Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 7.0e-109 397.5 234 100.0
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 7.3e-90 334.3 235 79.6
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 2.6e-79 299.3 234 73.1
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 2.2e-78 296.2 234 73.5
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 1.1e-72 277.3 234 67.9
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 2.3e-67 259.6 231 67.1
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 3.9e-67 258.8 232 63.4
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 2.5e-66 256.1 235 62.1
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 7.4e-66 254.6 234 68.4
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 1.7e-62 243.4 192 70.3
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 2.5e-61 239.6 197 68.0
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 8.7e-51 204.5 216 51.9
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 9.7e-50 201.1 206 53.9
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 6.3e-49 198.4 221 60.2
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 8.2e-49 198.0 221 56.1
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 2.0e-47 193.4 213 54.5
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 4.5e-47 192.2 227 49.3
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 1.9e-45 186.8 220 47.7
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 2.5e-45 186.4 236 47.9
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 5.5e-45 185.3 236 48.7
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 9.4e-45 184.5 236 47.5
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 2.1e-44 183.3 208 52.4
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 2.1e-44 183.3 223 56.1
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.7e-44 183.0 236 48.3
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 6.1e-44 181.8 234 47.4
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 6.1e-44 181.8 233 48.1
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 1.8e-43 180.3 107 87.9
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 2.3e-43 179.9 208 53.4
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 3.9e-43 179.1 209 52.2
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 3.9e-43 179.1 217 50.2
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 8.8e-43 177.9 209 51.7
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 1.1e-42 177.6 248 45.2
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 2.6e-42 176.4 245 45.7
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 7.4e-42 174.9 217 53.5
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 9.7e-42 174.5 217 50.7
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 2.8e-41 172.9 196 50.5
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 3.7e-41 172.6 215 48.8
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 6.3e-41 171.8 210 54.3
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 8.2e-41 171.4 204 49.0
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.1e-40 171.0 219 44.7
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 2.4e-40 169.9 205 54.6
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 4.1e-40 169.1 202 51.0
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 6.9e-40 168.3 200 56.5
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 2.0e-39 166.8 226 50.9
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 2.6e-39 166.4 200 49.0
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 2.6e-39 166.4 219 47.5
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.6e-39 166.4 230 47.8
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.4e-39 166.0 208 51.0
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 7.7e-39 164.9 216 47.2
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 1.7e-38 163.7 198 47.0
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 2.2e-38 163.3 242 47.1
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 5.0e-38 162.2 193 51.8
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 1.4e-37 160.6 228 45.6
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 1.4e-37 160.6 218 50.9
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 5.5e-37 158.7 211 50.7
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 7.2e-37 158.3 117 76.1
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 1.6e-36 157.1 231 45.5
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.6e-36 157.1 235 45.5
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 2.7e-36 156.4 196 49.5
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 4.7e-36 155.6 160 66.9
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 6.1e-36 155.2 237 47.3
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 6.1e-36 155.2 221 43.9
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 7.9e-36 154.8 231 45.5
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.0e-35 154.5 211 46.4
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.4e-35 154.1 211 46.0
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 2.3e-35 153.3 201 56.2
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 2.3e-35 153.3 209 46.4
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.9e-35 152.5 209 46.4
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 3.9e-35 152.5 235 43.0
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 5.2e-35 152.1 250 47.2
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 6.7e-35 151.8 226 41.6
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 1.1e-34 151.0 235 43.8
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.1e-34 151.0 201 48.3
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 7.4e-34 148.3 208 44.2
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 2.2e-33 146.7 201 50.2
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 6.3e-33 145.2 218 45.9
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.4e-32 144.1 216 51.9
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 7.0e-32 141.7 222 50.0
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 7.0e-32 141.7 213 51.6
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 2.0e-31 140.2 228 41.2
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 5.9e-31 138.7 220 48.2
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 1.0e-30 137.9 133 60.9
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 2.2e-30 136.7 231 41.6
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 3.8e-30 136.0 221 42.5
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 1.9e-29 133.7 232 42.7
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 9.4e-29 131.3 173 52.6
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 2.3e-27 126.7 180 43.9
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 2.0e-26 123.6 229 37.6
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 2.0e-26 123.6 229 37.6
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 6.3e-25 118.6 175 52.0
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 8.2e-25 118.2 111 58.6
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 2.4e-24 116.7 232 37.5
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 4.1e-24 115.9 187 43.3
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 2.0e-23 113.6 204 40.7
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 5.9e-23 112.1 168 44.6
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 1.0e-22 111.3 223 35.9
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.2e-22 110.2 193 41.5
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 4.2e-21 105.9 153 51.6
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 8.0e-20 101.7 183 38.8
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 8.0e-20 101.7 163 42.9
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 8.8e-19 98.2 125 45.6
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 2.6e-18 96.7 189 41.8
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 3.4e-18 96.3 206 37.9
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 5.7e-18 95.5 178 38.2
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 7.5e-18 95.1 187 37.4
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 7.5e-18 95.1 187 37.4
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 7.5e-18 95.1 187 37.4
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 7.5e-18 95.1 236 33.9
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 9.8e-18 94.7 236 33.9
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 9.8e-18 94.7 236 33.9
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 9.8e-18 94.7 236 33.9
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 9.8e-18 94.7 236 33.9
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.2e-17 93.6 114 50.0
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 3.7e-17 92.8 207 38.2
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 4.8e-17 92.4 208 35.6
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 8.3e-17 91.7 171 38.0
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 1.1e-16 91.3 187 36.9
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 1.1e-16 91.3 114 49.1
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.1e-16 91.3 220 40.5
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.4e-16 90.1 239 33.5
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 4.1e-16 89.4 116 48.3
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 9.1e-16 88.2 178 37.1
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.6e-15 87.4 116 47.4
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 2.0e-15 87.0 194 35.1
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 3.5e-15 86.3 129 53.5
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 1.0e-14 84.7 197 33.0
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.3e-14 84.3 230 39.6
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 2.9e-14 83.2 112 49.1
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.7e-12 75.9 129 50.4
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 2.0e-10 70.5 127 36.2
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 1.7e-09 67.4 146 34.2
ATR0088G022 Amborella trichopoda HOM05D005697 ORTHO05D006951 1.7e-06 57.4 42 61.9


User provided reference genes

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