Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 3.3e-109 398.3 189 100.0
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 1.2e-106 389.8 189 97.9
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 7.5e-93 344.0 192 87.0
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 4.8e-92 341.3 192 85.9
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 6.1e-87 324.3 193 82.4
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 1.7e-81 306.2 196 74.0
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 2.3e-81 305.8 197 75.1
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.6e-79 299.7 198 72.7
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 2.1e-79 299.3 196 73.0
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 1.7e-76 289.7 196 70.9
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 2.2e-76 289.3 213 67.6
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 7.8e-74 280.8 190 72.1
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 5.2e-70 268.1 195 66.2
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 6.8e-70 267.7 195 66.7
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 3.7e-68 261.9 194 64.9
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 4.1e-67 258.5 193 66.8
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 5.4e-67 258.1 161 81.4
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 9.2e-67 257.3 198 62.1
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.7e-66 255.8 195 63.1
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 3.5e-66 255.4 195 62.6
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.3e-65 253.4 191 64.4
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.7e-65 253.1 194 61.9
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 3.9e-65 251.9 195 62.1
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.0e-65 251.5 195 64.1
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 6.6e-65 251.1 180 66.1
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 8.6e-65 250.8 193 62.7
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 3.3e-64 248.8 193 62.7
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 3.3e-64 248.8 200 60.0
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 5.6e-64 248.1 189 62.4
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 7.3e-64 247.7 267 50.2
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 7.3e-64 247.7 192 61.5
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 9.5e-64 247.3 211 58.8
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 9.5e-64 247.3 189 61.9
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 1.2e-63 246.9 193 62.2
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 1.2e-63 246.9 186 64.5
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.6e-63 246.5 196 59.2
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 2.1e-63 246.1 190 61.1
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 2.8e-63 245.7 181 65.2
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.8e-63 245.7 181 65.7
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 3.6e-63 245.4 206 57.3
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 4.7e-63 245.0 183 64.5
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 4.7e-63 245.0 186 63.4
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 6.2e-63 244.6 193 58.5
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.0e-63 244.2 181 65.7
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.0e-63 244.2 181 65.7
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 1.1e-62 243.8 195 61.5
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 5.2e-62 241.5 189 61.9
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 5.2e-62 241.5 195 61.0
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 5.2e-62 241.5 193 61.7
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 1.2e-61 240.4 186 63.4
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.2e-61 240.4 185 63.2
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 1.2e-61 240.4 208 59.6
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.5e-61 240.0 188 61.2
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.5e-61 240.0 200 60.5
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 2.0e-61 239.6 187 61.0
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.6e-61 239.2 185 62.7
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 3.4e-61 238.8 188 61.7
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 5.8e-61 238.0 198 60.6
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 5.8e-61 238.0 185 62.2
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 1.3e-60 236.9 181 63.5
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 1.3e-60 236.9 195 60.0
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 4.9e-60 235.0 195 59.0
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 2.4e-59 232.6 187 59.9
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 2.4e-59 232.6 124 81.5
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 3.2e-59 232.3 196 56.6
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 3.2e-59 232.3 193 59.1
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 5.4e-59 231.5 202 56.4
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 2.1e-58 229.6 131 74.8
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.7e-58 229.2 180 61.1
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 2.7e-58 229.2 180 61.1
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 2.7e-58 229.2 161 73.3
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 2.7e-58 229.2 121 83.5
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 7.8e-58 227.6 154 74.7
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 1.3e-57 226.9 195 57.4
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.3e-57 226.9 125 79.2
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.3e-57 226.9 125 79.2
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 1.7e-57 226.5 126 79.4
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 1.7e-57 226.5 123 78.9
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 2.3e-57 226.1 189 56.6
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 6.6e-57 224.6 193 56.5
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 6.6e-57 224.6 123 79.7
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 6.6e-57 224.6 185 59.5
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 6.6e-57 224.6 179 59.8
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 4.3e-56 221.9 186 53.8
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.6e-55 218.8 191 58.6
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 3.1e-54 215.7 188 55.9
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 4.0e-54 215.3 119 78.2
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 2.0e-53 213.0 177 60.5
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 5.8e-53 211.5 200 56.0
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 9.9e-53 210.7 169 56.8
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 8.3e-52 207.6 254 45.7
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.4e-51 204.9 132 67.4
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.4e-51 204.9 132 67.4
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.6e-50 203.4 192 53.6
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 7.8e-50 201.1 164 59.1
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 7.8e-50 201.1 197 54.8
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.3e-49 200.3 119 68.9
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 5.1e-49 198.4 125 74.4
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 1.9e-48 196.4 157 63.1
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 4.3e-48 195.3 224 43.3
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 2.8e-47 192.6 116 71.6
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.1e-46 190.7 129 65.9
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 2.2e-44 183.0 253 41.9
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 4.9e-44 181.8 126 61.1
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 5.4e-43 178.3 100 78.0
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 8.7e-41 171.0 113 59.3
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 3.3e-40 169.1 128 63.3
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 4.3e-40 168.7 148 48.6
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.8e-39 166.0 146 52.1
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 8.1e-39 164.5 185 45.4
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 1.5e-37 160.2 170 51.8
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 3.5e-34 149.1 129 59.7
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.1e-33 145.2 201 39.8
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 2.8e-31 139.4 63 100.0
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.8e-31 138.7 122 59.0
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.4e-30 136.3 102 53.9
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 5.3e-30 135.2 120 60.8
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 1.5e-29 133.7 91 76.9
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 2.0e-29 133.3 138 44.2
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.9e-27 126.7 156 48.1
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 2.1e-26 123.2 100 45.0
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 3.9e-25 119.0 97 55.7
Medtr8g045467 Medicago truncatula HOM05D005520 ORTHO05D006633 3.9e-25 119.0 60 96.7
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 5.1e-25 118.6 96 53.1
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 8.7e-25 117.9 257 32.7
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 3.3e-24 115.9 137 46.7
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 9.6e-24 114.4 106 44.3
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.4e-22 109.8 95 45.3
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 5.3e-22 108.6 57 77.2
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 3.4e-21 105.9 56 75.0
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 3.5e-18 95.9 112 47.3
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 2.3e-17 93.2 111 36.9
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 2.3e-17 93.2 104 42.3
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 7.6e-13 78.2 114 39.5
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 2.9e-12 76.3 40 77.5
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 8.4e-12 74.7 119 37.8
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 1.4e-11 73.9 112 42.9
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 2.3e-09 66.6 46 58.7
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.3e-07 60.8 34 67.6
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 1.3e-07 60.8 34 67.6


User provided reference genes

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