Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 2.9e-60 235.0 113 100.0
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 1.5e-19 99.8 62 80.6
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 5.6e-19 97.8 62 80.6
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 1.2e-18 96.7 61 78.7
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 1.6e-18 96.3 62 79.0
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 1.6e-18 96.3 61 77.0
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 2.8e-18 95.5 61 77.0
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 4.7e-18 94.7 61 77.0
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 4.7e-18 94.7 60 78.3
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 8.0e-18 94.0 61 75.4
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 1.1e-17 93.6 61 75.4
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 1.1e-17 93.6 62 75.8
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 1.8e-17 92.8 61 77.0
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 2.3e-17 92.4 61 75.4
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 2.3e-17 92.4 60 76.7
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 3.1e-17 92.0 61 75.4
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 3.1e-17 92.0 61 73.8
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 3.1e-17 92.0 60 73.3
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 4.0e-17 91.7 60 75.0
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 4.0e-17 91.7 61 73.8
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 4.0e-17 91.7 61 72.1
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 6.8e-17 90.9 61 72.1
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 8.9e-17 90.5 61 72.1
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 1.2e-16 90.1 60 70.0
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 1.5e-16 89.7 61 72.1
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 1.5e-16 89.7 59 76.3
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 1.5e-16 89.7 60 73.3
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 2.6e-16 89.0 59 76.3
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 2.6e-16 89.0 62 71.0
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 2.6e-16 89.0 61 72.1
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 4.4e-16 88.2 59 72.9
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 4.4e-16 88.2 61 72.1
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 5.8e-16 87.8 60 71.7
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 7.5e-16 87.4 60 71.7
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 7.5e-16 87.4 60 71.7
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 7.5e-16 87.4 60 71.7
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 7.5e-16 87.4 60 71.7
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 9.8e-16 87.0 60 68.3
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 9.8e-16 87.0 61 70.5
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 1.3e-15 86.7 61 67.2
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 1.3e-15 86.7 59 72.9
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.3e-15 86.7 61 68.9
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 1.7e-15 86.3 60 71.7
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 1.7e-15 86.3 61 67.2
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 1.7e-15 86.3 60 70.0
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 1.7e-15 86.3 60 71.7
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 1.7e-15 86.3 59 71.2
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 2.2e-15 85.9 59 71.2
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 2.2e-15 85.9 59 71.2
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 2.2e-15 85.9 59 71.2
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 2.2e-15 85.9 60 71.7
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 2.2e-15 85.9 60 68.3
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 2.9e-15 85.5 60 70.0
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 2.9e-15 85.5 60 70.0
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 2.9e-15 85.5 60 70.0
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 2.9e-15 85.5 60 70.0
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 2.9e-15 85.5 60 70.0
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 2.9e-15 85.5 60 70.0
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 2.9e-15 85.5 60 70.0
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.9e-15 85.5 60 70.0
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.9e-15 85.5 60 70.0
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 3.7e-15 85.1 60 70.0
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 4.9e-15 84.7 59 69.5
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 4.9e-15 84.7 60 71.7
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 6.4e-15 84.3 60 70.0
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 6.4e-15 84.3 60 70.0
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 6.4e-15 84.3 60 68.3
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 6.4e-15 84.3 61 68.9
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 6.4e-15 84.3 60 68.3
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 6.4e-15 84.3 57 71.9
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 6.4e-15 84.3 60 68.3
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 8.3e-15 84.0 59 69.5
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 8.3e-15 84.0 60 66.7
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 8.3e-15 84.0 60 66.7
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 1.1e-14 83.6 59 69.5
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 1.1e-14 83.6 61 68.9
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.1e-14 83.6 60 70.0
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 1.1e-14 83.6 61 67.2
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.1e-14 83.6 59 69.5
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 1.4e-14 83.2 60 68.3
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 1.4e-14 83.2 61 67.2
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 1.9e-14 82.8 59 69.5
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 1.9e-14 82.8 60 66.7
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 2.4e-14 82.4 61 68.9
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 2.4e-14 82.4 61 68.9
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 2.4e-14 82.4 60 68.3
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 2.4e-14 82.4 60 68.3
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 2.4e-14 82.4 60 68.3
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 3.2e-14 82.0 61 68.9
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 4.1e-14 81.6 59 67.8
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 5.4e-14 81.3 60 68.3
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 7.0e-14 80.9 59 67.8
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 1.2e-13 80.1 61 60.7
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.2e-13 80.1 60 65.0
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 1.2e-13 80.1 60 63.3
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 1.6e-13 79.7 59 67.8
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 4.6e-13 78.2 60 65.0
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 6.0e-13 77.8 57 68.4
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 6.0e-13 77.8 60 65.0
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 6.0e-13 77.8 60 61.7
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 1.0e-12 77.0 60 61.7
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 1.3e-12 76.6 60 61.7
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 2.3e-12 75.9 60 60.0
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 2.3e-12 75.9 60 61.7
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 1.2e-10 70.1 60 58.3
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 1.6e-10 69.7 59 61.0
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 6.2e-10 67.8 60 58.3
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 1.4e-09 66.6 57 59.6
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 1.8e-09 66.2 58 56.9
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 2.6e-08 62.4 46 69.6
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 5.8e-08 61.2 49 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 1.7e-07 59.7 58 51.7
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 1.7e-07 59.7 55 54.5
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 1.4e-06 56.6 58 51.7
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 2.4e-06 55.8 26 80.8
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 9.2e-06 53.9 46 52.2


User provided reference genes

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