Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 3.3e-47 191.4 102 100.0
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 2.2e-35 152.1 100 77.0
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 1.3e-30 136.3 84 81.0
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 9.1e-29 130.2 100 73.0
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 3.5e-28 128.3 99 71.7
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 2.3e-27 125.6 80 81.2
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 2.0e-23 112.5 101 70.3
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.3e-22 109.8 87 64.4
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 1.7e-22 109.4 77 74.0
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 2.2e-22 109.0 79 68.4
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 2.8e-22 108.6 84 73.8
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.7e-22 108.2 109 55.0
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 6.3e-22 107.5 110 55.5
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 1.1e-21 106.7 79 67.1
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 5.4e-21 104.4 105 61.0
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 1.6e-20 102.8 109 53.2
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.7e-20 102.1 77 70.1
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 3.5e-20 101.7 83 63.9
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 5.9e-20 100.9 77 70.1
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 5.9e-20 100.9 101 57.4
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 5.9e-20 100.9 110 55.5
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 7.8e-20 100.5 84 69.0
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 1.7e-19 99.4 103 60.2
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 3.8e-19 98.2 81 64.2
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.8e-19 98.2 104 53.8
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.0e-19 97.8 101 59.4
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.0e-19 97.8 101 59.4
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 5.0e-19 97.8 101 59.4
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 8.6e-19 97.1 80 60.0
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.9e-18 95.9 105 54.3
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 1.9e-18 95.9 79 59.5
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 2.5e-18 95.5 95 54.7
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 3.3e-18 95.1 101 53.5
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 3.3e-18 95.1 106 52.8
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 7.3e-18 94.0 101 53.5
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 7.3e-18 94.0 80 60.0
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 9.5e-18 93.6 80 58.8
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 9.5e-18 93.6 80 58.8
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 1.6e-17 92.8 104 54.8
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 2.8e-17 92.0 105 53.3
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 6.1e-17 90.9 88 51.1
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 1.4e-16 89.7 83 57.8
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 1.8e-16 89.4 77 62.3
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 2.3e-16 89.0 63 71.4
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 2.3e-16 89.0 103 48.5
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 2.3e-16 89.0 106 51.9
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.0e-16 88.6 102 52.0
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 6.8e-16 87.4 86 62.8
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 8.9e-16 87.0 97 57.7
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 8.9e-16 87.0 79 59.5
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.2e-15 86.7 80 53.8
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 1.2e-15 86.7 101 50.5
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 3.4e-15 85.1 127 44.9
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 4.4e-15 84.7 103 48.5
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 7.5e-15 84.0 80 52.5
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 7.5e-15 84.0 79 57.0
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 9.8e-15 83.6 80 52.5
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.2e-14 82.4 104 44.2
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 2.9e-14 82.0 81 66.7
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.7e-14 81.6 64 64.1
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 4.9e-14 81.3 80 52.5
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 6.4e-14 80.9 58 65.5
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 6.4e-14 80.9 81 54.3
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 6.4e-14 80.9 80 50.0
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 8.3e-14 80.5 100 51.0
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 8.3e-14 80.5 80 51.2
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.1e-13 80.1 80 52.5
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.4e-13 79.7 87 48.3
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 1.4e-13 79.7 81 50.6
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 1.4e-13 79.7 71 57.7
TPR.G28753 Trifolium pratense HOM05D000292 ORTHO05D000172 1.4e-13 79.7 56 73.2
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 3.2e-13 78.6 68 58.8
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 4.1e-13 78.2 92 50.0
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 5.4e-13 77.8 102 47.1
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 7.0e-13 77.4 78 55.1
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.2e-12 76.6 81 50.6
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.2e-12 76.6 80 62.5
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 1.6e-12 76.3 79 51.9
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.6e-12 76.3 94 47.9
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 2.0e-12 75.9 78 53.8
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 2.0e-12 75.9 77 53.2
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 2.7e-12 75.5 105 45.7
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 4.6e-12 74.7 85 50.6
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 6.0e-12 74.3 105 45.7
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 6.0e-12 74.3 76 50.0
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 1.0e-11 73.6 90 47.8
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 1.0e-11 73.6 90 47.8
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.3e-11 73.2 98 43.9
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 1.3e-11 73.2 103 42.7
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 1.3e-11 73.2 58 63.8
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 1.7e-11 72.8 84 52.4
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 1.7e-11 72.8 79 48.1
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 1.7e-11 72.8 105 51.4
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.7e-11 72.8 76 53.9
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 2.3e-11 72.4 41 80.5
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 2.3e-11 72.4 105 51.4
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.0e-11 72.0 60 60.0
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 3.9e-11 71.6 89 46.1
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 3.9e-11 71.6 78 50.0
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.9e-11 71.6 57 63.2
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 1.1e-10 70.1 86 47.7
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.5e-10 69.7 87 47.1
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 1.9e-10 69.3 64 57.8
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 1.9e-10 69.3 64 57.8
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 3.3e-10 68.6 87 48.3
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 5.6e-10 67.8 58 56.9
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 9.5e-10 67.0 60 58.3
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 9.5e-10 67.0 60 58.3
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 9.5e-10 67.0 60 58.3
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 1.2e-09 66.6 94 45.7
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 2.1e-09 65.9 102 39.2
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 2.1e-09 65.9 83 44.6
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 3.6e-09 65.1 76 46.1
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 6.2e-09 64.3 56 64.3
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 8.0e-09 63.9 88 52.3
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 8.0e-09 63.9 88 52.3
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 8.0e-09 63.9 66 56.1
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 1.8e-08 62.8 56 58.9
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 2.3e-08 62.4 57 57.9
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 3.1e-08 62.0 48 66.7
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 6.8e-08 60.8 56 55.4
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 6.8e-08 60.8 56 57.1
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 6.8e-08 60.8 56 55.4
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 6.8e-08 60.8 56 55.4
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 6.8e-08 60.8 56 57.1
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 1.5e-07 59.7 89 55.1
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 1.5e-07 59.7 56 55.4
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.5e-07 59.7 56 55.4
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.5e-07 59.7 56 55.4
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 2.0e-07 59.3 56 57.1
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 2.0e-07 59.3 56 57.1
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 7.5e-07 57.4 55 54.5
EL10Ac3g04956 Beta vulgaris HOM05D005475 ORTHO05D006575 3.7e-06 55.1 85 38.8


User provided reference genes

Program Settings