Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 8.2e-114 413.7 203 100.0
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 7.7e-112 407.1 203 97.5
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 4.2e-110 401.4 201 96.5
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 1.7e-103 379.4 200 92.5
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 1.5e-102 376.3 197 91.4
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 1.5e-102 376.3 197 90.9
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 1.9e-102 375.9 202 91.1
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 9.4e-102 373.6 197 90.4
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 8.0e-101 370.5 201 87.6
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 2.3e-100 369.0 202 86.6
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 5.2e-100 367.9 200 88.0
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 8.8e-100 367.1 201 86.6
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 1.5e-99 366.3 202 87.6
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 1.5e-99 366.3 202 87.6
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 9.8e-99 363.6 202 86.1
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 2.8e-98 362.1 202 85.1
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 4.9e-98 361.3 202 85.6
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 8.3e-98 360.5 202 85.6
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.4e-97 359.8 199 85.4
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 2.4e-97 359.0 202 83.7
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 2.4e-97 359.0 201 85.6
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 3.1e-97 358.6 195 86.2
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 3.1e-97 358.6 201 84.6
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 3.1e-97 358.6 202 86.1
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 3.1e-97 358.6 201 85.1
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 5.4e-97 357.8 194 87.6
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 7.0e-97 357.5 197 85.3
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 9.1e-97 357.1 200 85.0
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 1.6e-96 356.3 201 85.1
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 2.0e-96 355.9 192 87.5
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 2.0e-96 355.9 192 87.5
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 2.7e-96 355.5 199 84.4
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 3.5e-96 355.1 201 84.6
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 4.5e-96 354.8 195 86.2
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 4.5e-96 354.8 193 87.0
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 4.5e-96 354.8 198 83.8
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 4.5e-96 354.8 201 84.6
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 5.9e-96 354.4 193 86.5
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 5.9e-96 354.4 198 83.8
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 1.0e-95 353.6 200 83.5
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.3e-95 353.2 201 85.1
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.3e-95 353.2 198 83.8
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 1.3e-95 353.2 195 83.1
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 2.9e-95 352.1 195 84.6
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 3.8e-95 351.7 201 84.1
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 3.8e-95 351.7 195 84.1
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 3.8e-95 351.7 200 83.0
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.1e-94 350.1 200 83.0
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 1.5e-94 349.7 174 96.0
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 2.5e-94 349.0 201 84.6
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 3.3e-94 348.6 201 83.1
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 4.2e-94 348.2 214 81.8
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 4.2e-94 348.2 200 82.0
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 9.5e-94 347.1 202 84.7
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 2.1e-93 345.9 202 83.2
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 1.4e-92 343.2 199 81.4
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 1.8e-92 342.8 202 83.2
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 3.0e-92 342.0 187 84.5
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 4.0e-92 341.7 196 83.7
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 5.2e-92 341.3 198 82.3
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 8.9e-92 340.5 202 82.2
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 1.5e-91 339.7 200 83.0
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 1.5e-91 339.7 200 83.0
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 8.3e-90 334.0 249 69.5
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 1.1e-89 333.6 199 77.9
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 4.1e-89 331.6 196 80.1
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 1.2e-88 330.1 195 80.5
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.3e-87 325.9 201 80.1
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 2.3e-87 325.9 201 80.1
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 5.0e-87 324.7 196 77.0
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 5.0e-87 324.7 223 73.5
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 8.6e-87 323.9 202 76.2
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 1.1e-86 323.6 211 74.9
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 5.6e-86 321.2 200 79.5
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 7.3e-86 320.9 241 69.3
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 9.5e-86 320.5 230 70.0
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.2e-85 320.1 201 78.6
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 3.1e-84 315.5 186 79.0
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 4.0e-84 315.1 193 80.8
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 1.2e-83 313.5 191 80.6
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 5.8e-83 311.2 194 77.3
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.6e-80 303.1 203 74.4
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 2.7e-80 302.4 198 74.2
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 6.0e-80 301.2 200 79.0
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 2.3e-79 299.3 212 69.3
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 8.1e-77 290.8 185 75.7
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 2.3e-76 289.3 155 87.1
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 5.2e-76 288.1 188 72.3
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 4.4e-75 285.0 210 70.5
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 5.8e-75 284.6 254 60.6
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 6.4e-74 281.2 202 70.8
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 2.7e-72 275.8 154 83.1
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 1.6e-69 266.5 211 67.3
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 1.3e-66 256.9 201 64.7
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 1.4e-65 253.4 140 82.1
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 1.9e-65 253.1 131 87.8
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 9.2e-65 250.8 177 67.8
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 3.0e-63 245.7 193 63.2
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 1.9e-62 243.0 186 61.8
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 1.2e-61 240.4 219 61.6
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 1.4e-60 236.9 135 78.5
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 5.8e-59 231.5 196 61.7
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 9.9e-59 230.7 198 63.6
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 9.3e-57 224.2 180 59.4
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 7.8e-56 221.1 134 79.1
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 3.6e-53 212.2 116 81.0
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 2.6e-51 206.1 139 72.7
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 2.6e-51 206.1 179 55.9
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 7.6e-51 204.5 109 83.5
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 8.4e-50 201.1 135 70.4
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 1.1e-49 200.7 108 83.3
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 1.2e-48 197.2 108 83.3
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 3.0e-47 192.6 180 60.0
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 2.4e-44 183.0 171 53.2
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 4.6e-40 168.7 86 96.5
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 1.9e-38 163.3 92 82.6
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 6.2e-37 158.3 93 84.9
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 8.1e-37 157.9 89 87.6
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 1.4e-36 157.1 81 95.1
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 6.9e-36 154.8 97 72.2
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.5e-35 153.7 93 83.9
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 3.8e-34 149.1 97 72.2
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 4.9e-34 148.7 95 78.9
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 9.6e-30 134.4 82 73.2
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 2.1e-29 133.3 74 75.7
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 4.2e-25 119.0 66 80.3
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 1.5e-19 100.5 64 71.9
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 2.2e-18 96.7 62 80.6
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 1.6e-16 90.5 48 81.2
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 8.8e-15 84.7 46 93.5
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 3.3e-14 82.8 54 68.5
PRCOL_00003939 Prasinoderma coloniale HOM05D005047 ORTHO05D049269 5.3e-12 75.5 228 28.1
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 9.1e-12 74.7 43 86.0
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 1.5e-11 73.9 68 54.4
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 1.0e-10 71.2 39 84.6
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 1.0e-10 71.2 61 65.6
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 2.9e-10 69.7 38 78.9
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 1.4e-09 67.4 38 76.3
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 1.9e-09 67.0 91 40.7
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 2.5e-09 66.6 33 93.9
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 3.2e-09 66.2 39 79.5
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 4.2e-09 65.9 139 34.5
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.3e-07 60.1 34 85.3
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 8.8e-07 58.2 30 90.0
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 2.6e-06 56.6 31 83.9


User provided reference genes

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