Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 2.6e-175 618.6 309 100.0
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.5e-162 575.5 309 90.9
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 3.3e-162 575.1 309 91.3
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 5.2e-160 567.8 309 89.3
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 3.2e-157 558.5 309 89.0
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 1.6e-148 529.6 305 84.9
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 4.0e-144 515.0 309 82.2
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 3.4e-143 511.9 309 82.5
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 4.4e-143 511.5 325 79.1
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 9.8e-143 510.4 317 81.1
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 2.2e-142 509.2 311 81.0
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 2.4e-141 505.8 305 81.3
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 3.2e-141 505.4 305 81.6
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 4.1e-141 505.0 305 81.3
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 4.6e-140 501.5 309 77.3
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 1.3e-139 500.0 311 79.7
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 3.3e-138 495.4 309 79.0
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 6.2e-137 491.1 310 77.7
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.1e-136 490.3 309 76.1
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.3e-136 489.2 310 77.4
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 3.1e-136 488.8 309 76.1
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 1.2e-135 486.9 309 75.4
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.0e-135 486.1 310 76.8
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 1.7e-134 483.0 310 74.5
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 2.2e-134 482.6 309 75.1
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.9e-134 482.3 309 76.4
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.9e-134 482.3 309 76.4
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 3.7e-134 481.9 313 76.7
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 4.9e-134 481.5 308 75.0
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 6.4e-134 481.1 310 76.1
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 1.1e-133 480.3 310 75.8
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 1.1e-133 480.3 310 74.8
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 1.4e-133 479.9 308 75.0
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 1.9e-133 479.6 310 76.5
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 2.4e-133 479.2 310 76.5
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 2.7e-132 475.7 307 75.2
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.5e-132 475.3 309 75.7
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 3.5e-132 475.3 310 74.5
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 4.6e-132 474.9 310 74.8
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 4.6e-132 474.9 309 74.8
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 7.8e-132 474.2 310 73.5
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 1.0e-131 473.8 310 74.2
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 2.3e-131 472.6 311 73.3
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 1.1e-130 470.3 306 76.5
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.3e-130 468.8 306 75.8
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 4.3e-130 468.4 310 74.8
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 5.6e-130 468.0 306 74.8
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 2.8e-129 465.7 306 75.5
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 8.1e-129 464.2 310 72.6
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.4e-128 463.4 308 73.4
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 1.4e-128 463.4 309 72.5
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 1.8e-128 463.0 310 75.2
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 4.0e-128 461.8 306 74.8
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.5e-127 459.9 306 73.9
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 2.6e-127 459.1 306 73.9
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 3.4e-127 458.8 306 74.2
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 4.4e-127 458.4 388 63.9
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 5.8e-127 458.0 306 73.5
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 9.9e-127 457.2 280 79.6
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 1.3e-126 456.8 356 64.6
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 2.2e-126 456.1 306 73.5
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.1e-125 453.8 306 72.9
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 2.4e-125 452.6 300 73.7
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 4.2e-125 451.8 320 69.7
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 5.4e-125 451.4 277 76.9
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 2.1e-124 449.5 306 71.2
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 2.7e-124 449.1 326 69.6
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 6.0e-124 448.0 310 71.3
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 1.3e-123 446.8 305 73.1
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 3.0e-123 445.7 305 72.8
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.0e-123 445.7 306 73.9
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 5.1e-123 444.9 305 73.8
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 8.7e-123 444.1 305 72.8
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 1.5e-122 443.4 305 73.4
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.9e-122 443.0 305 72.1
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.3e-122 442.2 311 70.4
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 5.6e-122 441.4 311 71.4
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 7.3e-122 441.0 311 71.1
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.6e-121 439.9 306 72.5
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.6e-121 439.9 311 70.4
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.6e-121 439.9 311 70.4
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.1e-121 439.5 310 70.3
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.8e-121 439.1 310 70.0
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 3.6e-121 438.7 311 70.1
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 3.6e-121 438.7 311 70.1
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.8e-120 436.4 306 70.9
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 1.8e-120 436.4 306 70.9
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 7.6e-119 431.0 329 64.4
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 9.9e-119 430.6 308 67.2
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 1.3e-118 430.3 306 68.6
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 2.2e-118 429.5 312 69.6
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 1.2e-116 423.7 340 64.7
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 7.9e-116 421.0 307 70.4
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 7.3e-114 414.5 297 68.4
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 2.8e-113 412.5 306 65.4
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 7.6e-111 404.4 244 79.1
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 1.3e-110 403.7 297 63.3
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.1e-109 400.6 284 69.4
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 4.2e-109 398.7 240 81.2
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 1.3e-107 393.7 283 69.6
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.2e-103 380.6 310 62.6
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 2.2e-102 376.3 251 72.9
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 2.7e-100 369.4 241 73.9
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 7.4e-98 361.3 309 61.5
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 3.1e-96 355.9 306 60.5
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 8.2e-89 331.3 209 76.6
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 6.9e-88 328.2 299 55.2
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 8.5e-86 321.2 228 69.3
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 4.2e-85 318.9 295 55.6
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 8.2e-81 304.7 290 52.8
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.4e-77 293.9 293 52.6
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 4.4e-66 255.8 290 45.5
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.3e-62 244.2 147 78.9
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.2e-61 239.6 145 79.3
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 1.2e-55 221.1 319 44.5
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.1e-53 214.5 181 55.2
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 3.2e-53 213.0 290 40.3
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 1.4e-48 197.6 155 61.3
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.1e-40 171.4 184 54.3
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.4e-40 171.0 149 63.1
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 5.6e-37 159.1 98 81.6
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 6.2e-36 155.6 149 56.4
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 1.0e-35 154.8 99 79.8
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.5e-31 139.8 99 67.7
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 7.3e-21 105.5 58 86.2
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.8e-19 100.9 66 69.7
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.3e-17 94.7 67 59.7
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.3e-14 84.7 65 63.1
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.3e-14 84.0 60 66.7
Psat6g049160 Pisum sativum HOM05D006018 ORTHO05D320225 3.4e-10 70.1 37 89.2


User provided reference genes

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