Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 1.5e-183 646.0 316 100.0
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 2.5e-141 505.8 319 79.0
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 3.0e-139 498.8 313 79.2
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 3.0e-131 472.2 352 69.6
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.8e-123 446.4 309 71.5
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.3e-118 430.3 310 68.7
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 4.4e-114 415.2 310 66.5
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 9.8e-114 414.1 308 66.9
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 2.2e-113 412.9 309 65.7
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-109 400.6 308 65.3
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-109 400.6 308 65.3
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 1.9e-109 399.8 308 65.3
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 2.0e-98 363.2 305 58.7
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 1.4e-96 357.1 305 58.7
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 1.9e-96 356.7 305 57.4
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 4.6e-95 352.1 308 56.2
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 7.8e-95 351.3 316 61.7
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 1.7e-94 350.1 304 56.9
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 2.3e-94 349.7 310 57.7
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 6.6e-94 348.2 308 56.8
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 1.5e-93 347.1 308 54.9
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 3.6e-92 342.4 308 57.1
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 4.7e-92 342.0 308 54.2
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 8.1e-92 341.3 305 57.4
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.4e-91 340.5 308 54.9
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 8.9e-91 337.8 308 54.2
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 1.5e-90 337.0 300 55.3
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 3.4e-90 335.9 304 54.9
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 3.4e-90 335.9 302 54.3
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 7.6e-90 334.7 298 55.4
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 9.9e-90 334.3 298 55.4
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 1.7e-89 333.6 334 53.3
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 1.7e-89 333.6 298 55.4
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 2.2e-89 333.2 304 53.9
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 2.9e-89 332.8 308 51.9
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 6.4e-89 331.6 301 53.5
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 1.9e-88 330.1 305 53.1
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 1.6e-87 327.0 308 54.9
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.7e-87 326.2 302 52.3
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.0e-86 324.3 302 52.3
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 2.3e-86 323.2 302 52.0
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 6.6e-86 321.6 308 53.9
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.9e-85 320.1 302 51.7
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 3.3e-85 319.3 302 51.3
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 3.6e-84 315.8 308 50.3
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 1.8e-83 313.5 302 52.0
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 2.4e-83 313.2 302 52.6
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 4.0e-83 312.4 305 52.1
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 6.9e-83 311.6 304 50.3
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 2.0e-82 310.1 307 51.8
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 3.4e-82 309.3 293 51.2
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 4.4e-82 308.9 305 51.8
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 2.2e-81 306.6 300 53.0
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 8.4e-81 304.7 242 61.6
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 9.3e-80 301.2 302 52.0
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 1.6e-79 300.4 301 51.5
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 5.1e-78 295.4 302 49.0
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 1.5e-77 293.9 302 48.3
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 9.6e-77 291.2 243 59.3
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 4.8e-76 288.9 255 54.1
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 9.0e-75 284.6 302 48.3
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 1.3e-73 280.8 310 48.7
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 2.2e-73 280.0 253 54.2
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 6.4e-73 278.5 300 48.3
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 8.4e-73 278.1 302 46.0
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 7.1e-72 275.0 307 46.9
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 9.3e-72 274.6 253 53.0
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 1.2e-71 274.2 305 47.9
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 1.3e-70 270.8 194 64.9
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 6.7e-70 268.5 304 45.7
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 1.1e-69 267.7 307 46.6
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.6e-66 256.5 314 44.9
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.5e-64 250.0 198 59.1
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 2.5e-64 250.0 212 61.3
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.5e-64 250.0 296 43.9
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.7e-63 246.5 314 43.6
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 4.6e-63 245.7 337 40.9
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 6.7e-62 241.9 238 51.3
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.5e-61 240.0 311 41.2
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 5.8e-58 228.8 207 56.0
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 8.4e-57 224.9 189 54.5
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 3.5e-55 219.5 309 40.5
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 9.0e-51 204.9 307 38.1
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 6.5e-49 198.7 195 54.4
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.2e-47 194.5 133 60.9
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 6.1e-47 192.2 201 49.8
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 2.8e-44 183.3 308 34.4
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.9e-41 173.3 141 55.3
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 2.9e-41 173.3 261 40.6
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 2.0e-37 160.6 309 31.7
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.7e-36 156.4 108 63.9
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 4.8e-36 156.0 261 36.4
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 5.7e-29 132.5 179 45.3
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 1.7e-28 131.0 340 30.0
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.8e-27 127.5 137 51.8
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 1.5e-24 117.9 80 67.5
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 4.2e-24 116.3 86 65.1
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 1.2e-18 98.2 115 45.2
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 3.5e-18 96.7 81 58.0
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 1.9e-16 90.9 233 31.3
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.6e-15 87.8 117 38.5
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.7e-10 70.5 249 26.9
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.0e-09 68.6 246 26.8
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.8e-09 66.6 236 25.0
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.1e-08 65.1 172 30.2
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-08 65.1 236 25.0
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.1e-08 65.1 191 28.8
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 2.5e-08 63.9 183 27.3
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.3e-08 63.5 206 26.2
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 3.3e-08 63.5 209 27.3
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 3.3e-08 63.5 221 24.0
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 4.2e-08 63.2 230 26.1
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 4.2e-08 63.2 182 27.5
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 4.2e-08 63.2 182 28.0
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 7.2e-08 62.4 181 26.5
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 9.5e-08 62.0 246 24.4
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 9.5e-08 62.0 255 25.5
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.2e-07 61.6 204 27.0
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.1e-07 60.8 37 70.3
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.8e-07 60.5 210 25.7
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 2.8e-07 60.5 213 26.8
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.8e-07 60.5 156 24.4
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 3.6e-07 60.1 246 24.8
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 3.6e-07 60.1 246 24.8
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.1e-07 59.3 229 23.6
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.0e-06 58.5 210 24.3
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.0e-06 58.5 39 61.5
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.0e-06 58.5 183 26.2
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.4e-06 58.2 238 26.9
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.8e-06 57.8 168 29.2
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.8e-06 57.8 182 26.4
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 2.3e-06 57.4 173 27.7
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 3.0e-06 57.0 208 26.4
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 3.0e-06 57.0 208 26.4
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 3.0e-06 57.0 145 29.7
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 4.0e-06 56.6 251 25.9
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 4.0e-06 56.6 145 29.0
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 4.0e-06 56.6 232 22.4
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 5.2e-06 56.2 184 28.8
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 6.8e-06 55.8 204 24.5
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 6.8e-06 55.8 204 24.5
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 8.9e-06 55.5 146 30.8
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 8.9e-06 55.5 204 25.5
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 8.9e-06 55.5 145 29.7


User provided reference genes

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