 195 43.6
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 7.1e-31 137.9 159 50.3
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 9.3e-31 137.5 185 44.3
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.2e-30 137.1 155 50.3
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.2e-30 137.1 196 42.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 1.6e-30 136.7 201 43.8
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.6e-30 136.7 195 44.6
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.7e-30 136.0 198 41.4
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.7e-30 136.0 193 44.6
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 3.5e-30 135.6 84 72.6
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.6e-30 135.2 167 46.1
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 4.6e-30 135.2 125 57.6
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 4.6e-30 135.2 194 42.8
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.8e-30 134.4 154 49.4
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 7.8e-30 134.4 174 50.0
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.3e-29 133.7 126 56.3
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 2.3e-29 132.9 197 43.1
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 2.3e-29 132.9 208 41.3
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 6.6e-29 131.3 179 45.3
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.1e-28 130.6 211 39.8
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.5e-28 130.2 125 56.8
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.5e-28 130.2 122 54.9
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.5e-28 130.2 202 45.0
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.5e-28 129.4 198 43.4
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.3e-28 128.6 180 43.9
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 4.3e-28 128.6 201 43.8
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 5.6e-28 128.3 169 45.6
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 9.6e-28 127.5 174 46.6
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 9.6e-28 127.5 84 67.9
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 9.6e-28 127.5 179 44.7
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 9.6e-28 127.5 178 45.5
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.6e-27 126.7 184 46.7
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.1e-27 126.3 155 48.4
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 6.2e-27 124.8 173 42.8
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 6.2e-27 124.8 132 51.5
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 6.2e-27 124.8 135 52.6
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 8.1e-27 124.4 127 54.3
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.1e-26 124.0 194 41.8
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.4e-26 123.6 162 48.8
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.4e-26 123.6 125 52.8
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.8e-26 123.2 118 54.2
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.4e-26 122.9 210 40.0
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 6.9e-26 121.3 131 51.9
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 6.9e-26 121.3 131 51.9
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 6.9e-26 121.3 128 52.3
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 9.0e-26 120.9 127 48.8
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 9.0e-26 120.9 133 53.4
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.5e-25 120.2 136 50.7
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 2.0e-25 119.8 150 48.0
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 2.6e-25 119.4 84 64.3
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 7.6e-25 117.9 165 41.2
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 9.9e-25 117.5 185 40.0
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-24 117.1 117 55.6
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.3e-24 117.1 171 40.9
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.2e-24 116.3 84 66.7
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 2.9e-24 115.9 84 61.9
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.9e-24 115.9 117 54.7
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 3.8e-24 115.5 121 53.7
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.4e-24 114.8 142 47.2
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.4e-24 114.8 142 47.2
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 6.4e-24 114.8 133 51.1
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.4e-24 114.8 117 53.8
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.1e-23 114.0 187 42.2
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 7.1e-23 111.3 84 61.9
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 7.1e-23 111.3 84 61.9
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.3e-23 110.9 117 53.0
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 1.2e-22 110.5 117 53.8
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.6e-22 110.2 84 61.9
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.6e-22 110.2 145 48.3
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.6e-22 110.2 135 50.4
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.1e-22 109.8 116 52.6
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 2.1e-22 109.8 162 43.2
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.1e-22 109.8 145 48.3
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.7e-22 109.4 116 53.4
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.7e-22 109.4 116 53.4
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 3.5e-22 109.0 150 42.7
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.5e-22 109.0 107 58.9
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 3.5e-22 109.0 84 59.5
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 6.0e-22 108.2 131 46.6
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.0e-22 108.2 116 53.4
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 7.9e-22 107.8 152 44.7
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 7.9e-22 107.8 84 60.7
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 7.9e-22 107.8 141 45.4
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.8e-21 106.7 84 60.7
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.8e-21 106.7 84 60.7
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 3.0e-21 105.9 122 49.2
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.9e-21 105.5 173 42.2
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.9e-21 105.5 114 50.0
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 8.7e-21 104.4 169 42.6
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.3e-20 102.4 130 49.2
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.3e-19 100.5 197 39.6
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.3e-19 100.5 193 39.4
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 2.8e-19 99.4 140 43.6
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 3.6e-19 99.0 180 41.7
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 4.8e-19 98.6 144 44.4
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 6.2e-19 98.2 138 45.7
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.8e-18 96.7 128 46.1
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 3.1e-18 95.9 143 42.7
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 3.1e-18 95.9 126 45.2
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 4.0e-18 95.5 127 44.9
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-17 94.0 84 56.0
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.2e-17 94.0 84 56.0
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.2e-17 94.0 133 46.6
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.5e-17 93.6 134 41.8
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 2.0e-17 93.2 84 56.0
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 2.0e-17 93.2 84 56.0
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 5.8e-17 91.7 134 43.3
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.7e-16 90.1 145 42.8
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 4.9e-16 88.6 123 44.7
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 8.4e-16 87.8 84 53.6
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.4e-15 87.0 128 46.1
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.4e-15 87.0 82 45.1
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 2.4e-15 86.3 84 52.4
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 4.2e-15 85.5 84 52.4
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 4.2e-15 85.5 84 52.4
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 5.5e-15 85.1 48 77.1
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 7.1e-15 84.7 128 43.8
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 9.3e-15 84.3 128 42.2
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 9.3e-15 84.3 128 42.2
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-14 84.0 129 41.9
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 1.2e-14 84.0 129 41.9
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 2.1e-14 83.2 129 41.9
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 2.1e-14 83.2 129 41.9
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.7e-14 82.8 120 39.2
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 3.5e-14 82.4 84 51.2
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 3.5e-14 82.4 130 40.8
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 6.0e-14 81.6 194 34.0
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.0e-13 80.9 75 50.7
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.8e-13 80.1 125 42.4
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 6.7e-13 78.2 86 51.2
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.8e-10 70.1 63 52.4
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 3.1e-10 69.3 156 39.1
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 1.2e-09 67.4 172 34.3
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.6e-09 66.2 126 39.7
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 2.6e-09 66.2 123 42.3
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 7.6e-09 64.7 123 38.2
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 1.0e-08 64.3 173 27.7
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 1.3e-08 63.9 101 39.6
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 2.2e-08 63.2 175 34.3
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 4.9e-08 62.0 126 38.1
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 4.9e-08 62.0 179 27.9
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 4.9e-08 62.0 179 27.9
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 1.1e-07 60.8 170 31.8
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 1.4e-07 60.5 173 32.4
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 4.2e-07 58.9 141 37.6
BolC7t44160H Brassica oleracea HOM05D013829 ORTHO05D015952 1.6e-06 57.0 180 26.7


User provided reference genes

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