Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 4.9e-171 604.4 303 100.0
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 1.1e-154 550.1 303 90.1
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.1e-146 523.5 303 86.1
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 4.1e-141 505.0 300 86.0
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 3.0e-136 488.8 303 80.2
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 9.7e-135 483.8 272 88.6
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 3.2e-130 468.8 303 78.2
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 1.4e-120 436.8 289 72.7
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 4.8e-118 428.3 290 71.4
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 2.4e-117 426.0 290 72.1
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 5.3e-117 424.9 288 71.5
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.2e-116 423.7 290 70.7
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 5.9e-116 421.4 295 67.8
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 5.9e-116 421.4 289 70.6
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 2.2e-115 419.5 290 70.3
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 3.2e-114 415.6 289 69.6
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 5.5e-114 414.8 291 71.1
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 9.4e-114 414.1 290 68.3
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 4.7e-113 411.8 298 66.4
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 4.7e-113 411.8 292 67.8
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 6.1e-113 411.4 290 68.6
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 6.1e-113 411.4 290 69.3
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 8.0e-113 411.0 287 70.4
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.0e-112 409.1 288 66.3
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.2e-111 407.1 290 67.9
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 1.5e-111 406.8 288 67.0
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 2.6e-111 406.0 289 66.4
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 3.3e-111 405.6 290 67.6
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 9.7e-111 404.1 296 65.5
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.3e-110 403.7 289 66.8
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 5.9e-108 394.8 287 65.2
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.7e-107 393.3 292 62.7
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 6.5e-107 391.3 290 65.9
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.5e-106 390.2 288 62.5
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.9e-106 389.8 287 65.9
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 2.5e-106 389.4 290 64.8
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 2.5e-106 389.4 287 65.5
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 3.2e-106 389.0 288 62.8
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 7.2e-106 387.9 305 61.0
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.2e-105 387.1 304 63.8
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.0e-104 384.0 297 62.6
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.0e-104 384.0 317 61.8
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 1.8e-104 383.3 297 64.6
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 4.0e-104 382.1 298 64.1
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 8.8e-104 380.9 298 63.8
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.5e-103 380.2 298 63.4
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 4.4e-103 378.6 288 62.2
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 8.3e-102 374.4 210 88.1
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.4e-101 372.9 297 59.6
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 9.1e-101 370.9 288 62.5
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 2.0e-100 369.8 292 61.3
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 4.5e-100 368.6 289 61.9
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 5.9e-100 368.2 295 59.7
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 1.3e-99 367.1 265 69.4
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 2.3e-99 366.3 292 60.3
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 3.8e-99 365.5 300 60.7
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 5.0e-99 365.2 290 59.7
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 6.5e-99 364.8 297 58.6
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 6.5e-99 364.8 297 58.6
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 6.5e-99 364.8 289 63.0
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 3.2e-98 362.5 294 60.9
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 7.2e-98 361.3 294 60.9
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 4.7e-97 358.6 290 60.7
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 8.0e-97 357.8 304 56.6
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.0e-96 357.5 278 62.2
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 1.8e-96 356.7 295 59.0
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.2e-95 354.0 288 59.4
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 2.0e-95 353.2 268 63.1
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 2.2e-94 349.7 327 54.1
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 3.7e-94 349.0 288 59.7
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 4.9e-94 348.6 302 60.3
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 8.3e-94 347.8 294 57.5
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.8e-93 346.7 253 65.2
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 3.1e-93 345.9 288 58.7
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 5.4e-93 345.1 356 50.6
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 1.2e-92 344.0 293 56.7
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 6.6e-91 338.2 238 67.6
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 6.1e-89 331.6 274 57.3
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 6.8e-88 328.2 294 56.5
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 5.7e-87 325.1 291 54.3
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.2e-86 323.2 267 58.4
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 3.7e-86 322.4 185 83.8
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 4.9e-86 322.0 300 56.3
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.4e-85 320.5 230 66.1
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 5.9e-84 315.1 287 55.1
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.2e-78 296.6 196 67.9
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 6.4e-78 295.0 216 70.4
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.1e-77 294.3 211 67.8
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 1.9e-77 293.5 207 66.2
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 2.4e-77 293.1 229 63.8
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 6.0e-76 288.5 222 62.2
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 9.5e-74 281.2 242 59.9
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.6e-73 280.4 294 48.6
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 5.1e-67 258.8 291 47.1
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 2.1e-65 253.4 308 41.9
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 8.1e-65 251.5 184 71.7
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 2.0e-63 246.9 288 42.0
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 2.6e-63 246.5 280 46.8
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 3.8e-62 242.7 201 58.7
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.5e-58 230.7 287 44.9
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 3.1e-56 223.0 186 58.1
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.9e-54 216.5 169 62.7
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 6.6e-51 205.3 201 52.2
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-49 201.1 185 53.5
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 6.9e-48 195.3 214 45.8
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 2.9e-38 163.3 124 61.3
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 3.8e-38 162.9 129 61.2
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 8.4e-38 161.8 108 76.9
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 1.9e-37 160.6 87 89.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.5e-34 150.2 321 31.8
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.1e-32 144.8 91 71.4
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.1e-32 144.8 90 74.4
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 4.0e-32 142.9 97 74.2
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.2e-28 131.3 91 64.8
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 1.2e-28 131.3 95 67.4
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 1.1e-26 124.8 90 64.4
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 4.3e-26 122.9 147 45.6
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.2e-23 114.8 128 47.7
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.6e-23 112.1 86 59.3
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 1.4e-21 107.8 172 33.7
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 5.5e-21 105.9 75 64.0
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 2.1e-20 104.0 67 68.7
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.8e-19 100.9 122 45.9
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 2.3e-19 100.5 214 31.3
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 4.8e-17 92.8 62 66.1
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 1.8e-16 90.9 98 48.0
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.5e-15 87.8 72 62.5
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 5.9e-15 85.9 91 50.5
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-12 77.0 50 68.0
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-09 68.2 57 50.9
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 5.3e-08 62.8 51 54.9


User provided reference genes

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