Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 3.1e-224 781.6 415 100.0
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 7.2e-181 637.5 423 84.9
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.0e-163 580.5 426 77.5
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 2.3e-163 579.3 415 78.1
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 3.1e-160 568.9 407 78.1
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 2.1e-156 556.2 425 74.1
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 2.0e-151 539.7 424 72.4
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 1.1e-149 533.9 404 74.8
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 1.9e-141 506.5 287 95.1
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.8e-139 500.0 419 65.6
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.2e-138 497.3 423 65.2
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.3e-137 493.8 424 64.6
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.9e-137 492.7 415 64.1
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 9.2e-136 487.6 408 64.0
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.2e-135 487.3 427 65.1
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 2.0e-135 486.5 419 64.7
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 6.6e-134 481.5 447 62.0
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 1.5e-133 480.3 413 64.9
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 1.9e-133 479.9 377 67.6
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 9.5e-133 477.6 394 66.0
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.5e-133 477.6 394 66.0
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.0e-131 474.2 394 65.7
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.6e-130 469.5 451 59.6
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 4.4e-130 468.8 420 63.1
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 2.9e-129 466.1 396 63.6
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.7e-129 465.7 427 62.5
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 6.4e-129 464.9 416 63.5
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 2.4e-128 463.0 344 70.1
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.2e-127 460.7 429 61.5
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 4.6e-127 458.8 438 60.3
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.3e-126 457.2 428 59.6
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.7e-126 456.8 406 61.6
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 8.6e-126 454.5 364 66.5
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 1.5e-125 453.8 411 61.3
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-125 453.0 368 66.6
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.2e-124 450.7 336 70.8
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 1.1e-123 447.6 383 64.8
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 1.8e-123 446.8 365 64.7
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.8e-123 446.8 355 67.0
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 3.1e-123 446.0 403 60.8
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 4.0e-123 445.7 357 66.9
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 6.8e-123 444.9 420 58.6
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 1.2e-122 444.1 402 61.7
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.8e-122 441.8 405 59.0
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 7.5e-122 441.4 380 62.4
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 1.3e-121 440.7 417 60.0
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 2.9e-121 439.5 416 59.1
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 4.9e-121 438.7 421 58.9
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 4.9e-121 438.7 344 67.2
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 6.4e-121 438.3 368 64.4
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.3e-121 438.0 460 57.0
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 4.1e-120 435.6 347 64.8
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 4.1e-120 435.6 371 62.5
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 2.1e-119 433.3 367 63.5
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 2.1e-119 433.3 371 62.0
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.1e-117 427.6 407 58.7
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 3.6e-116 422.5 420 58.1
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 6.2e-116 421.8 316 69.9
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.8e-115 420.2 362 62.4
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.8e-115 420.2 362 62.4
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.8e-115 418.3 442 55.9
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 8.9e-115 417.9 366 61.7
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 8.9e-115 417.9 366 61.7
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 4.4e-114 415.6 408 58.6
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 2.2e-113 413.3 408 57.4
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 2.2e-113 413.3 506 50.0
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 3.8e-113 412.5 363 62.3
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 7.1e-112 408.3 352 61.6
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 9.2e-112 407.9 367 60.5
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 1.2e-111 407.5 420 55.2
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.3e-110 403.3 331 62.2
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 4.3e-109 399.1 349 62.8
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 9.6e-109 397.9 507 51.9
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.8e-107 393.7 393 55.2
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.8e-107 393.7 416 54.3
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 2.4e-104 383.3 405 54.3
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 9.3e-104 381.3 398 55.0
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 3.0e-102 376.3 367 60.5
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 3.3e-101 372.9 351 57.3
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 1.3e-100 370.9 479 47.4
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-100 370.9 367 57.2
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 1.2e-98 364.4 317 63.7
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 7.6e-98 361.7 402 53.0
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.2e-95 354.4 332 55.7
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 6.0e-95 352.1 402 52.0
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 5.1e-94 349.0 412 49.0
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.8e-92 343.2 355 53.5
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 3.6e-92 342.8 322 60.9
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.1e-88 331.3 412 49.0
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.8e-84 316.6 402 47.8
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 6.9e-83 312.0 285 62.5
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.5e-74 284.3 266 60.9
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.3e-73 281.2 236 63.1
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 9.3e-72 275.0 345 47.5
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 3.0e-70 270.0 406 43.6
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 3.9e-70 269.6 216 66.7
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 7.4e-69 265.4 242 62.4
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.8e-67 260.8 153 93.5
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.8e-67 260.8 213 63.4
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 2.0e-66 257.3 284 51.4
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 2.2e-65 253.8 256 55.5
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 5.5e-64 249.2 212 61.8
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.6e-63 247.7 432 40.3
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 1.4e-59 234.6 233 60.5
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 1.0e-57 228.4 331 40.8
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 3.2e-56 223.4 335 40.6
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 3.6e-55 219.9 252 49.6
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 6.1e-55 219.2 159 78.0
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 7.4e-53 212.2 329 42.6
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 3.5e-50 203.4 235 53.2
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.3e-49 201.4 160 71.9
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 4.2e-48 196.4 233 50.6
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 1.4e-46 191.4 182 56.0
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.2e-46 189.5 340 36.2
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 1.7e-44 184.5 226 53.1
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 1.1e-40 171.8 125 70.4
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.1e-39 167.5 348 36.8
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 2.7e-39 167.2 205 46.3
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 3.6e-39 166.8 332 37.7
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-38 164.9 205 44.9
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 1.6e-34 151.4 129 59.7
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-32 144.8 124 67.7
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 4.7e-31 139.8 341 30.5
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 6.1e-31 139.4 336 33.0
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 6.1e-31 139.4 102 72.5
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.0e-30 138.7 82 90.2
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.8e-28 130.6 330 32.4
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 4.9e-28 129.8 118 57.6
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.9e-28 129.8 351 30.5
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 8.3e-28 129.0 390 30.0
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 8.3e-28 129.0 117 65.8
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.6e-26 124.8 104 65.4
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.0e-25 122.1 84 69.0
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.6e-25 119.0 92 67.4
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 1.5e-24 118.2 169 43.8
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 2.8e-23 114.0 101 59.4
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.1e-19 102.1 80 70.0
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-19 102.1 73 80.8
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 2.7e-18 97.4 119 42.9
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 5.6e-16 89.7 53 84.9
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.6e-15 88.2 64 64.1
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 4.7e-15 86.7 59 67.8
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 8.9e-14 82.4 71 53.5
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.4e-13 80.1 59 72.9
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 5.8e-13 79.7 99 43.4
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 2.9e-12 77.4 64 57.8
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 4.9e-12 76.6 61 62.3
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 4.1e-11 73.6 100 42.0
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 7.0e-11 72.8 153 31.4
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 1.7e-09 68.2 405 25.2
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.3e-09 67.8 55 65.5
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.1e-08 65.5 66 51.5
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 3.3e-08 63.9 377 24.7
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 5.2e-06 56.6 68 52.9


User provided reference genes

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