Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 1.8e-145 519.2 269 100.0
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 3.4e-91 339.0 266 74.1
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 1.9e-81 306.6 266 68.8
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 4.6e-72 275.4 280 60.4
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 3.4e-67 259.2 250 64.4
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 7.7e-67 258.1 207 70.0
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 7.2e-65 251.5 283 56.9
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 1.7e-61 240.4 253 59.3
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 6.3e-61 238.4 231 62.8
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 1.4e-57 227.3 203 63.5
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 5.3e-44 182.2 161 62.1
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 4.5e-43 179.1 259 48.3
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 7.7e-43 178.3 278 47.1
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 1.0e-42 177.9 281 45.6
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 2.2e-42 176.8 156 63.5
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 5.0e-42 175.6 166 60.2
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 6.5e-42 175.3 242 49.6
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 1.1e-41 174.5 290 44.1
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 1.1e-41 174.5 262 46.2
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.1e-41 174.5 278 46.0
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.2e-40 171.0 281 45.9
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 8.8e-39 164.9 295 42.0
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.2e-38 164.5 282 45.0
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 2.0e-38 163.7 286 46.2
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 5.7e-38 162.2 267 45.7
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 7.5e-38 161.8 309 40.1
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 7.5e-38 161.8 282 44.3
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 9.8e-38 161.4 307 40.1
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 9.8e-38 161.4 307 40.1
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 1.3e-37 161.0 199 52.3
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.2e-37 160.2 307 40.1
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 2.2e-37 160.2 268 43.3
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.8e-37 159.8 305 39.7
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 2.8e-37 159.8 253 46.6
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 4.8e-37 159.1 284 41.5
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 4.8e-37 159.1 286 42.3
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 6.3e-37 158.7 237 44.7
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 6.3e-37 158.7 259 44.0
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 1.1e-36 157.9 264 43.6
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 2.4e-36 156.8 257 43.6
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 3.1e-36 156.4 290 39.7
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 5.4e-36 155.6 251 44.2
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 9.1e-36 154.8 280 43.9
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 1.6e-35 154.1 244 45.9
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 1.6e-35 154.1 254 46.1
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 2.0e-35 153.7 271 40.6
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 2.7e-35 153.3 165 56.4
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 2.7e-35 153.3 248 44.8
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 2.7e-35 153.3 287 40.8
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 4.5e-35 152.5 162 56.8
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 1.0e-34 151.4 250 45.2
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 2.3e-34 150.2 168 56.0
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 3.8e-34 149.4 297 40.7
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 3.8e-34 149.4 260 43.1
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 3.8e-34 149.4 160 55.6
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 1.1e-33 147.9 245 42.4
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 1.5e-33 147.5 229 43.7
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 1.9e-33 147.1 259 44.4
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 4.2e-33 146.0 193 48.2
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 5.5e-33 145.6 282 39.4
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 5.5e-33 145.6 282 39.4
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 9.5e-33 144.8 253 41.5
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 1.2e-32 144.4 302 37.4
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 1.6e-32 144.1 262 39.7
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 2.1e-32 143.7 290 39.0
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 2.1e-32 143.7 137 59.1
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 6.1e-32 142.1 165 53.9
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 3.0e-31 139.8 295 39.0
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 3.0e-31 139.8 295 39.0
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 3.0e-31 139.8 295 39.0
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 3.0e-31 139.8 293 41.0
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 4.0e-31 139.4 152 55.9
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 5.2e-31 139.0 166 51.8
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 8.8e-31 138.3 189 47.1
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 2.0e-30 137.1 133 60.9
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 7.5e-30 135.2 170 50.6
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.7e-29 134.0 166 53.6
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 2.8e-29 133.3 153 54.9
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 3.7e-29 132.9 116 66.4
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 4.9e-29 132.5 284 38.4
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 6.3e-29 132.1 166 53.0
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 1.2e-27 127.9 229 42.4
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 2.0e-27 127.1 270 38.5
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 3.5e-27 126.3 297 37.0
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 4.5e-27 125.9 252 38.5
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 7.8e-27 125.2 251 39.4
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 3.8e-26 122.9 279 35.1
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 1.5e-25 120.9 153 51.0
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 1.9e-25 120.6 293 38.2
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 3.3e-25 119.8 136 57.4
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 2.1e-24 117.1 233 39.9
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 3.6e-24 116.3 197 44.7
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 4.7e-24 115.9 94 67.0
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 1.0e-23 114.8 81 75.3
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 3.0e-23 113.2 157 49.0
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 5.2e-23 112.5 127 52.8
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 4.4e-22 109.4 202 42.1
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 4.4e-22 109.4 269 36.4
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 5.7e-22 109.0 189 42.9
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 5.7e-22 109.0 183 46.4
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 2.2e-21 107.1 302 34.1
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 6.4e-21 105.5 153 45.8
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 8.3e-21 105.1 180 42.8
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 8.3e-21 105.1 157 43.9
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 2.4e-20 103.6 307 33.9
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 3.2e-20 103.2 118 53.4
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 1.2e-19 101.3 218 36.7
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 1.6e-19 100.9 310 34.8
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 3.5e-19 99.8 251 36.3
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 4.6e-19 99.4 193 38.9
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 4.6e-19 99.4 103 54.4
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 3.9e-18 96.3 151 44.4
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 1.5e-17 94.4 227 37.4
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 2.5e-17 93.6 248 34.3
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 2.8e-16 90.1 85 62.4
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.8e-15 87.4 61 68.9
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 7.5e-14 82.0 152 38.8
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.4e-12 77.8 50 74.0
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 1.0e-10 71.6 61 60.7
AUR62033078 Chenopodium quinoa HOM05D000408 ORTHO05D001664 1.5e-06 57.8 50 64.0


User provided reference genes

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