Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g046790 Medicago truncatula HOM05D006670 ORTHO05D008715 1.6e-144 516.2 284 100.0
Medtr1g046510 Medicago truncatula HOM05D006670 ORTHO05D008715 6.7e-138 494.2 280 96.8
TPR.G11296 Trifolium pratense HOM05D006670 ORTHO05D008715 3.1e-119 432.2 273 85.7
Psat6g047400 Pisum sativum HOM05D006670 ORTHO05D008715 5.3e-119 431.4 284 83.5
Ca_11808_v3 Cicer arietinum L. HOM05D006670 ORTHO05D008715 1.6e-118 429.9 282 84.0
VMungo0720G2028 Vigna mungo HOM05D006670 ORTHO05D008715 2.3e-106 389.4 273 76.6
Glyma.10G127400 Glycine max HOM05D006670 ORTHO05D008715 5.2e-106 388.3 276 76.4
Lalb_Chr01g0011161 Lupinus albus HOM05D006670 ORTHO05D008715 5.2e-106 388.3 271 79.0
arahy.Tifrunner.gnm1.ann1.CI907D Arachis hypogaea HOM05D006670 ORTHO05D008715 6.8e-106 387.9 271 77.9
Phvul.007G238000 Phaseolus vulgaris HOM05D006670 ORTHO05D008715 1.5e-105 386.7 274 75.2
arahy.Tifrunner.gnm1.ann1.M1QCRY Arachis hypogaea HOM05D006670 ORTHO05D008715 1.3e-104 383.6 271 77.5
Lj6g0025132 Lotus japonicus HOM05D006670 ORTHO05D008715 8.3e-104 380.9 277 75.5
Manes.03G154700 Manihot esculenta HOM05D006670 ORTHO05D008715 2.6e-97 359.4 280 69.3
Manes.15G049800 Manihot esculenta HOM05D006670 ORTHO05D008715 4.4e-97 358.6 270 70.7
QL06p022765 Quercus lobata HOM05D006670 ORTHO05D008715 7.0e-95 351.3 282 70.2
Prupe.1G056900 Prunus persica HOM05D006670 ORTHO05D008715 4.6e-94 348.6 278 68.0
Haze_11539 Corylus avellana HOM05D006670 ORTHO05D008715 1.3e-93 347.1 282 68.1
CANSAT78G1187 Cannabis sativa HOM05D006670 ORTHO05D008715 3.9e-93 345.5 283 67.1
Cfa014868 Carpinus fangiana HOM05D006670 ORTHO05D008715 3.9e-93 345.5 282 68.1
Ciclev10005609m.g Citrus clementina HOM05D006670 ORTHO05D008715 3.9e-93 345.5 275 68.7
COL.COLO4_05724 Corchorus olitorius HOM05D006670 ORTHO05D008715 3.9e-93 345.5 273 69.6
Aqoxy2G03824 Aquilegia oxysepala HOM05D006670 ORTHO05D008715 5.0e-93 345.1 282 64.9
Sed0004390 Sechium edule HOM05D006670 ORTHO05D008715 5.0e-93 345.1 276 68.5
ClCG05G003670 Citrullus lanatus HOM05D006670 ORTHO05D008715 1.1e-92 344.0 281 67.3
PSO063G6527 Papaver somniferum HOM05D006670 ORTHO05D008715 1.1e-92 344.0 282 65.6
RcHm_v2.0_Chr4g0396631 Rosa chinensis HOM05D006670 ORTHO05D008715 1.1e-92 344.0 282 66.7
Sabra03G0127900 Salix brachista HOM05D006670 ORTHO05D008715 1.1e-92 344.0 280 66.4
Potri.003G174400 Populus trichocarpa HOM05D006670 ORTHO05D008715 3.3e-92 342.4 283 66.4
CsaV3_3G011380 Cucumis sativus L. HOM05D006670 ORTHO05D008715 2.1e-91 339.7 275 66.9
FAN22G1637 Fragaria x ananassa HOM05D006670 ORTHO05D008715 6.2e-91 338.2 282 66.0
FvH4_4g05510 Fragaria vesca HOM05D006670 ORTHO05D008715 8.0e-91 337.8 282 66.7
Gorai.011G163000 Gossypium raimondii HOM05D006670 ORTHO05D008715 1.0e-90 337.4 273 68.5
CiPaw.01G205600 Carya illinoinensis HOM05D006670 ORTHO05D008715 2.3e-90 336.3 280 67.5
Duzib212G0230 Durio zibethinus HOM05D006670 ORTHO05D008715 2.3e-90 336.3 273 67.8
Gohir.D10G145900 Gossypium hirsutum HOM05D006670 ORTHO05D008715 3.1e-90 335.9 273 68.1
MD13G1229700 Malus domestica HOM05D006670 ORTHO05D008715 3.1e-90 335.9 280 65.7
MELO3C006346.2 Cucumis melo HOM05D006670 ORTHO05D008715 4.0e-90 335.5 275 66.2
TAR636G1307 Trochodendron aralioides HOM05D006670 ORTHO05D008715 4.0e-90 335.5 280 65.7
PGR083G1840 Punica granatum HOM05D006670 ORTHO05D008715 6.8e-90 334.7 271 66.1
PSO017G1158 Papaver somniferum HOM05D006670 ORTHO05D008715 8.9e-90 334.3 282 63.8
Dinv27152 Davidia involucrata HOM05D006670 ORTHO05D008715 1.2e-89 334.0 283 66.1
FAN12G2738 Fragaria x ananassa HOM05D006670 ORTHO05D008715 2.0e-89 333.2 282 66.0
Cpa.g.sc59.72 Carica papaya HOM05D006670 ORTHO05D008715 3.4e-89 332.4 271 66.4
FAN07G0632 Fragaria x ananassa HOM05D006670 ORTHO05D008715 4.4e-89 332.0 282 66.0
Thecc.04G214700 Theobroma cacao HOM05D006670 ORTHO05D008715 4.4e-89 332.0 273 67.0
Gohir.A10G120500 Gossypium hirsutum HOM05D006670 ORTHO05D008715 1.7e-88 330.1 273 66.7
MBI10_g16834_MAGBIO Magnolia biondii HOM05D006670 ORTHO05D008715 2.2e-88 329.7 278 65.1
Carub.0003s2449 Capsella rubella HOM05D006670 ORTHO05D008715 1.4e-87 327.0 277 63.5
CSS0047689 Camellia sinensis var. sinensis HOM05D006670 ORTHO05D008715 5.4e-87 325.1 280 63.6
HanXRQChr01g0022661 Helianthus annuus HOM05D006670 ORTHO05D008715 5.4e-87 325.1 268 64.9
CSS0048127 Camellia sinensis var. sinensis HOM05D006670 ORTHO05D008715 7.0e-87 324.7 280 63.6
AT3G24030 Arabidopsis thaliana HOM05D006670 ORTHO05D008715 9.2e-87 324.3 277 63.2
Atru.chr4.1814 Acer truncatum HOM05D006670 ORTHO05D008715 1.2e-86 323.9 279 64.9
ATR0787G198 Amborella trichopoda HOM05D006670 ORTHO05D008715 1.2e-86 323.9 273 65.9
Rhsim09G0046600 Rhododendron simsii HOM05D006670 ORTHO05D008715 2.0e-86 323.2 272 65.1
DCAR_024309 Daucus carota HOM05D006670 ORTHO05D008715 2.7e-86 322.8 273 64.8
AL3G39350 Arabidopsis lyrata HOM05D006670 ORTHO05D008715 3.5e-86 322.4 277 63.2
ECA248G0542 Erigeron canadensis HOM05D006670 ORTHO05D008715 3.5e-86 322.4 280 61.8
Thhalv10002635m.g Eutrema salsugineum HOM05D006670 ORTHO05D008715 4.6e-86 322.0 275 63.3
A07p08240 Brassica napus HOM05D006670 ORTHO05D008715 6.0e-86 321.6 273 63.7
CARHR100200 Cardamine hirsuta HOM05D006670 ORTHO05D008715 1.7e-85 320.1 277 63.5
AUR62035928 Chenopodium quinoa HOM05D006670 ORTHO05D008715 1.7e-85 320.1 278 62.2
Sp3g21930 Schrenkiella parvula HOM05D006670 ORTHO05D008715 1.7e-85 320.1 277 63.2
Hund24851 Selenicereus undatus HOM05D006670 ORTHO05D008715 2.3e-85 319.7 280 62.1
AUR62035321 Chenopodium quinoa HOM05D006670 ORTHO05D008715 5.0e-85 318.5 278 61.2
Ah.04g153360 Amaranthus hybridus HOM05D006670 ORTHO05D008715 1.5e-84 317.0 267 62.9
BcaB06g26594 Brassica carinata HOM05D006670 ORTHO05D008715 1.5e-84 317.0 277 62.5
Lsat_1_v5_gn_0_4721 Lactuca sativa HOM05D006670 ORTHO05D008715 1.9e-84 316.6 277 62.1
THA.LOC104808732 Tarenaya hassleriana HOM05D006670 ORTHO05D008715 2.5e-84 316.2 264 63.3
Rhsim09G0047600 Rhododendron simsii HOM05D006670 ORTHO05D008715 3.3e-84 315.8 276 62.7
Sc13g0002920 Simmondsia chinensis HOM05D006670 ORTHO05D008715 3.3e-84 315.8 269 63.9
BraA07t28607Z Brassica rapa HOM05D006670 ORTHO05D008715 7.3e-84 314.7 273 61.5
BolC7t41764H Brassica oleracea HOM05D006670 ORTHO05D008715 2.1e-83 313.2 273 61.9
Sopen05g031980 Solanum pennellii HOM05D006670 ORTHO05D008715 2.1e-83 313.2 282 61.3
BcaC06g35628 Brassica carinata HOM05D006670 ORTHO05D008715 2.8e-83 312.8 273 61.5
C07p12780 Brassica napus HOM05D006670 ORTHO05D008715 2.8e-83 312.8 273 61.5
Peaxi162Scf00536g00711 Petunia axillaris HOM05D006670 ORTHO05D008715 3.1e-82 309.3 286 61.2
Lju414A3G25 Lonicera japonica HOM05D006670 ORTHO05D008715 8.9e-82 307.8 242 71.5
vmacro00519 Vaccinium macrocarpon HOM05D006670 ORTHO05D008715 4.4e-81 305.4 323 54.8
Actinidia25088 Actinidia chinensis HOM05D006670 ORTHO05D008715 7.5e-81 304.7 246 68.7
Zm00001eb341310 Zea mays HOM05D006670 ORTHO05D008715 2.7e-78 296.2 277 59.2
MSTRG.4202 Avicennia marina HOM05D006670 ORTHO05D008715 2.3e-77 293.1 269 59.5
Eucgr.H02870 Eucalyptus grandis HOM05D006670 ORTHO05D008715 2.3e-77 293.1 270 60.0
Migut.G00614 Erythranthe guttata HOM05D006670 ORTHO05D008715 3.9e-77 292.4 283 59.0
SEGI_39672 Sequoiadendron giganteum HOM05D006670 ORTHO05D008715 3.9e-77 292.4 274 58.8
SGA_v2.0_scaffold57G20164 Striga asiatica HOM05D006670 ORTHO05D008715 6.6e-77 291.6 272 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.2e-75 287.3 273 59.0
Nitab4.5_0012036g0010 Nicotiana tabacum HOM05D006670 ORTHO05D008715 1.1e-74 284.3 271 57.2
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 2.3e-74 283.1 235 65.1
Mapoly0087s0052 Marchantia polymorpha HOM05D006670 ORTHO05D008715 6.8e-74 281.6 269 57.2
Nitab4.5_0001769g0060 Nicotiana tabacum HOM05D006670 ORTHO05D008715 1.2e-73 280.8 281 56.2
PGSC0003DMG400027217 Solanum tuberosum HOM05D006670 ORTHO05D008715 2.6e-73 279.6 242 62.4
SHI00002 Sapria himalayana HOM05D006670 ORTHO05D008715 5.8e-73 278.5 301 54.2
Nn3g19866 Nelumbo nucifera HOM05D006670 ORTHO05D008715 9.9e-73 277.7 235 63.8
Pp3c9_10780 Physcomitrium patens HOM05D006670 ORTHO05D008715 3.7e-72 275.8 269 55.4
GSVIVG01029032001 Vitis vinifera HOM05D006670 ORTHO05D008715 1.4e-71 273.9 226 67.3
SMO137G0262 Selaginella moellendorffii HOM05D006670 ORTHO05D008715 1.3e-69 267.3 263 56.3
Cc03_g07080 Coffea canephora HOM05D006670 ORTHO05D008715 1.6e-67 260.4 226 62.4
Psat7g020640 Pisum sativum HOM05D006670 ORTHO05D008715 2.4e-66 256.5 186 78.5
Psat4g139560 Pisum sativum HOM05D006670 ORTHO05D000720 4.4e-65 252.3 222 67.1
Oeu022324.1 Olea europaea HOM05D006670 ORTHO05D008715 3.8e-64 249.2 242 57.4
unitig_747.g21700 Utricularia gibba HOM05D006670 ORTHO05D008715 3.5e-62 242.7 390 40.0
RhsimUnG0181700 Rhododendron simsii HOM05D006670 ORTHO05D008715 5.6e-60 235.3 272 50.7
Psat0s5229g0080 Pisum sativum HOM05D006670 ORTHO05D006513 8.1e-59 231.5 220 62.7
SMO134G0250 Selaginella moellendorffii HOM05D006670 ORTHO05D008715 2.4e-58 229.9 271 50.6
EL10Ac3g06772 Beta vulgaris HOM05D006670 ORTHO05D008715 1.3e-56 224.2 236 54.2
Cre06.g255350 Chlamydomonas reinhardtii HOM05D006670 ORTHO05D008715 5.4e-55 218.8 263 50.6
Dinv44414 Davidia involucrata HOM05D006670 ORTHO05D008715 3.3e-44 183.0 151 67.5
Psat4g139640 Pisum sativum HOM05D006670 ORTHO05D002176 2.1e-43 180.3 149 73.2
Lju414A3G24 Lonicera japonica HOM05D006670 ORTHO05D008715 2.2e-40 170.2 129 71.3
Potri.001G053900 Populus trichocarpa HOM05D006670 ORTHO05D008715 2.9e-40 169.9 121 72.7
CAN.G305.16 Capsicum annuum HOM05D006670 ORTHO05D008715 3.9e-37 159.5 142 63.4
Os01g0363600 Oryza sativa ssp. japonica HOM05D006670 ORTHO05D008715 6.7e-37 158.7 139 58.3
Rhsim09G0047300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.3e-36 156.4 144 58.3
CAN.G305.17 Capsicum annuum HOM05D006670 ORTHO05D008715 3.1e-34 149.8 154 52.6
Lsat_1_v5_gn_5_180420 Lactuca sativa HOM05D006670 ORTHO05D008715 2.0e-25 120.6 115 57.4
Sabra01G0038200 Salix brachista HOM05D006670 ORTHO05D349611 5.9e-25 119.0 211 41.7
Migut.G00612 Erythranthe guttata HOM05D006670 ORTHO05D008715 9.4e-23 111.7 128 55.5
PGSC0003DMG402027165 Solanum tuberosum HOM05D006670 ORTHO05D008715 3.3e-20 103.2 80 68.8
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 2.2e-19 100.5 261 31.8
FAN17G2931 Fragaria x ananassa HOM05D006670 ORTHO05D008715 3.1e-18 96.7 80 63.8
Psat5g196680 Pisum sativum HOM05D006670 ORTHO05D008715 5.5e-15 85.9 51 84.3


User provided reference genes

Program Settings