Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g046830 Medicago truncatula HOM05D006550 ORTHO05D008630 1.5e-164 582.8 289 100.0
Medtr0004s0260 Medicago truncatula HOM05D006550 ORTHO05D008630 6.2e-131 471.1 292 80.8
Medtr1g106885 Medicago truncatula HOM05D006550 ORTHO05D008630 3.1e-130 468.8 324 73.5
Medtr4g026120 Medicago truncatula HOM05D006550 ORTHO05D008630 3.1e-130 468.8 324 73.5
Medtr4g036435 Medicago truncatula HOM05D006550 ORTHO05D008630 3.1e-130 468.8 324 73.5
Medtr5g066280 Medicago truncatula HOM05D006550 ORTHO05D008630 1.5e-129 466.5 324 73.1
Medtr3g067785 Medicago truncatula HOM05D006550 ORTHO05D008630 1.3e-128 463.4 324 72.8
Medtr4g013220 Medicago truncatula HOM05D006550 ORTHO05D008630 2.2e-128 462.6 324 72.8
Medtr2g022120 Medicago truncatula HOM05D006550 ORTHO05D008630 4.9e-128 461.5 323 72.8
Medtr5g077245 Medicago truncatula HOM05D006550 ORTHO05D008630 9.2e-127 457.2 323 72.1
Medtr6g453050 Medicago truncatula HOM05D006550 ORTHO05D008630 7.3e-124 447.6 318 72.0
Medtr6g092533 Medicago truncatula HOM05D006550 ORTHO05D008630 2.1e-118 429.5 323 68.7
Medtr7g072210 Medicago truncatula HOM05D006550 ORTHO05D008630 1.3e-115 420.2 312 70.5
Medtr1g075060 Medicago truncatula HOM05D006550 ORTHO05D008630 2.4e-114 416.0 304 71.7
Medtr7g083520 Medicago truncatula HOM05D006550 ORTHO05D008630 2.4e-114 416.0 286 74.1
Medtr6g051405 Medicago truncatula HOM05D006550 ORTHO05D008630 6.0e-110 401.4 324 65.7
Medtr1g100375 Medicago truncatula HOM05D006550 ORTHO05D008630 7.9e-110 401.0 324 65.7
Medtr3g464170 Medicago truncatula HOM05D006550 ORTHO05D008630 7.9e-110 401.0 324 65.7
Medtr3g464310 Medicago truncatula HOM05D006550 ORTHO05D008630 8.7e-109 397.5 318 66.4
Medtr6g016670 Medicago truncatula HOM05D006550 ORTHO05D008630 8.7e-109 397.5 318 66.4
Medtr7g461350 Medicago truncatula HOM05D006550 ORTHO05D008630 8.7e-109 397.5 318 66.4
Medtr1g471070 Medicago truncatula HOM05D006550 ORTHO05D008630 5.6e-108 394.8 324 64.8
Medtr3g450670 Medicago truncatula HOM05D006550 ORTHO05D008630 5.6e-108 394.8 324 64.8
Medtr3g464850 Medicago truncatula HOM05D006550 ORTHO05D008630 4.8e-107 391.7 250 78.8
Medtr2g072860 Medicago truncatula HOM05D006550 ORTHO05D008630 6.0e-102 374.8 300 65.7
Medtr7g062380 Medicago truncatula HOM05D006550 ORTHO05D008630 5.1e-93 345.1 257 70.4
Medtr1g026240 Medicago truncatula HOM05D006550 ORTHO05D008630 2.2e-80 303.1 297 58.9
Medtr0021s0270 Medicago truncatula HOM05D006550 ORTHO05D008630 6.5e-80 301.6 173 79.2
Medtr1g086750 Medicago truncatula HOM05D006550 ORTHO05D008630 1.1e-79 300.8 215 74.4
Medtr6g065130 Medicago truncatula HOM05D006550 ORTHO05D008630 1.1e-79 300.8 231 68.0
Medtr8g045460 Medicago truncatula HOM05D006550 ORTHO05D008630 2.7e-78 296.2 303 57.4
Medtr3g093185 Medicago truncatula HOM05D006550 ORTHO05D008630 1.1e-76 290.8 304 56.2
Medtr2g073530 Medicago truncatula HOM05D006550 ORTHO05D008630 9.7e-68 261.2 256 56.6
CARHR054710 Cardamine hirsuta HOM05D006550 ORTHO05D008630 2.8e-67 259.6 312 47.4
AL8G18760 Arabidopsis lyrata HOM05D006550 ORTHO05D008630 5.9e-65 251.9 312 46.8
Medtr4g046090 Medicago truncatula HOM05D006550 ORTHO05D008630 1.4e-58 230.7 202 64.4
Medtr1g048350 Medicago truncatula HOM05D006550 ORTHO05D008630 2.4e-58 229.9 257 53.3
TPR.G13907 Trifolium pratense HOM05D006550 ORTHO05D008630 3.1e-58 229.6 177 65.0
Medtr1454s0010 Medicago truncatula HOM05D006550 ORTHO05D008630 1.1e-55 221.1 128 80.5
Medtr6g069240 Medicago truncatula HOM05D006550 ORTHO05D008630 8.0e-54 214.9 146 73.3
Medtr1240s0010 Medicago truncatula HOM05D006550 ORTHO05D008630 1.1e-50 204.5 161 72.0
Medtr3g108270 Medicago truncatula HOM05D006550 ORTHO05D008630 1.4e-50 204.1 177 61.0
Medtr3g016340 Medicago truncatula HOM05D006550 ORTHO05D008630 5.4e-50 202.2 149 68.5
Medtr8g017060 Medicago truncatula HOM05D006550 ORTHO05D008630 4.5e-49 199.1 143 69.9
Medtr3g074670 Medicago truncatula HOM05D006550 ORTHO05D008630 9.5e-47 191.4 294 47.3
TPR.G22538 Trifolium pratense HOM05D006550 ORTHO05D008630 3.0e-45 186.4 161 59.0
Medtr3g110230 Medicago truncatula HOM05D006550 ORTHO05D008630 9.8e-44 181.4 162 63.0
CARHR151080 Cardamine hirsuta HOM05D006550 ORTHO05D008630 8.3e-43 178.3 176 50.6
Medtr3g068050 Medicago truncatula HOM05D006550 ORTHO05D008630 3.9e-40 169.5 229 48.0
Medtr2g014785 Medicago truncatula HOM05D006550 ORTHO05D008630 2.1e-38 163.7 156 66.0
CARHR058790 Cardamine hirsuta HOM05D006550 ORTHO05D008630 1.8e-37 160.6 165 50.3
Medtr2g014790 Medicago truncatula HOM05D006550 ORTHO05D008630 9.8e-36 154.8 90 81.1
Medtr6g079450 Medicago truncatula HOM05D006550 ORTHO05D008630 1.3e-35 154.5 121 65.3
Medtr8g065645 Medicago truncatula HOM05D006550 ORTHO05D008630 3.7e-35 152.9 114 69.3
Psat0s567g0040 Pisum sativum HOM05D006550 ORTHO05D008630 8.3e-35 151.8 179 47.5
CARHR154020 Cardamine hirsuta HOM05D006550 ORTHO05D008630 9.2e-34 148.3 195 43.1
TPR.G21052 Trifolium pratense HOM05D006550 ORTHO05D008630 1.3e-32 144.4 127 62.2
TPR.G31092 Trifolium pratense HOM05D006550 ORTHO05D008630 6.6e-32 142.1 123 62.6
Medtr1g047160 Medicago truncatula HOM05D006550 ORTHO05D008630 5.6e-31 139.0 106 66.0
Medtr1g047150 Medicago truncatula HOM05D006550 ORTHO05D008630 1.2e-30 137.9 96 82.3
TPR.G35168 Trifolium pratense HOM05D006550 ORTHO05D008630 1.6e-30 137.5 129 58.9
AL3G47380 Arabidopsis lyrata HOM05D006550 ORTHO05D008630 1.4e-29 134.4 310 33.9
Medtr3g108260 Medicago truncatula HOM05D006550 ORTHO05D008630 1.8e-29 134.0 96 80.2
Medtr1g106945 Medicago truncatula HOM05D006550 ORTHO05D008630 5.2e-29 132.5 82 80.5
CARHR052930 Cardamine hirsuta HOM05D006550 ORTHO05D008630 4.9e-27 125.9 170 43.5
Medtr1g106935 Medicago truncatula HOM05D006550 ORTHO05D008630 1.6e-25 120.9 112 64.3
Medtr2g073570 Medicago truncatula HOM05D006550 ORTHO05D008630 1.6e-25 120.9 100 62.0
TPR.G28141 Trifolium pratense HOM05D006550 ORTHO05D008630 1.6e-25 120.9 172 45.9
Medtr3g053390 Medicago truncatula HOM05D006550 ORTHO05D008630 5.1e-24 115.9 133 53.4
TPR.G21507 Trifolium pratense HOM05D006550 ORTHO05D008630 1.1e-23 114.8 106 60.4
Medtr0007s0250 Medicago truncatula HOM05D006550 ORTHO05D008630 1.7e-19 100.9 271 31.0
CARHR257980 Cardamine hirsuta HOM05D006550 ORTHO05D008630 2.9e-19 100.1 64 64.1
Medtr3g075000 Medicago truncatula HOM05D006550 ORTHO05D008630 6.4e-19 99.0 69 66.7
Medtr5g048890 Medicago truncatula HOM05D006550 ORTHO05D008630 1.4e-18 97.8 66 68.2
TPR.G31250 Trifolium pratense HOM05D000214 ORTHO05D013285 3.2e-18 96.7 96 56.2
Lj3g0017791 Lotus japonicus HOM05D006550 ORTHO05D008630 4.6e-17 92.8 118 52.5
Lj3g0008820 Lotus japonicus HOM05D006550 ORTHO05D008630 6.0e-17 92.4 118 51.7
Lj4g0022286 Lotus japonicus HOM05D006550 ORTHO05D008630 6.0e-17 92.4 118 51.7
CARHR214550 Cardamine hirsuta HOM05D006550 ORTHO05D008630 7.8e-17 92.0 77 57.1
Lj3g0014744 Lotus japonicus HOM05D006550 ORTHO05D008630 7.8e-17 92.0 118 51.7
Lj2g0009425 Lotus japonicus HOM05D006550 ORTHO05D008630 1.1e-15 88.2 118 50.8
Lj2g0024473 Lotus japonicus HOM05D006550 ORTHO05D008630 1.9e-15 87.4 118 50.0
AT1G36675 Arabidopsis thaliana HOM05D006550 ORTHO05D008630 9.6e-15 85.1 227 33.0
CARHR216880 Cardamine hirsuta HOM05D006550 ORTHO05D008630 6.2e-14 82.4 57 56.1
Medtr3g108300 Medicago truncatula HOM05D006550 ORTHO05D008630 6.2e-14 82.4 62 67.7
Medtr7g068700 Medicago truncatula HOM05D006550 ORTHO05D008630 6.2e-14 82.4 66 68.2
Lj1g0023170 Lotus japonicus HOM05D006550 ORTHO05D008630 8.1e-14 82.0 115 46.1
BolC3t14362H Brassica oleracea HOM05D006550 ORTHO05D008630 1.4e-13 81.3 282 28.4
Lj3g0003228 Lotus japonicus HOM05D006550 ORTHO05D008630 5.2e-13 79.3 115 47.8
Medtr0658s0020 Medicago truncatula HOM05D006550 ORTHO05D008630 8.9e-13 78.6 54 75.9
Medtr3g053400 Medicago truncatula HOM05D006550 ORTHO05D008630 1.5e-12 77.8 76 57.9
Medtr1g101850 Medicago truncatula HOM05D006550 ORTHO05D008630 7.6e-12 75.5 137 38.7
CARHR121700 Cardamine hirsuta HOM05D006550 ORTHO05D008630 2.2e-11 73.9 56 69.6
TPR.G28145 Trifolium pratense HOM05D006550 ORTHO05D008630 2.9e-11 73.6 87 54.0
CARHR216890 Cardamine hirsuta HOM05D006550 ORTHO05D008630 4.9e-11 72.8 91 51.6
CARHR216860 Cardamine hirsuta HOM05D006550 ORTHO05D008630 8.4e-11 72.0 80 53.8
CARHR104360 Cardamine hirsuta HOM05D006550 ORTHO05D008630 5.4e-10 69.3 56 62.5
AT2G10975 Arabidopsis thaliana HOM05D006550 ORTHO05D008630 2.7e-09 67.0 103 43.7
Medtr8g063810 Medicago truncatula HOM05D006550 ORTHO05D008630 2.7e-09 67.0 46 69.6
CANSAT56G3242 Cannabis sativa HOM05D002730 ORTHO05D003261 4.6e-09 66.2 236 23.7
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 6.0e-09 65.9 113 31.9
BolC9t56217H Brassica oleracea HOM05D000589 ORTHO05D000401 6.0e-09 65.9 100 33.0
Medtr7g084840 Medicago truncatula HOM05D006550 ORTHO05D008630 7.8e-09 65.5 37 81.1
BolC9t57365H Brassica oleracea HOM05D000589 ORTHO05D000401 1.3e-08 64.7 113 28.3
Thhalv10000723m.g Eutrema salsugineum HOM05D000589 ORTHO05D000401 2.3e-08 63.9 257 25.3
AL8G16460 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 3.0e-08 63.5 132 29.5
BcaC07g36993 Brassica carinata HOM05D000589 ORTHO05D000401 3.9e-08 63.2 179 27.4
BolC6t35673H Brassica oleracea HOM05D000589 ORTHO05D000401 3.9e-08 63.2 135 26.7
BolC9t55113H Brassica oleracea HOM05D000589 ORTHO05D000401 3.9e-08 63.2 95 32.6
BolC9t58095H Brassica oleracea HOM05D000589 ORTHO05D000401 6.6e-08 62.4 140 25.0
BolC3t15139H Brassica oleracea HOM05D000589 ORTHO05D000401 8.7e-08 62.0 108 30.6
FvH4_1g21031 Fragaria vesca HOM05D001576 ORTHO05D000401 8.7e-08 62.0 114 27.2
Medtr5g020480 Medicago truncatula HOM05D006550 ORTHO05D008630 8.7e-08 62.0 49 63.3
AL8G19140 Arabidopsis lyrata HOM05D006550 ORTHO05D008630 1.1e-07 61.6 88 42.0
BolC2t08273H Brassica oleracea HOM05D000589 ORTHO05D000401 1.1e-07 61.6 93 30.1
BolC6t38683H Brassica oleracea HOM05D000589 ORTHO05D000401 1.1e-07 61.6 103 28.2
AL8G33970 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 1.5e-07 61.2 107 30.8
BolC2t08934H Brassica oleracea HOM05D000589 ORTHO05D000401 1.9e-07 60.8 276 24.6
BolC7t44420H Brassica oleracea HOM05D000589 ORTHO05D000401 2.5e-07 60.5 240 26.7
Hund18413 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.5e-07 60.5 266 22.6
TPR.G23713 Trifolium pratense HOM05D006550 ORTHO05D008630 2.5e-07 60.5 44 65.9
BolC2t10503H Brassica oleracea HOM05D000589 ORTHO05D000401 3.3e-07 60.1 210 26.2
Hund07454 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.3e-07 60.1 266 22.6
BolC4t23741H Brassica oleracea HOM05D000589 ORTHO05D000401 4.3e-07 59.7 118 27.1
BolC4t25233H Brassica oleracea HOM05D000589 ORTHO05D000401 4.3e-07 59.7 119 24.4
BolC8t47310H Brassica oleracea HOM05D000214 ORTHO05D000401 4.3e-07 59.7 172 26.7
BolC9t57022H Brassica oleracea HOM05D000214 ORTHO05D000131 4.3e-07 59.7 113 29.2
CSS0038450 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.3e-07 59.7 143 24.5
BolC2t11251H Brassica oleracea HOM05D000589 ORTHO05D000401 5.6e-07 59.3 218 27.1
BolC4t25880H Brassica oleracea HOM05D000589 ORTHO05D000401 5.6e-07 59.3 104 28.8
Medtr3g053410 Medicago truncatula HOM05D006550 ORTHO05D008630 5.6e-07 59.3 37 62.2
Hund01102 Selenicereus undatus HOM05D018444 ORTHO05D011049 5.6e-07 59.3 293 25.9
BolC3t14123H Brassica oleracea HOM05D000589 ORTHO05D000401 7.3e-07 58.9 204 26.0
BolC8t48721H Brassica oleracea HOM05D000589 ORTHO05D000401 7.3e-07 58.9 141 25.5
BraA09t37707Z Brassica rapa HOM05D000589 ORTHO05D000401 7.3e-07 58.9 104 28.8
Haze_20229 Corylus avellana HOM05D001576 ORTHO05D000401 7.3e-07 58.9 135 24.4
Medtr4g063670 Medicago truncatula HOM05D000589 ORTHO05D000401 7.3e-07 58.9 239 25.1
Hund03592 Selenicereus undatus HOM05D000214 ORTHO05D000131 7.3e-07 58.9 251 23.1
Hund03698 Selenicereus undatus HOM05D000214 ORTHO05D000131 7.3e-07 58.9 266 22.6
Hund11062 Selenicereus undatus HOM05D000214 ORTHO05D000131 7.3e-07 58.9 266 22.6
AL5G28650 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 9.6e-07 58.5 108 31.5
AL6G29040 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 1.3e-06 58.2 108 30.6
BolC8t47924H Brassica oleracea HOM05D000589 ORTHO05D000401 1.3e-06 58.2 134 28.4
BolC9t58301H Brassica oleracea HOM05D000589 ORTHO05D000401 1.3e-06 58.2 138 26.8
Hund20929 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.6e-06 57.8 266 22.6
BcaC01g01358 Brassica carinata HOM05D000589 ORTHO05D000401 2.1e-06 57.4 286 21.3
BcaC05g24983 Brassica carinata HOM05D000589 ORTHO05D000401 2.1e-06 57.4 228 23.2
BolC2t11945H Brassica oleracea HOM05D000589 ORTHO05D000401 2.1e-06 57.4 102 28.4
BolC6t39059H Brassica oleracea HOM05D000589 ORTHO05D000401 2.1e-06 57.4 95 27.4
BolC9t53773H Brassica oleracea HOM05D000589 ORTHO05D000401 2.1e-06 57.4 268 24.3
BolC9t54041H Brassica oleracea HOM05D000589 ORTHO05D000401 2.1e-06 57.4 138 29.7
BolC9t55279H Brassica oleracea HOM05D000589 ORTHO05D000401 2.1e-06 57.4 103 27.2
CARHR289460 Cardamine hirsuta HOM05D006550 ORTHO05D008630 2.1e-06 57.4 88 38.6
BolC7t43162H Brassica oleracea HOM05D000589 ORTHO05D000401 2.8e-06 57.0 128 27.3
BolC8t47046H Brassica oleracea HOM05D000589 ORTHO05D000401 2.8e-06 57.0 247 25.9
Dinv13716 Davidia involucrata HOM05D002266 ORTHO05D010337 2.8e-06 57.0 167 24.0
Medtr8g065640 Medicago truncatula HOM05D006550 ORTHO05D008630 2.8e-06 57.0 50 64.0
TWI56G1359 Tripterygium wilfordii HOM05D020473 ORTHO05D026208 2.8e-06 57.0 122 24.6
BolC2t10988H Brassica oleracea HOM05D000589 ORTHO05D000401 4.8e-06 56.2 133 27.8
BolC5t29855H Brassica oleracea HOM05D000589 ORTHO05D000401 4.8e-06 56.2 232 25.9
CSS0012008 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.8e-06 56.2 256 23.4
CSS0015368 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.8e-06 56.2 256 23.4
Carub.0006s1187 Capsella rubella HOM05D000589 ORTHO05D000401 4.8e-06 56.2 215 26.5
Glyma.17G168800 Glycine max HOM05D001576 ORTHO05D000401 4.8e-06 56.2 235 24.3
BolC7t44270H Brassica oleracea HOM05D000126 ORTHO05D000085 6.2e-06 55.8 267 23.6
BolC8t47336H Brassica oleracea HOM05D000589 ORTHO05D000401 6.2e-06 55.8 122 27.9
TPR.G38844 Trifolium pratense HOM05D000589 ORTHO05D000401 6.2e-06 55.8 186 24.2
AL3G20450 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 8.1e-06 55.5 285 24.9
AL8G21500 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 8.1e-06 55.5 107 29.0
BolC1t03605H Brassica oleracea HOM05D000589 ORTHO05D000401 8.1e-06 55.5 85 29.4
CSS0005302 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 8.1e-06 55.5 256 23.4
CSS0014799 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 8.1e-06 55.5 256 23.4
Carub.0001s4114 Capsella rubella HOM05D000589 ORTHO05D000401 8.1e-06 55.5 107 29.0
Rhsim07G0047500 Rhododendron simsii HOM05D009487 ORTHO05D011434 8.1e-06 55.5 92 25.0
Hund22147 Selenicereus undatus HOM05D000923 ORTHO05D000720 8.1e-06 55.5 234 24.8


User provided reference genes

Program Settings