Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 7.3e-65 250.4 123 100.0
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 3.0e-58 228.4 123 89.4
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 1.9e-57 225.7 123 91.1
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 5.6e-57 224.2 123 88.6
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 9.6e-57 223.4 123 90.2
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 1.2e-56 223.0 123 88.6
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 8.1e-56 220.3 123 87.8
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 1.1e-55 219.9 123 87.8
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.8e-55 219.2 123 87.0
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.4e-55 218.8 123 86.2
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 3.1e-55 218.4 123 86.2
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 9.9e-54 213.4 121 83.5
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 2.2e-53 212.2 123 82.9
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 3.8e-53 211.5 123 82.1
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 1.9e-52 209.1 123 81.3
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 4.2e-52 208.0 123 81.3
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 6.0e-51 204.1 123 78.9
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 6.0e-51 204.1 122 79.5
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 7.8e-51 203.8 123 80.5
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 1.7e-50 202.6 123 78.9
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 1.7e-50 202.6 123 78.0
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 1.7e-50 202.6 123 76.4
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 2.3e-50 202.2 123 80.5
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 3.0e-50 201.8 123 78.0
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 3.0e-50 201.8 123 77.2
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.9e-50 201.4 123 77.2
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 5.1e-50 201.1 123 77.2
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 5.1e-50 201.1 123 76.4
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 5.1e-50 201.1 123 77.2
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 8.7e-50 200.3 121 76.9
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 1.1e-49 199.9 122 77.0
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.1e-49 199.9 123 76.4
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.1e-49 199.9 123 75.6
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 77.2
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.5e-49 198.7 123 76.4
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 78.2
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 2.5e-49 198.7 123 74.8
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 74.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 74.0
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 5.6e-49 197.6 123 76.4
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 5.6e-49 197.6 123 74.8
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 7.3e-49 197.2 123 74.8
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 9.6e-49 196.8 121 77.7
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 9.6e-49 196.8 123 75.6
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 1.3e-48 196.4 123 76.4
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 1.3e-48 196.4 123 74.8
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 1.3e-48 196.4 123 76.4
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.6e-48 196.1 124 76.6
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 1.6e-48 196.1 123 75.6
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.6e-48 196.1 123 74.8
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 1.6e-48 196.1 123 74.8
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 2.1e-48 195.7 123 76.4
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.1e-48 195.7 123 76.4
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 2.1e-48 195.7 123 76.4
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 2.8e-48 195.3 123 75.6
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.8e-48 195.3 123 76.4
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 3.6e-48 194.9 123 74.0
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.8e-48 194.5 122 73.8
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 6.2e-48 194.1 124 75.8
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 6.2e-48 194.1 123 75.6
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 8.1e-48 193.7 123 72.4
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.1e-47 193.4 123 73.2
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 1.4e-47 193.0 124 75.0
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.4e-47 193.0 123 75.6
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.4e-47 193.0 123 74.8
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 1.4e-47 193.0 123 74.8
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 1.8e-47 192.6 123 72.4
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 2.4e-47 192.2 124 75.8
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 4.0e-47 191.4 123 77.2
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 6.9e-47 190.7 122 75.4
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 9.0e-47 190.3 123 73.2
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.2e-46 189.9 125 75.2
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.2e-46 189.9 125 75.2
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 2.0e-46 189.1 123 73.2
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 2.0e-46 189.1 123 71.5
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 2.0e-46 189.1 125 76.0
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 2.0e-46 189.1 123 71.5
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 2.6e-46 188.7 125 75.2
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 4.5e-46 188.0 125 74.4
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.8e-46 187.6 125 74.4
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 5.8e-46 187.6 116 74.1
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 7.6e-46 187.2 123 73.2
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 7.6e-46 187.2 123 73.2
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 9.9e-46 186.8 123 69.9
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 9.9e-46 186.8 125 75.2
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 9.9e-46 186.8 124 71.8
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 9.9e-46 186.8 123 70.7
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 1.3e-45 186.4 124 71.0
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 2.2e-45 185.7 125 74.4
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.2e-45 185.7 123 69.1
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 2.9e-45 185.3 123 72.4
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 4.9e-45 184.5 124 71.0
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 4.9e-45 184.5 124 70.2
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.4e-44 183.0 121 68.6
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.9e-44 182.6 123 67.5
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.4e-44 182.2 126 70.6
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 3.2e-44 181.8 116 75.0
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 3.2e-44 181.8 124 70.2
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 4.2e-44 181.4 126 70.6
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 4.2e-44 181.4 126 70.6
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 7.1e-44 180.6 115 73.9
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 7.1e-44 180.6 124 73.4
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 9.3e-44 180.3 125 70.4
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 9.3e-44 180.3 125 71.2
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.2e-43 179.9 126 69.8
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.2e-43 179.9 125 69.6
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 1.2e-43 179.9 116 74.1
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.6e-43 179.5 116 72.4
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 1.6e-43 179.5 124 70.2
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 3.5e-43 178.3 125 68.8
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 6.0e-43 177.6 125 68.8
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 6.0e-43 177.6 129 65.9
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.0e-42 176.8 125 68.8
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 1.3e-42 176.4 118 73.7
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.3e-42 176.4 126 67.5
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.3e-42 176.4 125 70.4
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 1.8e-42 176.0 118 70.3
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 1.8e-42 176.0 124 72.6
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 2.3e-42 175.6 121 70.2
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 3.9e-42 174.9 127 64.6
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 3.9e-42 174.9 127 64.6
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 5.1e-42 174.5 125 68.0
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 6.7e-42 174.1 128 65.6
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 6.7e-42 174.1 128 65.6
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 6.7e-42 174.1 125 69.6
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 8.7e-42 173.7 125 67.2
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 8.7e-42 173.7 121 69.4
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 1.9e-41 172.6 125 68.8
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.9e-41 172.6 125 68.8
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 4.3e-41 171.4 123 69.1
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 7.4e-41 170.6 125 69.6
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 9.6e-41 170.2 125 67.2
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 1.6e-40 169.5 123 60.2
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.6e-40 169.5 125 67.2
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.6e-40 169.5 123 65.0
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 2.8e-40 168.7 125 68.0
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 3.7e-40 168.3 127 63.0
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 1.8e-39 166.0 123 65.0
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.8e-39 166.0 107 70.1
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 3.1e-39 165.2 123 61.0
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 4.0e-39 164.9 124 65.3
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.0e-39 164.9 122 65.6
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.0e-39 164.9 122 65.6
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.0e-39 164.9 123 62.6
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 1.2e-38 163.3 123 60.2
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 9.9e-38 160.2 122 63.1
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 2.2e-37 159.1 122 67.2
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 6.4e-37 157.5 122 61.5
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.1e-36 156.8 116 63.8
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 1.4e-36 156.4 113 67.3
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.6e-35 151.4 109 63.3
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 1.8e-34 149.4 122 59.0
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.1e-32 142.5 88 71.6
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.8e-31 139.4 106 65.1
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 6.9e-31 137.5 131 51.9
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 9.0e-31 137.1 132 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 1.2e-30 136.7 123 52.8
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 7.9e-27 124.0 122 48.4
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 3.9e-26 121.7 123 54.5
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 6.3e-24 114.4 132 46.2
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.8e-23 112.8 106 53.8
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.6e-22 109.0 115 49.6
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 3.2e-20 102.1 123 45.5
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.6e-19 99.8 68 66.2
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 3.6e-19 98.6 63 65.1
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 2.5e-17 92.4 122 42.6
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.3e-16 87.8 57 64.9
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 4.8e-08 61.6 39 64.1


User provided reference genes

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